Nitrogen is an essential macronutrient for plants and nitrogen fertilizers are indispensable for modern agriculture. Unfortunately, we know too little about how plants regulate their use of soil nitrogen, to maximize fertilizers-N use by crops and pastures. This project took a dual approach, involving forward and reverse genetics, to identify N-regulators in plants, which may prove useful in the future to improve nitrogen-use efficiency in agriculture. To identify nitrogen-regulated transcription factor genes in Arabidopsis that may control N-use efficiency we developed a unique resource for qRT-PCR measurements on all Arabidpsis transcription factor genes. Using closely spaced, gene-specific primer pairs and SYBR® Green to monitor amplification of double-stranded DNA, transcript levels of 83% of all target genes could be measured in roots or shoots of young Arabidopsis wild-type plants. Only 4% of reactions produced non-specific PCR products, and 13% of TF transcripts were undetectable in these organs. Measurements of transcript abundance were quantitative over six orders of magnitude, with a detection limit equivalent to one transcript molecule in 1000 cells. Transcript levels for different TF genes ranged between 0.001-100 copies per cell. Real-time RT-PCR revealed 26 root-specific and 39 shoot-specific TF genes, most of which have not been identified as organ-specific previously.<br><br> An enlarged and improved version of the TF qRT-PCR platform contains now primer pairs for 2256 Arabidopsis TF genes, representing 53 gene families and sub-families arrayed on six 384-well plates. Set-up of real-time PCR reactions is now fully robotized. One researcher is able to measure expression of all 2256 TF genes in a single biological sample in a just one working day. The Arabidopsis qRT-PCT platform was successfully used to identify 37 TF genes which transcriptionaly responded at the transcriptional level to N-deprivation or to nitrate per se. Most of these genes have not been characterized previously. Further selection of TF genes based on the responses of selected candidates to other macronutrients and abiotic stresses allowed to distinguish between TFs regulated (i) specifically by nitrogen (29 genes) (ii) regulated by general macronutrient or by salt and osmotic stress (6 genes), and (iii) responding to all major macronutrients and to abiotic stresses. Most of the N-regulated TF genes were also regulated by carbon. Further characterization of sixteen selected TF genes, revealed: (i) lack of transcriptional response to organic nitrogen, (ii) two major types of kinetics of induction by nitrate, (iii) specific responses for the majority of the genes to nitrate but not downstream products of nitrate assimilation. All sixteen TF genes were cloned into binary vectors for constitutive and ethanol inducible over expression, and the first generation of transgenic plants were obtained for almost all of them. Some of the plants constitutively over expressing TF genes under control of the 35S promoter revealed visible phenotypes in T1 generation. Homozygous T-DNA knock out lines were also obtained for many of the candidate TF genes. So far, one knock out line revealed a visible phenotype: retardation of flowering time.<br><br> A forward genetic approach using an Arabidopsis ATNRT2.1 promoter : Luciferase reporter line, resulted in identification of eleven EMS mutant reporter lines affected in induction of ATNRT2.1 expression by nitrate. These lines could by divided in the following classes according to expression of other genes involved in primary nitrogen and carbon metabolism: (i) lines affected exclusively in nitrate transport, (ii) those affected in nitrate transport, acquisition, but also in glycolysis and oxidative pentose pathway, (iii) mutants affected moderately in nitrate transport, oxidative pentose pathway and glycolysis but not in primary nitrate assimilation. Thus, several different N-regulatory genes may have been mutated in this set of mutants. Map-based cloning has begun to identify the genes affected in these mutants. / Stickstoff ist einer der wichtigsten Makroelemente in der Natur und sein eingeschränktes Vorkommen ist häufig ein limitierender Faktor für pflanzliches Wachstum. In der Landwirtschaft eingesetzte Stickstoff-Dünger werden häufig nicht vollständig von Getreide- oder anderen kultivierten Pflanzen genutzt, sondern in die umliegenden Gewässer oder das Grundwasser ausgewaschen. Das Verständnis von pflanzlichen Signalprozessen kann helfen, Stickstoffaufnahme und -assimilation zu kontrollieren und somit den Einsatz von stickstoffhaltigen Düngemitteln in der Landwirtschaft zu reduzieren.