Abscisic acid (ABA) is a major plant hormone that plays an important role during plant growth and development. During vegetative growth ABA mediates (in part) responses to various environmental stresses such as cold, drought and high salinity. The response triggered by ABA includes changes in the transcript level of genes involved in stress tolerance. The aim of this project was the In silico identification of genes putatively regulated by ABA in A. thaliana. In silico predictions were combined with experimental data in order to evaluate the reliability of computational predictions.<br><br> Taking advantage of the genome sequence of <i>A. thaliana</i> publicly available since 2000, 1 kb upstream sequences were screened for combinations of cis-elements known to be involved in the regulation of ABA-responsive genes. It was found that around 10 to 20 percent of the genes of <i>A. thaliana</i> might be regulated by ABA.<br><br> Further analyses of the predictions revealed that certain combinations of cis-elements that confer ABA-responsiveness were significantly over-represented compared with results in random sequences and with random expectations. In addition, it was observed that other combinations that confer ABA-responsiveness in monocotyledonous species might not be functional in A. thaliana. It is proposed that ABA-responsive genes in <i>A. thaliana</i> show pairs of ABRE (abscisic acid responsive element) with MYB binding sites, DRE (dehydration responsive element) or with itself.<br><br> The analysis of the distances between pairs of cis-elements suggested that pairs of ABREs are bound by homodimers of ABRE binding proteins. In contrast, pairs between MYB binding sites and ABRE, or DRE and ABRE showed a distance between cis-elements that suggested that the binding proteins interact through protein complexes and not directly.<br><br> The comparison of computational predictions with experimental data confirmed that the regulatory mechanisms leading to the induction or repression of genes by ABA is very incompletely understood. It became evident that besides the cis-elements proposed in this study to be present in ABA-responsive genes, other known and unknown cis-elements might play an important role in the transcriptional regulation of ABA-responsive genes. For example, auxin-related cis elements, or the cis-elements recognized by the NAM-family of transcription factors (Non-Apical meristem).<br><br> This work documents the use of computational and experimental approaches to analyse possible interactions between cis-elements involved in the regulation of ABA-responsive genes. The computational predictions allowed the distinction between putatively relevant combinations of cis-elements from irrelevant combinations of cis-elements in ABA-responsive genes. The comparison with experimental data allowed to identify certain cis-elements that have not been previously associated to the ABA-mediated transcriptional regulation, but that might be present in ABA-responsive genes (e.g. auxin responsive elements). Moreover, the efforts to unravel the gene regulatory network associated with the ABA-signalling pathway revealed that NAM-transcription factors and their corresponding binding sequences are important components of this network. / Pflanzen reagieren auf aeußere Stresseinwirkung (z.B. Trockenheit oder Hitze) u.a. mit der Bildung bestimmter Hormone. Diese Hormone wiederum bewirken eine Vielzahl komplexer Reaktionen (z.B. im Stoffwechsel und in der Genexpression), die zum Ziel haben, die Pflanzen widerstandsfaehiger gegen die Stresssituation zu machen. Ein wichtiges Stresshormon ist die Abzisinsaeure (ABA, fuer engl. „abscisic acid“). Experimentell koennen Pflanzen durch die Gabe von ABA zu Reaktionen gezwungen werden, die normalerweise nur unter Stressbedingungen beobachtet werden. Hierzu zaehlen vor allem eine Reduktion der Spaltoeffnungen in den Blaettern, um den Wasserverlust infolge von Transpiration zu minimieren, und eine massive Umprogrammierung der Genexpression.<br><br> In der vorliegenden Arbeit wurde der Einfluss von ABA auf die Genexpression in der Modellpflanze <i>Arabidopsis thaliana</i> untersucht. Hierzu wurden bioinformatorische und experimentelle Ansaetze verknuepft. Die bioinformatorischen Ansaetze bedienten sich der bekannten Sequenz des Genoms von <i>A. thaliana</i>. Mit Hilfe verschiedener geeigneter Computerprogramme wurden im Genom Gene identifiziert, deren Expression potentiell durch ABA reguliert wird. Die so erhaltenen Vorhersagen der verschiedenen Programme wurden miteinander und mit eigenen als auch mit publizierten experimentellen Daten verglichen, um die Qualitaet der Vorhersagen zu beurteilen. <br><br> Die wichtigste Schlussfolgerung aus den Ergebnissen dieser Arbeit ist, dass gegenwaertig bioinformatorische Ansaetze allein nicht ausreichen, um biologische Prozesse zufriedenstellend zu analysieren. In der vorliegenden Arbeit ermoeglichte erst eine Kombination aus bioinformatorischen und experimentellen Ansaetzen die Generierung neuer, abgesicherter Hypothesen zur ABA-induzierten Umprogrammierung der Genexpression.

