Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2010. / Cataloged from PDF version of thesis. / Includes bibliographical references. / This thesis presents the results of four discrete investigations into processes governing the organic and inorganic chemical composition of seafloor hydrothermal fluids in a variety of geologic settings. Though Chapters 2 through 5 of this thesis are disparate in focus, each represents a novel investigation aimed at furthering our understanding of subsurface geochemical processes affecting hydrothermal fluid compositions. Chapters 2 and 3 concern the abiotic (nonbiological) formation of organic compounds in high temperature vent fluids, a process which has direct implications for the emergence of life in early Earth settings and sustainment of present day microbial populations in hydrothermal environments. Chapter 2 represents an experimental investigation of methane (CH4) formation under hydrothermal conditions. The overall reduction of carbon dioxide (C02) to CH4, previously assumed to be kinetically inhibited in the absence of mineral catalysts, is shown to proceed on timescales pertinent to crustal residence times of hydrothermal fluids. In Chapter 3, the abundance of methanethiol (CH3SH), considered to be a crucial precursor for the emergence of primitive chemoautotrophic life, is characterized in vent fluids from ultramafic-, basalt- and sediment-hosted hydrothermal systems. Previous assumptions that CH3SH forms by reduction of CO2 are not supported by the observed distribution in natural systems. Chapter 4 investigates factors regulating the hydrogen isotope composition of hydrocarbons under hydrothermal conditions. Isotopic exchange between low molecular weight n-alkanes and water is shown to be facilitated by metastable equilibrium reactions between alkanes and their corresponding alkenes, which are feasible in natural systems. In Chapter 5, the controls on vent fluid composition in a backare hydrothermal system are investigated. A comprehensive survey of the inorganic geochemistry of fluids from sites of hydrothermal activity in the eastern Manus Basin indicates that fluids there are influenced by input of acidic magmatic solutions at depth, and subsequently modified by variable extents of seawater entrainment and mixing-related secondary acidity production. / by Eoghan Reeves. / Ph.D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Key players in the marine carbon cycle are the ocean-dwelling microbes that fix, remineralize, and transform organic matter. Many of the small organic molecules in the marine carbon pool have not been well characterized and their roles in microbial physiology, ecological interactions, and carbon cycling remain largely unknown. In this dissertation metabolomics techniques were developed and used to profile and quantify a suite of metabolites in the field and in laboratory experiments. Experiments were run to study the way a specific metabolite can influence microbial metabolite output and potentially processing of organic matter. Specifically, the metabolic response of the heterotrophic marine bacterium, Ruegeria pomeroyi, to the algal metabolite dimethylsulfoniopropionate (DMSP) was analyzed using targeted and untargeted metabolomics. The manner in which DMSP causes R. pomeroyi to modify its biochemical pathways suggests anticipation by R. pomeroyi of phytoplankton-derived nutrients and higher microbial density. Targeted metabolomics was used to characterize the latitudinal and vertical distributions of particulate and dissolved metabolites in samples gathered along a transect in the Western Atlantic Ocean. The assembled dataset indicates that, while many metabolite distributions co-vary with biomass abundance, other metabolites show distributions that suggest abiotic, species specific, or metabolic controls on their variability. On sinking particles in the South Atlantic portion of the transect, metabolites possibly derived from degradation of organic matter increase and phytoplankton-derived metabolites decrease. This work highlights the role DMSP plays in the metabolic response of a bacterium to the environment and reveals unexpected ways metabolite abundances vary between ocean regions and are transformed on sinking particles. Further metabolomics studies of the global distributions and interactions of marine biomolecules promise to provide new insights into microbial processes and metabolite cycling. / by Winifred M. Johnson. / Ph. D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2018. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Nutrients and trace metals are vital for supporting life in the ocean, but the boundary processes that control the distributions of these elements are poorly constrained. Radium isotopes are well suited to studying inputs of elements from ocean margins because they are produced in sediments and soluble in seawater. The half-lives of the four isotopes (223Ra, 224Ra, 228Ra, 226Ra) range from days to thousands of years, thus these isotopes can be used to study oceanographic processes occurring over a range of time scales. In this thesis I have applied the quartet of radium isotopes to investigate boundary inputs, including seafloor hydrothermal vents, continental shelves, and rivers. First, radium isotope ratios were used to constrain the age of hydrothermal plumes emanating from