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The cytoskeleton is a remarkable system of filaments that helps in the organisation and functioning of living cells. In plant cells, this cytoskeleton comprises actin microfilaments and microtubules that polymerise from actin and tubulin respectively. While these proteins are highly conserved in eukaryotes, the plant cytoskeleton performs many plant-specific functions. The organisation and functions of the cytoskeleton are determined by a plethora of accessory proteins (actin-binding proteins, microtubule-associated proteins) that link the cytoskeletal filaments to other cell components and to each other. While there is extensive data for the subcellular localisation of actin-binding proteins with actin microfilaments in animal cells, surprisingly few experiments of this type have previously been tried in plants, and the subcellular localisation of most plant actin-binding proteins remains unknown. Such information is important in assessing functions of these proteins to give a better understanding of the actin cytoskeleton. In this study, an attempt was made to visualise the association of actin microfilaments and actin-binding proteins. A range of antibodies raised against various plant and animal actin-binding proteins were screened in two model systems for plant cytoskeleton research, the root of Arabidopsis thaliana and in whole cells of the tobacco BY2 liquid cell culture. Further, because previous data in the localisation of the actin-binding protein tropomyosin have suggested that the localisation of this actin-biding protein with the finer cortical actin microfilaments in Arabidopsis roots might not be discerned due to high cytoplasmic background, immunolabelling experiments were also conducted on plasma membrane ghosts generated from tobacco BY2 from which any non-specific cytoplasmic labelling could be washed away. There experiments gave some preliminary suggestions for the association of the actin-binding proteins to the actin cytoskeleton in plant cells. The most intriguing observations were obtained with antibodies against the β-subunit of capping protein which colocalised with larger microfilament bundles in tobacco BY2 cells. No colocalisation was observed on membrane ghosts on which these bundles are not well retained. However, the previous experiments in which there were suggestions of tropomyosin-related proteins associated with fine cortical microfilaments in Arabidopsis could not be replicated. As no cytoskeletal localisation was observed in either Arabidopsis or tobacco with antibodies raised against known actin-bundling proteins from Arabidopsis such as villin and fimbrin, it is speculated that the labelling protocols, currently optimised for visualising the actin cytoskeleton, might not to be modified to allow visualisation of actin-binding proteins in plant cells.

The cyclical interaction between the force-generating protein myosin and actin is the mechanism responsible for muscle contraction among all muscle types. Cardiac muscle contraction is tightly controlled to ensure that blood pumps effectively and efficiently from the heart to peripheral organs. Mutations in various cardiac proteins can lead to cardiac dysfunction and a number of cardiomyopathies. The first part of this dissertation studies two disease-linked mutations in the regulatory light chain of the cardiac myosin molecule, D166V and K104E, and assesses the kinetic and mechanochemical effects of the mutations via the in vitro motility assay. The data show that D166V mutant myosin force generation is reduced compared to wild type, and exogenous phosphorylation of the mutant light chain rescues force generation. In contrast, the K104E mutation showed no deficit in force production but exhibited increased calcium sensitivity of activation. These results are consistent with contractile defects associated with cardiomyopathies caused by various mutation-induced changes to protein function and mechanism of interaction. The second part uncovers the actin-binding mechanism of one of the chief muscle regulatory proteins tropomyosin. In cardiac and skeletal muscle, tropomyosin and troponin modulate muscle contraction. Tropomyosin binds along the length of actin filaments and blocks myosin-binding sites. Following an excitatory stimulus, calcium binds troponin and causes tropomyosin to shift its position on actin, allowing myosin to bind. The precise mechanism of how tropomyosin monomers with low actin affinity bind to form a stably bound, high affinity chain is unknown. By directly observing fluorescently labeled tropomyosin binding to actin filaments, it was shown that tropomyosin molecules bind randomly along the actin filament. Subsequent monomer binding, and formation of tropomyosin end-to-end bonds, increases the probability of sustained chain growth by decreasing the probability of detachment prior to additional monomer binding. Tropomyosin molecules added to the growing chain at approximately 100 monomers/(μM*s). Different tropomyosin isoforms segregate to distinct functional and structural regions of cells. The last chapter presents data that show spatial segregation of two different tropomyosin isoforms on actin filaments. This suggests that tropomyosin sorting in cells is, at least partly, an intrinsic property of the binding mechanism.