<br><br> Die meisten der in den pflanzlichen Stickstoffstoffwechsel involvierten Gene werden auf Transkriptionsebene reguliert. Dies geschieht durch sogenannte Transkriptionsfaktoren (TFs), Proteine, die von Genen anderer Genfamilien kodiert werden. Im Rahmen dieser Promotion wurde eine einzigartige und neue Ressource zur Quantifizierung der Expressionsniveaus solcher Transkriptionsfaktoren der Modellpflanze <i>Arabidopsis thaliana</i> entwickelt und getestet. Dabei konnte die beispiellose Robustheit, Genauigkeit und Präzision dieser PCR-basierten Methode gezeigt werden. Mit Hilfe dieses experimentellen Aufbaus wurden Transkriptionsfaktoren, potentielle Regulatoren von Genen, die in Stickstoffmetabolismus involviert sind, identifiziert und charakterisiert. Um die Funktionsweise dieser Gene besser zu verstehen, wurden transgene Pflanzen erzeugt und identifiziert, die entweder erhöhte oder chemisch induzierbare Transkription und/oder einen partiellen oder vollständigen Verlust der Aktivität dieser Gene aufweisen. Die Analyse der Transkriptionsfaktoren, die unter die Kontrolle eines induzierbaren Promoters gestellt wurden, soll helfen, die genauen Zielgene dieser TFs zu identifizieren und ihre Rolle im Stickstoffmetabolismus zu erklären. Darüber hinaus bieten sie die Chance, Hierarchieebenen innerhalb der verschiedenen TFs zu erkennen. Überexpression von Transkriptionsfaktoren kann zur Generierung von Phänotypen führen, die von direktem biotechnologischen Interesse sind, wie z.B. Pflanzen mit erhöhtem Stickstoffgehalt (Aminosäuregehalt), die besser an Situationen mit Stickstoffmangel angepasst sind. Neben diesen Transkriptionsfaktoren wurden allerdings auch Mutanten mit einem genetischen Defekt in einem der wichtigsten Gene, das für den Nitrattransport in Wurzeln von <i>Arabidopsis</i> verantwortlich ist, identifiziert.

Understanding the transcriptional mechanisms that control hematopoiesis and the interaction between hematopoietic stem cells and the bone marrow (BM) microenvironment in vivo is of considerable interest. The calcineurin-dependent transcription factor NFAT (Nuclear Factor of Activated T cells) is known as master regulator of cytokine production in T lymphocytes and therefore central for T cell-dependent immune reactions, but has also been shown to regulate a process of differentiation and tissue adaptation in various cell types. The activation of NFAT is dependent on the calcium level within the cell. In resting cells, calcium levels are low and NFAT is cytoplasmic and inactive. A sustained increase in the internal calcium concentration within an external stimuli leads to activation of the calcium-dependent calcineurin, followed by dephosphorylation and nuclear translocation of NFAT. We have previously shown that NFATc2, a member of the NFAT family, is expressed in CD34+ hematopoietic stem cells (HSC). A mouse model harboring NFATc2 deficiency provides the opportunity for in vivo investigation of the role of NFATc2 in hematopoiesis. Our recent observations showed that aged mice lacking the transcription factor NFATc2 develop peripheral blood anemia and thrombocytopenia, BM hypoplasia and extramedullary hematopoiesis in spleen and liver. The proliferation and differentiation of NFATc2-deficient hematopoietic stem cells ex vivo, however, was found to be intact. It remained therefore unclear whether the disturbed hematopoiesis in NFATc2-deficient mice was caused by the hematopoietic or the stroma component of the BM hematopoietic niche. In the current study we dissected the relative contribution of hematopoietic and stroma cells to the phenotype of the NFATc2-deficent mice by transplanting immuno-magnetically purified NFATc2-deficient (KO) HSCs to lethally irradiated wild type (WT) mice, and vice versa. After a post-transplantation period of 6-8 months, peripheral blood, BM as well as spleen and liver of the transplanted animals were analyzed and compared to WT and KO