vents along the Mid-Atlantic Ridge and East Pacific Rise. These radium-derived ages were applied to determine the iron residence time in the Pacific plume that emanates from near 15°S, providing an important constraint on the hydrothermal delivery of iron to the deep ocean. Next, 228Ra was used to show that shelf inputs to the Arctic Ocean have increased over the last decade, implying that the fluxes of other shelf-derived materials are also increasing and could impact primary production in this basin. The ratio of 228Ra and 226Ra was also applied to determine the ventilation time of Arctic intermediate waters with respect to shelf inputs, and the first measurements of 226Ra in the deep Canada Basin were used to estimate the residence time of deep waters with respect to benthic sediment inputs. Finally, a study of the Mackenzie River Estuary illustrated the importance of deltaic and estuarine processing on the ultimate delivery of nutrients, trace metals, dissolved organic matter, and radium to the Arctic Ocean. By applying radium isotopes as tracers of boundary inputs in these diverse environments, the work presented in this thesis improves our understanding of nutrient and trace metal inputs to the coastal and open ocean. / by Lauren Elizabeth Kipp. / Ph. D.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2013. / Cataloged from PDF version of thesis. / Includes bibliographical references. / This thesis investigates three processes that control the evolution of oceanic margins. Chapter 2 presents seismic images of a ~2-km-thick evaporite body in Guaymas Basin, central Gulf of California. In rifts, evaporites form under conditions unique to the latest stages of continental rupture, and the presence, age, thickness, and shape place new constraints on the history of early rifting there. Chapter 3 presents numerical experiments that show that diapirs can form in sediments on the down-going plate in subduction zones and rise into the mantle wedge, delivering the sedimentary component widely observed in arc magmas. Chapter 4 presents measurements of seismic anisotropy from wide-angle, active-source data from the Middle America Trench that address the hypothesis that the upper mantle is hydrated by seawater flowing along outer-rise normal faults. These measurements indicate that the upper mantle is ~1.57 to 6.89% anisotropic, and this anisotropy can be attributed to bending-related faulting and an inherited mantle fabric. Accounting for anisotropy reduces previous estimates for the amount of water stored in the upper mantle of the down-going plate from ~2.5 to 1.5 wt%, a significant change in subduction zone water budgets. / by Nathaniel Clark Miller. / Ph.D.

Thesis: Ph. D., Massachusetts Institute of Technology, Department of Biology, 2017. / Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Biology; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Blooms of the dinoflagellate Alexandrium catenella cause paralytic shellfish poisoning syndrome and present an expanding public health threat. They are inoculated through the germination of benthic cysts, a process regulated by internal and environmental factors, most importantly temperature. Less understood is the effect of temperature conditioning on cyst dormancy cycling, which inhibits germination for long periods. This thesis characterizes the temperature-dependence of both dormancy and germination in natural A. catenella cyst populations from Nauset Marsh (Cape Cod, MA, USA), a small estuarine embayment, and relates these processes to the phenology of blooms there. Through laboratory germination assays, it is shown that dormant A. catenella cysts require a quantifiable amount of chilling to exit dormancy and attain quiescence (i.e. become germinable). A series of experiments compares germination rates of quiescent cysts across a range of temperatures through laboratory experiments and field incubations of raw sediment using plankton emergence traps (PETs). Emergence rates of A. catenella germlings measured by PETs increased linearly with temperature and were comparable to germination under constant laboratory conditions. Total emergence fluxes were much lower than expected, suggesting that germination occurs in a much shallower layer of sediments than typically assumed. The results are synthesized to develop a temperature-dependent model to examine the sensitivity of A. catenella bloom phenology to dormancy-breaking by winter chilling. Notably, the chilling-alleviated dormancy model accurately predicted the timing of quiescence (January) and the variable bloom phenology from multiple blooms in Nauset. Once cysts became quiescent and began to germinate, however, temperatures were typically too cold for growth to exceed losses so there was a several-week lag until bloom development. Years with warmer winters and springs had shorter lag periods and thus significantly earlier blooms. Ecologically, dormancy-breaking by a chilling threshold is advantageous because it prevents the mismatch between conditions that are favorable for germination but not for the formation of large blooms. Synchronized germination after winter chilling also promotes promotes efficient conversion from the cyst seedbed to the spring bloom inoculum. The dormancy mechanism characterized here may be present in other cyst-forming dinoflagellates, but there is likely plasticity that reflects the temperature regime of each habitat. / by Alexis Dal Fischer. / Ph. D.