Cuscuta or dodder is one of the best known higher plant parasite with around 158 species over 5 continents parasitising a wide variety of host plants (Yuncker,1932) Dodders are characterised by their interesting parasitic behaviour and extraordinary appearance among the obligate parasitic flowering plants (Kuijt, 1969)

Preharvest sprouting (PHS), the germination of seeds on the maternal plant before harvest, is a big challenge for barley producers worldwide. It is attributed mainly to low seed dormancy. The balance between two classical plant hormones, gibberellin (GA) and abscisic acid (ABA) regulates seed dormancy and germination, and the endogenous level of these two hormones in plants is determined by their biosynthesis and catabolism. This thesis characterized the expression patterns of the major GA and ABA metabolism genes in barley cv. Betzes during seed development, and germination in both dormant and non-dormant seeds. The results indicate that specific gene family members of the two hormones play distinct temporal roles in regulating seed development, dormancy onset and release, and germination. Since only two genes encoding the GA deactivating GA 2-oxidase enzyme have been known so far in barley, this study also identified two new GA2ox genes designated as HvGA2ox1 and HvGA2ox3.

Preharvest sprouting (PHS), the germination of seeds on the maternal plant before harvest, is a big challenge for barley producers worldwide. It is attributed mainly to low seed dormancy. The balance between two classical plant hormones, gibberellin (GA) and abscisic acid (ABA) regulates seed dormancy and germination, and the endogenous level of these two hormones in plants is determined by their biosynthesis and catabolism. This thesis characterized the expression patterns of the major GA and ABA metabolism genes in barley cv. Betzes during seed development, and germination in both dormant and non-dormant seeds. The results indicate that specific gene family members of the two hormones play distinct temporal roles in regulating seed development, dormancy onset and release, and germination. Since only two genes encoding the GA deactivating GA 2-oxidase enzyme have been known so far in barley, this study also identified two new GA2ox genes designated as HvGA2ox1 and HvGA2ox3.

Hormones control plant development by coordinating changes in the expression of numerous genes at crucial times in a tissue and organ-specific manner. They have been implicated in controlling various aspects of grape berry development, in particular, the important process of ripening and are used in some crops to control growth and ripening. Abscisic acid (ABA), is associated in grapevine with the response to water stress but may also have a role in berry ripening. We have shown over three seasons that ABA levels in Cabernet Sauvignon berries increase dramatically at veraison, consistent with it being involved either as a trigger for ripening or as a response to the increase in sugars that occurs at this time. Net ABA accumulation doesn't occur until veraison, the decrease in ABA concentration in the first phase of berry development being due to berry expansion. The decrease in ABA that occurs later in development is likely to be due to a combination of catabolism and sequestration into the bound form. The genes crucial to ABA synthesis, 9-cis-epoxycarotenoid dioxygenase (NCED) and zeaxanthin epoxidase (ZEP), were expressed throughout berry development and no clear correlation was found between their levels and that of ABA. Laboratory studies have shown that isolated berries respond to the presence of sucrose through an increase in ABA biosynthesis pathway gene expression (NCED and ZEP). This resulted in de novo synthesis of ABA as inhibition of the carotenoid synthesis pathway by a phytoene desaturase inhibitor prevented ABA accumulation. Replicated field trials clearly showed that ABA treatments can be effective in significantly enhancing ripening when applied in at or near the end of the first period of berry expansion. Colour accumulation in the skins commenced earlier in ABA-treated fruit as did the increase in sugar levels. ABA treatment also advanced the timing of the second phase of berry expansion as it appeared to eliminate the lag phase of berry growth. Taken together these data demonstrate that ABA is likely to play some part in the control of berry ripening and can be used to advance the timing of ripening. Further investigation into the characteristics of ABA-treated fruit will be needed to investigate the compositional character of treated fruit and to gauge its suitability for winemaking. An ability to control the timing of ripening may provide considerable benefits to the wine industry in terms of wine style/quality and for winery scheduling. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1278807 / Thesis (Ph.D.) - The University of Adelaide, School of Agriculture, Food & Wine, 2007.