mice transplanted with control cells. Transplantation of NFATc2-deficient HSCs into WT recipients (KO WT) induced similar hematological abnormalities as those occurring in non-transplanted KO mice or in KO mice transplanted with KO cells (KO KO). Compared to WT mice transplanted with WT cells (WT WT), KO WT mice showed evidence of anemia, thrombocytopenia and a significantly reduced number of hematopoietic cells in their BM. Likewise, KO WT mice developed clear signs of extramedullary hematopoiesis in spleen and liver, which was not the case in WT WT control animals. In addition to the hematopoietic abnormalities, transplantation of NFATc2-deficient HSC also induced osteogenic abnormalities such as BM sclerosis and fibrosis in WT mice. This phenomenon was rather subtle and of incomplete penetrance, but never seen in mice transplanted with WT cells. These data demonstrate for the first time, that the NFATc2 transcription factor directly regulates the intrinsic function of hematopoietic stem cells in vivo. However, the transcriptional targets for NFAT in these cells are yet unknown. In addition to hematopoietic stem cells, NFATc2 has been shown to be expressed in a lineage-specific manner during myeloid differentiation and, notably, is maintained during megakaryopoiesis while it is suppressed during the differentiation of neutrophils. Bone marrow megakaryocytes are the precursors of peripheral blood platelets and therefore constitute an integral part of primary hemostasis, thrombosis and wound healing. The biological role of NFAT in megakaryocytes is unknown. We have recently shown that NFATc2 is not necessary for megakaryocytic differentiation. On the other hand, recent evidence suggests that NFATc2 is required for the transcription of specific megakaryocytic genes. In this study, we showed that activation of the calcineurin/NFAT pathway in either primary megakaryocytes or CMK megakaryocytic cells forces the cells to go into apoptosis. Cell death in megakaryocytes is induced by treating the cells with the calcium ionophore ionomycin and suppressed by either the pan-caspase inhibitor zVAD or the calcineurin inhibitor cyclosporin A (CsA). Ionomycin stimulation of megakaryocytes leads to the expression of Fas Ligand (FASLG), a pro-apoptotic member of the tumor necrosis factor superfamily. Expression of FASLG was detectable as early as four hours after stimulation on the membrane of ionomycin-treated megakaryocytes, was augmented in cells stably overexpressing NFATc2, and was suppressed in cells either pretreated with CsA or expressing the specific peptide inhibitor of NFAT, VIVIT. To investigate the physiological relevance of FASLG expression on megakaryocytes, we performed co-cultures of megakaryocytes with Fas-expressing T-lymphocytes, in which CMK cells were left either unstimulated or pre-stimulated with ionomycin and then added to Jurkat cells. The presence of ionomycin-stimulated CMK cells, but not of unstimulated cells or cells stimulated in the presence of CsA, significantly induced apoptosis in Jurkat cells. Overexpression of NFATc2 in CMK cells enhanced their potency to induce apoptosis in Jurkat cells, while cells expressing VIVIT were less effective. Apoptosis induction of Jurkat cells by stimulated CMK cells was partially blocked by the presence of either a neutralizing antibody against FASLG or an antagonistic antibody to Fas during the co-culture period, indicating involvement of the FASLG/Fas apoptosis pathway. These results represent the first clear evidence for a biological function of the calcineurin/NFAT pathway in megakaryocytes, namely the regulation of Fas/FASLG-dependent apoptosis. Second, they underline that the biological role of megakaryocytes is not restricted to the production of proteins and other cellular structures for platelet assembly, but that this population of cells fulfills an independent regulatory function in the context of the surrounding tissue. Finally, we have identified by RNA sequencing analysis of NFATc2-expressing and -deficient cells, the entire set of genes which is induced by NFATc2 in stimulated megakaryocytes. Functional pathway analysis suggests an involvement of NFATc2 in pro-inflammatory pathways in these cells. The significance of these findings has to be addressed in further studies.