The brain is a highly complex structure; neurons extend axons which follow precise paths to make connections with their targets. This extension is guided by a specialised and highly motile structure at the axon tip -the growth cone- which integrates guidance cues to steer the axon through the environment. Aberrant pathfinding is likely to result in developmental impairments causing disruption to brain functions underlying emotion learning and memory. Furthermore, pre-existing connections are constantly remodelled, the ability to do so declines with age, and can have huge impacts on quality of life and well-being. Examining how changes in growth cone behaviour triggered by external cues occurs is crucial for understanding processes in both development and disease. Controlled reorganisation of growth cone cytoskeletal components, such as actin filaments, generate membrane protrusions forming lamellipodia and filopodia. Filopodium formation is commonly associated with sensing the mechanical and chemical environment of the cell. Despite our understanding of the guidance choices that can be made, how filopodia transmit information at a molecular level leading to profound changes in morphology, motility and directionality remains largely unknown. Various actin-binding proteins regulate the number, stability and branching of filopodia. They may therefore have a key role in priming or abrogating the ability of the growth cone to respond to a given guidance cue. I have shown that the actin binding proteins drebrin and cofilin, whilst displaying opposing molecular activities on actin filaments, work synergistically in a temporally regulated manner. A fluorescent membrane marker combined with tagged cofilin and drebrin enabled accurate correlation of cofilin and drebrin dynamics with growth cone morphology and filopodial turnover in live neurons. In contrast to previous in vitro experiments, cofilin was found to enhance the effect of drebrin to promote filopodia formation in intact neurons, and that growth cone spread was significantly constrained when cofilin was knocked down. Importantly, this adds to our understanding of how the two actin binding proteins contribute to directed motility in neuronal growth cone filopodia during guidance. Furthermore, following acute treatment with low concentrations of the repulsive guidance cue semaphorin-3A, neuronal growth cones expressing cofilin displayed increased morphological complexity and filopodial stability. This suggests that traditional collapse signals may serve as pause signals allowing neurons to increase the surface area to sense the environment adequately and enable precise wiring decisions. Remodeling of the cytoskeleton is perturbed in a number of degenerative diseases including Alzheimer's, Huntington's, and Amyotrophic Lateral Sclerosis. These conditions are associated with widespread synaptic loss, resulting in memory loss, cognitive impairment, and movement disorders which leads to severe deterioration in quality of life for those afflicted in addition to wider negative socioeconomic impacts. How widespread synaptic loss occurs is poorly understood. One common characteristic is neuronal stress which can be initiated through different conditions such as neuroinflammation, energetic stress, glutamate excitotoxicity, and accumulation of misfolded proteins, all of which have been associated with perturbation of the actin cytoskeleton and the initiation of the cofilin-actin rod stress response. Dysfunction of the cytoskeleton can lead to the disruption of synaptic activity by blocking the delivery of elements such as organelles and proteins required for maintenance of the synapse. Modulating this stress response offers an approach to protecting the integrity of normal synaptic function. Actin interacting protein-1 is a conserved actin binding protein that enhances the filament disassembly activity of cofilin. I have discovered that AIP-1 has a potent ability to prevent the formation of cofilin rods which are thought to contribute to the neuronal dysfunction in several neurodegenerative disorders, even when they are treated with amyloid-β or subjected to metabolic stress. This is the first study to demonstrate a molecular mechanism for preventing rod formation in the presence of a neuronal stressor and has the potential to protect against rod formation by other stressors associated with disease such as inflammation and excitotoxicity. AIP-1 offers the exciting possibility of a means to reverse cofilin rod formation and the subsequent cytoskeletal pathology associated with dementia and has potential for therapeutic exploitation in human disease. Furthermore, it is the first study to demonstrate that AIP-1 localises to areas of rapid actin remodeling in neuronal growth cones. Exploiting the action of AIP-1 therefore represents an exciting and novel therapeutic avenue to tackle neurodegeneration.