Hormones control plant development by coordinating changes in the expression of numerous genes at crucial times in a tissue and organ-specific manner. They have been implicated in controlling various aspects of grape berry development, in particular, the important process of ripening and are used in some crops to control growth and ripening. Abscisic acid (ABA), is associated in grapevine with the response to water stress but may also have a role in berry ripening. We have shown over three seasons that ABA levels in Cabernet Sauvignon berries increase dramatically at veraison, consistent with it being involved either as a trigger for ripening or as a response to the increase in sugars that occurs at this time. Net ABA accumulation doesn't occur until veraison, the decrease in ABA concentration in the first phase of berry development being due to berry expansion. The decrease in ABA that occurs later in development is likely to be due to a combination of catabolism and sequestration into the bound form. The genes crucial to ABA synthesis, 9-cis-epoxycarotenoid dioxygenase (NCED) and zeaxanthin epoxidase (ZEP), were expressed throughout berry development and no clear correlation was found between their levels and that of ABA. Laboratory studies have shown that isolated berries respond to the presence of sucrose through an increase in ABA biosynthesis pathway gene expression (NCED and ZEP). This resulted in de novo synthesis of ABA as inhibition of the carotenoid synthesis pathway by a phytoene desaturase inhibitor prevented ABA accumulation. Replicated field trials clearly showed that ABA treatments can be effective in significantly enhancing ripening when applied in at or near the end of the first period of berry expansion. Colour accumulation in the skins commenced earlier in ABA-treated fruit as did the increase in sugar levels. ABA treatment also advanced the timing of the second phase of berry expansion as it appeared to eliminate the lag phase of berry growth. Taken together these data demonstrate that ABA is likely to play some part in the control of berry ripening and can be used to advance the timing of ripening. Further investigation into the characteristics of ABA-treated fruit will be needed to investigate the compositional character of treated fruit and to gauge its suitability for winemaking. An ability to control the timing of ripening may provide considerable benefits to the wine industry in terms of wine style/quality and for winery scheduling. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1278807 / Thesis (Ph.D.) - The University of Adelaide, School of Agriculture, Food & Wine, 2007.