Leaf senescence is an active process required for plant survival, and it is flexibly controlled, allowing plant adaptation to environmental conditions. Although senescence is largely an age-dependent process, it can be triggered by environmental signals and stresses. Leaf senescence coordinates the breakdown and turnover of many cellular components, allowing a massive remobilization and recycling of nutrients from senescing tissues to other organs (e.g., young leaves, roots, and seeds), thus enhancing the fitness of the plant. Such metabolic coordination requires a tight regulation of gene expression. One important mechanism for the regulation of gene expression is at the transcriptional level via transcription factors (TFs). The NAC TF family (NAM, ATAF, CUC) includes various members that show elevated expression during senescence, including ORE1 (ANAC092/AtNAC2) among others. ORE1 was first reported in a screen for mutants with delayed senescence (oresara1, 2, 3, and 11). It was named after the Korean word “oresara,” meaning “long-living,” and abbreviated to ORE1, 2, 3, and 11, respectively. Although the pivotal role of ORE1 in controlling leaf senescence has recently been demonstrated, the underlying molecular mechanisms and the pathways it regulates are still poorly understood. To unravel the signaling cascade through which ORE1 exerts its function, we analyzed particular features of regulatory pathways up-stream and down-stream of ORE1. We identified characteristic spatial and temporal expression patterns of ORE1 that are conserved in Arabidopsis thaliana and Nicotiana tabacum and that link ORE1 expression to senescence as well as to salt stress. We proved that ORE1 positively regulates natural and dark-induced senescence. Molecular characterization of the ORE1 promoter in silico and experimentally suggested a role of the 5’UTR in mediating ORE1 expression. ORE1 is a putative substrate of a calcium-dependent protein kinase named CKOR (unpublished data). Promising data revealed a positive regulation of putative ORE1 targets by CKOR, suggesting the phosphorylation of ORE1 as a requirement for its regulation. Additionally, as part of the ORE1 up-stream regulatory pathway, we identified the NAC TF ATAF1 which was able to transactivate the ORE1 promoter in vivo. Expression studies using chemically inducible ORE1 overexpression lines and transactivation assays employing leaf mesophyll cell protoplasts provided information on target genes whose expression was rapidly induced upon ORE1 induction. First, a set of target genes was established and referred to as early responding in the ORE1 regulatory network. The consensus binding site (BS) of ORE1 was characterized. Analysis of some putative targets revealed the presence of ORE1 BSs in their promoters and the in vitro and in vivo binding of ORE1 to their promoters. Among these putative target genes, BIFUNCTIONAL NUCLEASE I (BFN1) and VND-Interacting2 (VNI2) were further characterized. The expression of BFN1 was found to be dependent on the presence of ORE1. Our results provide convincing data which support a role for BFN1 as a direct target of ORE1. Characterization of VNI2 in age-dependent and stress-induced senescence revealed ORE1 as a key up-stream regulator since it can bind and activate VNI2 expression in vivo and in vitro. Furthermore, VNI2 was able to promote or delay senescence depending on the presence of an activation domain located in its C-terminal region. The plasticity of this gene might include alternative splicing (AS) to regulate its function in different organs and at different developmental stages, particularly during senescence. A model is proposed on the molecular mechanism governing the dual role of VNI2 during senescence. / Der Alterungsprozess lebender Organismen wird seit vielen Jahren wissenschaftlich untersucht. In Pflanzen wird der Alterungsprozess Seneszenz genannt. Er ist für das Überleben der Pflanze von großer Bedeutung. Dennoch ist unser Wissen über die molekularen Mechanismen der Blattseneszenz, dessen komplexe Steuerung und die Wechselwirkungen mit Umweltsignale noch sehr limitiert. Ein wichtiges Steuerungselement besteht in der Aktivierung bestimmter Transkriptionsfaktoren (TFs) die während der Seneszenz unterschiedlich exprimiert werden. Aus der Literatur ist bekannt, dass Mitglieder der NAC TF Familie (NAM/ATAF/CUC) an der Regulation der Seneszenz bei Pflanzen beteiligt sind. ORE1 (ANAC092/AtNAC2), ein NAC TF mit erhöhter Genexpression während der Seneszenz, wurde erstmals in Mutanten mit verzögerte Seneszenz beschrieben, die molekularen Mechanismen, wie ORE1 die Seneszenz kontrolliert und die Stoffwechselwege reguliert, sind aber noch weitgehend unbekannt. Die Arbeiten im Rahmen dieser Dissertation wurden durchgeführt, um einen tieferen Einblick in die Regulationsmechanismen von ORE1 auf natürliche, dunkel induzierte sowie Salzstress-induzierte Seneszenz zu erhalten. Ergebnisse von Untersuchungen an zwei unterschiedlichen Pflanzenspezies (Arabidopsis thalinana und Nicotiana tabacum) deuten auf ein ähnliches Expressionsmuster von ORE1 während der natürlichen als auch der Salz-induzierten Seneszenz hin. In der Promotorregion von ORE1 wurde ein für natürliche Seneszenz charakteristisches Muster identifiziert. In vivo Analysen ergaben darüber hinaus. Hinweise auf zwei weitere ORE1 Regulatoren. Debei handelt es sich umeinen weiteren NAC TF (ATAF1) und (ii) CKOR, einer Calcium-abhängige Protein-Kinase (CDPK).In weiteren Studien wurden sechs Gene identifiziert, die durch ORE1 reguliert werden. In den Promotoren dieser Gene wurden entsprechende Bindestellen für ORE1 lokalisiert. Die ORE1-Bindung an die Promotoren wurde daraufhin sowohl in vitro als auch in vivo verifiziert. Zwei dieser Gene, die BIFUNCTIONAL Nuclease I (BFNI) und VND-Interacting2 (VNI2), wurden zudem auf molekularer und physiologischer Ebene untersucht.