Les épines dendritiques sont de petites protrusions post-synaptiques présentant des changements morphologiques corrélés avec la plasticité synaptique. Elles ont pour origine les filopodes dendritiques qui s’élargissent lors du contact avec l’axone. Ces changements morphologiques impliquent une grande variété de molécules dont des protéines associées à l’actine et des protéines d’adhésion. Cependant, comment ces différentes protéines sont coordonnées dans le temps et l’espace est encore largement méconnu. De plus, les techniques de microscopie conventionnelle ne permettent pas d’étudier l’organisation et la dynamique de ces protéines dans les épines dont la taille est proche de la limite de resolution. L’objectif de ma thèse a donc été d’explorer le rôle des protéines associées à l’actine ainsi que celui des protéines d’adhésion N-cadhérines dans l’organisation et la dynamique du cytosquelette d’actine des épines dendritiques. Dans une première étude, nous avons suivi la motilité des filopodes et épines dendritiques de neurones en visualisant l’actine-GFP. Nous avons couplé cette approche avec : 1) une technique de piégeage optique de microsphères recouvertes de N-cadhérines ou des substrats micro-imprimés également recouverts de N-cadhérines afin de contrôler temporellement et spatialement les adhésions cadhérine-cadhérine, 2) la stimulation pharmacologique de la myosine II afin d’induire la contraction F-actine/myosine et 3) l’expression de mutants de N-cadhérine non adhésifs. Nous avons ainsi démontré que la stabilisation des filopodes en épines était dépendante de l’engagement d’un embrayage moléculaire entre les adhésions trans-synaptiques N-cadhérine et le flux rétrograde d’actine généré par les myosines II. Dans une deuxième étude, nous avons utilisé la microscopie super-résolutive (PALM et dSTORM) et le suivi de protéines individuelles (sptPALM) pour étudier l’organisation et la dynamique à l’échelle nanométrique des protéines à l’origine des réseaux d’actine branchés dans les épines. Ainsi, nous avons caractérisé la localisation et la dynamique de l’actine, du complexe Arp2/3, du complexe WAVE, d’IRSp53, de VASP et de Rac-1. Nous avons montré que, contrairement aux structures motiles classiques comme lamellipode, le réseau d’actine branché dans les épines n’ést pas formé aux extrémités protrusives puis incorporé dans un flux rétrograde d’actine. Ce réseau est initié à la PSD puis croît vers l’extérieur afin de générer les protrusions membranaires responsablent des changements morphologiques de l’épine. Nos résultats montrent également qu’un contrôle strict de l’activité de Rac-1 est nécessaire au maintien de la morphologie des épines dendritiques et de l’architecture du réseau d’actine branché. L’ensemble de mon travail souligne l’importance du rôle de l’organisation à l’échelle nanométrique du réseau d’actine branché et des adhésions N-cadhérine dans la dynamique et la formation des épines dendritiques. Ces résultats pourraient avoir un rôle important dans la compréhension des changements morphologiques lors de la plasticité synaptique. / Dendritic spines are tiny post-synaptic protrusions exhibiting changes in morphology correlated with synaptic plasticity. They originate from motile dendritic filopodia, which enlarge after contacting axons. These morphological changes involve a wide number of molecular actors, including actin-binding proteins, and adhesion molecules. However, how these various molecular components are coordinated temporally and spatially to tune changes in spine shape remains unclear. Furthermore, conventional photonic microscopy techniques could not achieved the spatial resolution required to study the dynamic nanoscale organization of these proteins within the micron size dendritic spines. The objective of my Ph.D. was to unravel how actin-binding proteins and N-cadherin adhesion regulate the organization and dynamics of F-actin network in dendritic spines. In a first