Hormones control plant development by coordinating changes in the expression of numerous genes at crucial times in a tissue and organ-specific manner. They have been implicated in controlling various aspects of grape berry development, in particular, the important process of ripening and are used in some crops to control growth and ripening. Abscisic acid (ABA), is associated in grapevine with the response to water stress but may also have a role in berry ripening. We have shown over three seasons that ABA levels in Cabernet Sauvignon berries increase dramatically at veraison, consistent with it being involved either as a trigger for ripening or as a response to the increase in sugars that occurs at this time. Net ABA accumulation doesn't occur until veraison, the decrease in ABA concentration in the first phase of berry development being due to berry expansion. The decrease in ABA that occurs later in development is likely to be due to a combination of catabolism and sequestration into the bound form. The genes crucial to ABA synthesis, 9-cis-epoxycarotenoid dioxygenase (NCED) and zeaxanthin epoxidase (ZEP), were expressed throughout berry development and no clear correlation was found between their levels and that of ABA. Laboratory studies have shown that isolated berries respond to the presence of sucrose through an increase in ABA biosynthesis pathway gene expression (NCED and ZEP). This resulted in de novo synthesis of ABA as inhibition of the carotenoid synthesis pathway by a phytoene desaturase inhibitor prevented ABA accumulation. Replicated field trials clearly showed that ABA treatments can be effective in significantly enhancing ripening when applied in at or near the end of the first period of berry expansion. Colour accumulation in the skins commenced earlier in ABA-treated fruit as did the increase in sugar levels. ABA treatment also advanced the timing of the second phase of berry expansion as it appeared to eliminate the lag phase of berry growth. Taken together these data demonstrate that ABA is likely to play some part in the control of berry ripening and can be used to advance the timing of ripening. Further investigation into the characteristics of ABA-treated fruit will be needed to investigate the compositional character of treated fruit and to gauge its suitability for winemaking. An ability to control the timing of ripening may provide considerable benefits to the wine industry in terms of wine style/quality and for winery scheduling. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1278807 / Thesis (Ph.D.) - The University of Adelaide, School of Agriculture, Food & Wine, 2007.

The length of the primary root and the density of lateral roots determine the architecture of the root. In this thesis the effect of NAA, ABA and the NO donor SNP alone as well as the combination of ABA or NAA with SNP on lateral root development was investigated. The interaction between CPTIO, a NO scavenger, and NAA or SNP is also reported. Following preliminary experiments in which it was observed that the aerial part of the seedling influenced LR growth and that there was a possible inhibitory effect of light on cultured root tips, experiments were conducted with excised roots tips in the dark. NAA was shown to have the potential to initiate LRs across a wide concentration gradient with the total number of LRs and initiated lateral root primordia (LRP) remaining constant across the range of concentrations tested. Over the last decade, nitric oxide (NO), a bioactive molecule, has been reported to be involved in the regulation of many biological pathways. The presence of NO in the system provided via sodium nitroprusside (SNP), promoted LRP initiation based on the NAA concentration gradient; but without changing the total LR initiation, that is LRs plus primordia density remained constant along the concentration gradient of NAA. The absence of LR and LRP in the treatments of CPTIO (a NO scavenger) with SNP or NAA suggests that NO regulates LRP initiation triggered by NAA, which is in agreement with the recent paper published after the commencement of this study (Correa-Aragunde et al., 2006). In agreement with previous studies, ABA inhibited lateral root development by reducing LR density and the number of LRs. The experiments with fluridone, an ABA biosynthesis inhibitor, may indicate that endogenous ABA was at sufficient concentrations in the excised root tips to inhibit primordia initiation. In this study, evidence is presented for the first time to show that SNP can relieve the inhibitory effect of ABA on LR density and number of LRs suggesting the NO, released from SNP, acts downstream of ABA. Overall these data confirm a critical role for NO in LR initiation.

Diss. (sammanfattning) Uppsala : Sveriges lantbruksuniversitet, 2004. / Härtill 4 uppsatser.

In this thesis the study of effects exogenous and engoenous factors on garlic (Allium sativum L.) plats in vitro was done. Species 'Lukan', 'Lan', 'Bjetin', 'Slavin' a 'Havran' were observed with their reactions to growth regulators added to MS medium with 0,5 mg.l-1 2iP, 0,2 mg.l-1 NAA - variants with PP 333, ABA, CEPA and increased sucrose content. During the growth of the plant, ethylene, ethane and CO2 concentrations in culturing bulbs were determined and plant growth was monitored, namely bulb creation and mass increase. At the end of the experiment, the stability of donor plant and explant was verified using DNA markers in 'Lan' and 'Lukan' species.