Hohenheim, Univ., Diss., 2006.

München, Techn. University, Diss., 2005.

München, Techn. Univ., Diss., 2002.

Universiẗat, Diss., 2003--Köln.

Universiẗat, Diss., 2004--Düsseldorf.

Understanding the transcriptional mechanisms that control hematopoiesis and the interaction between hematopoietic stem cells and the bone marrow (BM) microenvironment in vivo is of considerable interest. The calcineurin-dependent transcription factor NFAT (Nuclear Factor of Activated T cells) is known as master regulator of cytokine production in T lymphocytes and therefore central for T cell-dependent immune reactions, but has also been shown to regulate a process of differentiation and tissue adaptation in various cell types. The activation of NFAT is dependent on the calcium level within the cell. In resting cells, calcium levels are low and NFAT is cytoplasmic and inactive. A sustained increase in the internal calcium concentration within an external stimuli leads to activation of the calcium-dependent calcineurin, followed by dephosphorylation and nuclear translocation of NFAT. We have previously shown that NFATc2, a member of the NFAT family, is expressed in CD34+ hematopoietic stem cells (HSC). A mouse model harboring NFATc2 deficiency provides the opportunity for in vivo investigation of the role of NFATc2 in hematopoiesis. Our recent observations showed that aged mice lacking the transcription factor NFATc2 develop peripheral blood anemia and thrombocytopenia, BM hypoplasia and extramedullary hematopoiesis in spleen and liver. The proliferation and differentiation of NFATc2-deficient hematopoietic stem cells ex vivo, however, was found to be intact. It remained therefore unclear whether the disturbed hematopoiesis in NFATc2-deficient mice was caused by the hematopoietic or the stroma component of the BM hematopoietic niche. In the current study we dissected the relative contribution of hematopoietic and stroma cells to the phenotype of the NFATc2-deficent mice by transplanting immuno-magnetically purified NFATc2-deficient (KO) HSCs to lethally irradiated wild type (WT) mice, and vice versa. After a post-transplantation period of 6-8 months, peripheral blood, BM as well as spleen and liver of the transplanted animals were analyzed and compared to WT and KO mice transplanted with control cells. Transplantation of NFATc2-deficient HSCs into WT recipients (KO WT) induced similar hematological abnormalities as those occurring in non-transplanted KO mice or in KO mice transplanted with KO cells (KO KO). Compared to WT mice transplanted with WT cells (WT WT), KO WT mice showed evidence of anemia, thrombocytopenia and a significantly reduced number of hematopoietic cells in their BM. Likewise, KO WT mice developed clear signs of extramedullary hematopoiesis in spleen and liver, which was not the case in WT WT control animals. In addition to the hematopoietic abnormalities, transplantation of NFATc2-deficient HSC also induced osteogenic abnormalities such as BM sclerosis and fibrosis in WT mice. This phenomenon was rather subtle and of incomplete penetrance, but never seen in mice transplanted with WT cells. These data demonstrate for the first time, that the NFATc2 transcription factor directly regulates the intrinsic function of hematopoietic stem cells in vivo. However, the transcriptional targets for NFAT in these cells are yet unknown. In addition to hematopoietic stem cells, NFATc2 has been shown to be expressed in a lineage-specific manner during myeloid differentiation and, notably, is maintained during megakaryopoiesis while it is suppressed during the differentiation of neutrophils. Bone marrow megakaryocytes are the precursors of peripheral blood platelets and therefore constitute an integral part of primary hemostasis, thrombosis and wound healing. The biological role of NFAT in megakaryocytes is unknown. We have recently shown that NFATc2 is not necessary for megakaryocytic differentiation. On