study, we measured the motility of dendritic filopodia and spines by time lapse imaging of actin-GFP in primary hippocampal neurons. We combined those measurements with: 1) manipulation of N-cadherin coated beads with optical tweezers, or micropatterns to control the timing and location of nascent N-cadherin adhesions, 2) pharmacological stimulation of myosin II to trigger contraction of the F-actin/myosin network and 3) expression of non-adhesive N-cadherin mutants to compete for the interaction between N-cadherin adhesion and F-actin. Using these different approaches we demonstrated that the stabilization of dendritic filopodia into mature spines was dependent on the engagement of a molecular clutch between trans-synaptic N-cadherin adhesions and the myosin driven F-actin flow. In a second study, we used super resolution microscopy (PALM and dSTORM) and single protein tracking (sptPALM) to study the dynamic nanoscale organizations of branched actin networks within dendritic spines. Using these technics, we characterized within dendritic spines, the localization and dynamics of actin, Arp2/3 complex, WAVE complex, IRSp53, VASP and Rac-1. We established that, opposite to classical motile structures such as the lamellipodium, branched F-actin networks in dendritic spines are not formed at the tip of membrane protrusions and incorporated in a retrograde flow. On the contrary, they are growing outwards from the PSD generating membrane protrusions responsible for spine motility. We also show that a thigh control of Rac1 activity is required to maintain dendritic spine morphology and branched actin network organization. Altogether, these studies point out the role of the nanoscale functional organization of F-actin networks and its linkage to adhesion proteins in the regulation of dendritic spine formation and dynamics. These findings may have important implications in the understanding of spine morphology changes driven by synaptic activity.

Editorial on the Research Topic. Editorial: Editor’s Pick 2021: Highlights in Cell Adhesion and Migration.

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Neospora caninum é um parasita intracelular obrigatório pertencente ao filo Apicomplexa, conhecido por ser uma das principais causas de aborto parasitário em bovinos e por apresentar transmissão transplacentária. Para locomoverem-se e acessarem o conteúdo intracelular de células hospedeiras, organismos apicomplexas fazem uso de um mecanismo não convencional que se utiliza de uma maquinaria celular cujo papel central é exercido pelo motor actina-miosina, auxiliado por proteínas intermediárias e de acoragem, que realiza a propulsão do parasita na direção do movimento. Para o funcionamento dessa maquinaria, é essencial que actina esteja em sua forma filamentosa (actina-F). Porém, actinas de apicomplexas são conhecidas por serem funcional e estruturalmente não convencionais, formando filamentos pequenos e instáveis in vitro, assim como pelo predomínio de grande maioria de actina monomérica (actin-G) nas células in vivo. Desse modo, para formar e manter actina-F a dinâmica de actina desses organismos requer uma regulação precisa, que, em apicomplexas, é conduzida por um arsenal conhecidamente pequeno de proteínas que se ligam a actina (ABPs). Nosso objetivo neste estudo foi identificar e caracterizar ABPs de N. caninum. Para isso, duas ABPs de N. caninum foram estudadas: fator de despolimerização de actina (NcADF) e proteína associada a ciclase (NcCAP); também, foi gerado e caracterizado soro contra região de actina de N. caninum entre aminoácidos 201 e 310 (anti-NcAct201-310). NcADF (correspondente ao acesso NCLIV_012510 em ToxoDB) foi submetida a caracterização molecular e bioquímica. A sua estrutura terciária foi gerada por modelagem molecular baseada em homologia, apresentando folding conservado, porém com F-loop de menor tamanho, quando comparada a ADF/cofilinas canônicas. A forma recombinante de NcADF foi expressa