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2012. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Radioactive isotopes can be used in paleoceanography both for dating samples and as tracers of ocean processes. Here I use radiocarbon and uranium series isotopes to investigate the ocean's role in climate change over the last deglaciation. I present a new method for rapid radiocarbon analyses as a means of age-screening deep-sea corals for further study. Based on age survey results, I selected forty corals from the Drake Passage and thirteen from the Reykjanes Ridge off Iceland and dated them with uranium series isotopes. The uranium series dates give independent ages that allow radiocarbon to be used as a tracer of circulation and carbon cycle changes. The radiocarbon records generated from the Drake Passage corals show increased stratification in the Southern Ocean during the last glacial maximum (LGM) that disappeared during the start of the deglaciation as atmospheric CO2 began to rise during Heinrich Stadial 1 (HI). Considering these data and using a simple mass budget calculation, I show that the drop in atmospheric radiocarbon activity during H1 can be explained given direct carbon exchange between the radiocarbon-depleted deep ocean and atmosphere, e.g. through the Southern Ocean. The Drake Passage radiocarbon records also show evidence for decreased air-sea gas exchange in the Southern Ocean during the Antarctic Cold Reversal/Belling-Allered coincident with the hiatus in the deglacial CO2 rise. During this time period in the North Atlantic, radiocarbon reconstructions from deep-sea corals collected from off Iceland show a similar ventilation rate to that observed today and during the Holocene. To further investigate changes in North Atlantic ventilation over the last deglaciation, I used an inverse model to assess the consistency of sedimentary 2m1 Pa/ 230Th ratios from the Holocene, Hl, and the LGM with the modern circulation. Although sedimentary 231Pa/230Th has been used to infer changes in the strength of the meridional overturning circulation in the past, I find that published data are consistent with the modern circulation during the LGM and Hi. These findings highlight the importance of giving due regard to the uncertainties in the behavior and spatial distribution of paleoceanographic tracers. / by Andrea Burke. / Ph.D.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2003. / In title on t.p., "[Beta]" appears as the Greek letter. / Includes bibliographical references (p. 81-84). / by Shinichiro Kida. / S.M.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2013. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Predicting the response of net community calcification (NCC) to ocean acidification OA and declining aragonite saturation state [Omega]a requires a thorough understanding of controls on NCC. The diurnal control of light and net community production (NCP) on NCC confounds the underlying control of [Omega]a on NCC and must be averaged out in order to predict the general response of NCC to OA. I did this by generating a general NCC-[Omega]a correlation based on data from 15 field and mesocosm studies around the globe. The general relationship agrees well with results from mesocosm experiments. This general relationship implies that NCC will transition from net calcification to net dissolution at a [Omega]a of 1.0 ± 0.6 and predicts that NCC will decline by 50% from 1880 to 2100, for a reef of any percent calcifier cover and short reef water residence time. NCC will also decline if percent calcifier cover declines, as evidenced by estimates of NCC in two Caribbean reefs having declined by an estimated 50-90% since 1880. The general NCC-([Omega]a relationship determined here, along with changes in percent calcifier cover, will be useful in predicting changes in NCC in response to OA and for refining models of reef water [Omega]a. / by Whitney Nicole Bernstein. / Ph.D.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), September 2011. / "September 2011." "©2011"--P. 2. Cataloged from PDF version of thesis. / Includes bibliographical references (p. 97-101). / The ocean depths provide an ever changing and complex imaging environment. As scientists and researches strive to document and study more remote and optically challenging areas, specifically scatter-limited environments. There is a requirement for new illumination systems that improve both image quality and increase imaging distance. One of the most constraining optical properties to underwater image quality are scattering caused by ocean chemistry and entrained organic material. By reducing the size of the scatter interaction volume, one can immediately improve both the focus (forward scatter limited) and contrast (backscatter limited) of underwater images. This thesis describes a relatively simple, cost-effective and field-deployable low-power dynamic lighting system that minimizes the scatter interaction volume with both subjective and quantifiable improvements in imaging performance. / by Geoffrey Allen Gorman. / S.M.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science; and the Woods Hole Oceanographic Institution), 2002. / Includes bibliographical references (p. 151-154). / by Rajesh Rao Naduditi. / S.M.