the other hand, recent evidence suggests that NFATc2 is required for the transcription of specific megakaryocytic genes. In this study, we showed that activation of the calcineurin/NFAT pathway in either primary megakaryocytes or CMK megakaryocytic cells forces the cells to go into apoptosis. Cell death in megakaryocytes is induced by treating the cells with the calcium ionophore ionomycin and suppressed by either the pan-caspase inhibitor zVAD or the calcineurin inhibitor cyclosporin A (CsA). Ionomycin stimulation of megakaryocytes leads to the expression of Fas Ligand (FASLG), a pro-apoptotic member of the tumor necrosis factor superfamily. Expression of FASLG was detectable as early as four hours after stimulation on the membrane of ionomycin-treated megakaryocytes, was augmented in cells stably overexpressing NFATc2, and was suppressed in cells either pretreated with CsA or expressing the specific peptide inhibitor of NFAT, VIVIT. To investigate the physiological relevance of FASLG expression on megakaryocytes, we performed co-cultures of megakaryocytes with Fas-expressing T-lymphocytes, in which CMK cells were left either unstimulated or pre-stimulated with ionomycin and then added to Jurkat cells. The presence of ionomycin-stimulated CMK cells, but not of unstimulated cells or cells stimulated in the presence of CsA, significantly induced apoptosis in Jurkat cells. Overexpression of NFATc2 in CMK cells enhanced their potency to induce apoptosis in Jurkat cells, while cells expressing VIVIT were less effective. Apoptosis induction of Jurkat cells by stimulated CMK cells was partially blocked by the presence of either a neutralizing antibody against FASLG or an antagonistic antibody to Fas during the co-culture period, indicating involvement of the FASLG/Fas apoptosis pathway. These results represent the first clear evidence for a biological function of the calcineurin/NFAT pathway in megakaryocytes, namely the regulation of Fas/FASLG-dependent apoptosis. Second, they underline that the biological role of megakaryocytes is not restricted to the production of proteins and other cellular structures for platelet assembly, but that this population of cells fulfills an independent regulatory function in the context of the surrounding tissue. Finally, we have identified by RNA sequencing analysis of NFATc2-expressing and -deficient cells, the entire set of genes which is induced by NFATc2 in stimulated megakaryocytes. Functional pathway analysis suggests an involvement of NFATc2 in pro-inflammatory pathways in these cells. The significance of these findings has to be addressed in further studies.

Ubiquitination is a posttranslational modification with immense impact on a wide range of cellular processes, including proteasomal degradation, membrane dynamics, transcription, translation, cell cycle, apoptosis, DNA repair and immunity. These diverse functions stem from the various ubiquitin chain types, topologies, and attachment sites on substrate proteins. Substrate recruitment and modification on lysine, serine or threonine residues is catalyzed by ubiquitin ligases (E3s). An important E3 that decides about the fate of numerous substrates is the HECT-type ubiquitin ligase HUWE1. Depending on the substrate, HUWE1 is involved in different processes, such as cell proliferation and differentiation, DNA repair, and transcription. One of the transcription factors that is ubiquitinated by HUWE1 is the MYC interacting zinc finger protein 1 (MIZ1). MIZ1 is a BTB/POZ (Bric-à-brac, Tramtrack and Broad-Complex/Pox virus and zinc finger) zinc finger (ZF) protein that binds to DNA through its 13 C2H2-type zinc fingers and either activates or represses the transcription of target genes, including genes involved in cell cycle arrest, such as P21CIP1 (CDKN1A). The precise functions of MIZ1 depend on its interactions with the MYC-MAX heterodimer, but also its heterodimerization with other BTB-ZF proteins, such as BCL6 or NAC1. How MIZ1 interacts with HUWE1 has not been studied and, as a consequence, it has not been possible to rationally develop tools to manipulate this interaction with specificity in order to better understand the effects of the interaction on the transcriptional function of MIZ1 on target genes or processes downstream. One aspect of my research, therefore, aimed at characterizing the MIZ1-HUWE1 interaction at a structural level. I determined a crystal structure of the MIZ1-BTB-domain in complex with a peptide, referred to as ASC, derived from a C terminal region of HUWE1, previously named ‘activation segment’. The binding mode observed in this crystal structure could be validated by binding and activity assays in vitro and by cell-based co-IP experiments in the context of N-terminally truncated HUWE1 constructs. I was not able to provide unambiguous evidence for the identified binding mode in the context of full-length HUWE1, indicating that MIZ1 recognition by HUWE1 requires yet unknown regions in the cell. While the structural details of the MIZ1-HUWE1 interaction remains to be elucidated in the context of the full-length proteins, the binding mode between MIZ1BTB and ASC revealed an interesting, atypical structural feature of the BTB domain of MIZ1 that, to my knowledge, has not been described for other BTB-ZF proteins: The B3 region in MIZ1BTB is conformationally malleable, which allows for a HUWE1-ASC-peptide-mediated β-sheet extension of the upper B1/B2-strands, resulting in a mixed, 3 stranded β-sheet. Such β-sheet extension does not appear to occur in other homo- or heterodimeric BTB-ZF proteins, including MIZ1-heterodimers, since these proteins typically possess a pre-formed B3-strand in at least one subunit. Instead, BCL6 co repressor-derived peptides (SMRT and BCOR) were found to extend the lower β-sheet in BCL6BTB by binding to an adjacent ‘lateral groove’. This interaction follows a 1:1 stoichiometry, whereas the MIZ1BTB-ASC-complex shows a 2:1 stoichiometry. The crystal structure of the MIZ1BTB-ASC-complex I determined, along with comparative binding studies of ASC with monomeric, homodimeric, and heterodimeric MIZ1BTB variants, respectively, suggests that ASC selects for MIZ1BTB homodimers. The structural data I generated may serve as an entry point for the prediction of additional interaction partners of MIZ1 that also have the ability to extend the upper β-sheet of MIZ1BTB. If successful, such interaction partners and structures thereof might aid the design of peptidomimetics or small-molecule inhibitors of MIZ1 signaling. Proof-of-principle for such a structure-guided approach targeting BTB domains has been provided by small-molecule inhibitors of BCL6BTB co-repressors interactions. If a similar approach led to molecules that interfere with specific interactions of MIZ1, they would provide intriguing probes to study MIZ1 biology and may eventually allow for the development of MIZ1-directed cancer therapeutics. / Ubiquitinierung ist eine posttranslationale Modifikation mit weitreichendem Einfluss auf eine Vielzahl von zellulären Prozessen, wie proteasomale Degradation, Membrandynamik, Transkription, Translation, Zellzyklus, Apoptose, DNA-Reparatur und Immunität. Grundlage für diese Diversität ist die Möglichkeit, dass Substrate an unterschiedlichen Stellen mit verschiedenen Ubiquitin-Kettentypen modifiziert werden können. Die Substratrekrutierung und -modifikation an Lysin-, Serin oder Threonin Resten wird durch Ubiquitin-Ligasen (E3s) katalysiert. Eine wichtige Ubiquitin-Ligase, die zahlreiche Substrate reguliert, ist die HECT-Ligase HUWE1. Abhängig vom Substrat ist HUWE1 an verschiedenen Prozessen, wie der Zellproliferation und -differenzierung, DNA-Reparatur, aber auch Transkription beteiligt. Ein Transkriptionsfaktor, der von HUWE1 ubiquitiniert wird, ist MIZ1 (MYC interacting zinc finger protein 1). MIZ1 ist ein BTB/POZ (Bric-à-brac, Tramtrack and Broad-Complex/Pox Virus and Zinc finger) Zinkfinger(ZF)-Protein, das über seine 13 C2H2 Zinkfinger an DNA bindet und so die Transkription von verschiedenen Zielgenen aktivieren oder reprimieren kann. MIZ1-Zielgene sind unter anderem am Zellzyklusarrest beteiligt, wie z.B. das Gen P21CIP1 (CDKN1A). Die biologischen Funktionen von MIZ1 werden unter anderem durch seine Interaktion mit dem MYC MAX-Heterodimer, aber auch durch Heterodimerisierung mit anderen BTB ZF Proteinen, wie BCL6 oder NAC1, reguliert. Wie MIZ1 mit der HUWE1-Ligase interagiert, wurde bislang strukturell noch nicht untersucht, weshalb noch nicht gezielt kleine Moleküle zur Manipulation der Interaktion entwickelt werden konnten, um Einfluss auf die transkriptionellen Funktionen von MIZ1 oder seiner Zielgene zu nehmen. Meine Untersuchungen zielten daher unter anderem darauf ab, die MIZ1-HUWE1-Interaktion auf struktureller Ebene zu charakterisieren. Ich konnte eine Kristallstruktur der MIZ1-BTB-Domäne in Komplex mit dem HUWE1-Peptid ASC lösen, dessen Sequenz in der C-terminalen Region von HUWE1 zu finden ist und zuvor als „activation segment“ definiert wurde. Der in dieser Kristallstruktur beobachtete Bindungsmodus konnte durch Bindungs- und Aktivitätsassays in vitro und durch co-IP-Experimente in zellbasierten Assays validiert werden, jedoch nur im Zusammenhang mit N-terminal verkürzten HUWE1 Konstrukten. Es war mir nicht möglich, diesen Bindungsmodus im Kontext des HUWE1-Proteins voller Länge nachzuweisen, was darauf hindeutet, dass bei der MIZ1-Erkennung durch HUWE1 in der Zelle andere Regionen beteiligt sein könnten. Während die strukturellen Details der MIZ1-HUWE1-Interaktion im Kontext der Proteine voller Länge noch aufgeklärt werden müssen, zeigte der Bindungsmodus zwischen MIZ1BTB und ASC ein atpyisches Strukturmerkmal der BTB-Domäne von MIZ1, das meines Wissens bislang in keinem anderen BTB-ZF-Protein beschrieben wurde: Die B3-Region in MIZ1BTB zeigt eine untypische konformationelle Flexibilität, die es erlaubt, dass das HUWE1-ASC-Peptid die B1/B2-Stränge im oberen Segment von MIZ1BTB zu einem 3-strängigen β-Faltblatt erweitert. Eine solche β-Faltblatt-Erweiterung scheint in anderen homo- oder heterodimeren BTB-ZF-Proteinen, einschließlich MIZ1-Heterodimeren, nicht aufzutreten, da diese Proteine typischerweise bereits einen B3-Strang in mindestens einer Untereinheit aufweisen. Stattdessen konnte beobachtet werden, dass Peptidliganden, wie sie von den BCL6 Co-Repressoren SMRT und BCOR abgeleitet wurden, ein β-Faltblatt im unteren Segment von BCL6BTB erweitern, indem sie in der sogenannten „lateral groove“ binden, die in unmittelbarer Nähe des betreffenden β-Faltblattes lokalisiert ist. Während die Interaktion von BCL6BTB mit Co-Repressor-Peptiden eine 1:1 Stöchiometrie zeigt, beobachtete ich für den MIZ1BTB-ASC-Komplex eine 2:1 Stöchiometrie. Die Kristallstruktur des MIZ1BTB-ASC-Komplexes, zusammen mit Bindungsassays, die die Interaktion zwischen ASC und monomerem, homodimerem bzw. heterodimerem MIZ1BTB untersuchten, deuten darauf hin, dass ASC spezifisch mit MIZ1BTB-Homodimeren interagiert. Daher könnten die von mir gewonnenen Strukturinformationen dazu dienen, weitere MIZ1-Bindungspartner vorherzusagen. Falls erfolgreich, könnten die neu identifizierten Interaktionspartner und zugehörige Strukturen dazu genutzt werden, Peptidomimetika und niedermolekulare Inhibitoren zu entwickeln, die spezifische Interaktionen von MIZ1 und die zugehörigen zellulären Prozesse stören und somit als Werkzeuge zum besseren Verständnis der MIZ1 Biologie dienen könnten. Vorbild dabei können zahlreiche niedermolekulare Verbindungen sein, die zur Störung der Co-Repressor-Peptid-Bindung an BCL6BTB entwickelt wurden. Wenn es auf ähnliche Weise gelänge, spezifischen Einfluss auf die transkriptionelle Funktion von MIZ1 zu nehmen, so könnte dies von hohem therapeutischen Nutzen in der Bekämpfung verschiedener Krebsarten sein.