E. coli BL21 por plasmídeos pET32a(+) e pET28a(+) e solubilizada em tampão desnaturante e nativo, respectivamente. NcADF_pET32 foi purificada e utilizada para geração de soro anti-NcADF, que detectou ambas NcADF recombinantes, assim como proteínas endógenas em western blot 1-D e 2-D com peso molecular e pI próximos aos preditos. O soro anti-NcADF também localizou NcADF difusa no citoplasma, com menos intensidade nos polos de taquizoítas de N. caninum extracelulares. NcADF_pET28 foi purificado na forma nativa e utilizado para caracterização funcional para avaliação de seu papel na dinâmica de actina liofilizada de coelho. Ensaios de cossedimentação, cinética de polimerização e despolimerização, viscosimentria de baixo cisalhamento (queda de bola), estado estacionário e ligação entre actina-G e NcADF, em conjunto, mostraram que NcADF causa despolimerização de actina-F, realiza sequestro de monômeros de actina e quebra de filamentos. NcCAP foi submetida a caracterização molecular e foi identificada como produto de expressão do gene de acesso NCLIV_054140. NcCAP recombinante foi expressa em pET32a(+) e pET28a(+) predominantemente em corpos de inclusão e foi solubilizada em tampão desnaturante. A forma purificada de pET32_NcCAP, identificada por espectrometria de massas, foi utilizada para imunização e o soro resultante detectou NcCAP recombinante e endógena por western blot 1-D e 2-D, apresentando bandas e spots de peso molecular e pI próximos ao esperado. O soro anti-NcCAP também localizou NcCAP em taquizoítas ii extracelulares de N. caninum difusa no citoplasma e/ou com predomínio na região periplasmática da célula. Por fim, o soro anti-NcAct201-310 foi gerado, sendo capaz de detectar proteínas em sua forma nativa e realizar marcação na região periférica e, possivelmente, nuclear de taquizoítas de N. caninum extracelulares. A caracterização de ABPs de N. caninum feita neste trabalho amplia o conhecimento sobre a conservação dessas proteínas ao longo do filo Apicomplexa. Ademais, representa uma contribuição para o entendimento da dinâmica de actina e, por consequência, futuramente, pode colaborar para a elucidação de mecanismos-chave para a sobrevivência e disseminação dos parasitas pelo seu hospedeiro / Neospora caninum is an obligate intracellular parasite that belongs to the phylum Apicomplexa. It is known as one of the main causes of infectious abortion in cows and for its efficient transplacentary transmission. Apicomplexan organisms use a phylum-specific mechanism of invasion and gliding motility, which use an unusual cellular machinery based on an actin myosin motor assisted by intermediary and anchoring proteins that creates the traction force to impulse the parasite forward. Filamentous actin (F-actin) is essential to the appropriate functioning of this machinery, although apicomplexan unconventional actin forms small and unstable filaments in vitro and is found preponderantly as monomer (G-actin) in cells. Thus, the parasites need actin-binding proteins (ABPs) to strictly regulate actin dynamics and to form and maintain F-actin when it is necessary to the cell. Here, we aimed at identifying and characterising ABPs from N. caninum. Two ABPs were characterised: actin-depolymerising factor (NcADF) and cyclase-associated protein (NcCAP) from N. caninum. In addition, a serum against the actin region between amino acids 201 and 310 (anti-NcAct201-310) was raised. NcADF, which corresponds to identification NCLIV_012510 on ToxoDB, was molecular and biochemically characterised. Firstly, the tertiary structure of NcADF was generated by molecular modelling based on homology. Comparing to canonical ADF/cofilins, NcADF presented a conserved folding, albeit its smaller F-loop. The recombinant form of NcADF was expressed in E. coli BL21 using pET32a(+) and pET28a(+) plasmids and solubilized in denaturing and native buffers, respectively. Polyclonal antibodies were raised in mice against purified NcADF_pET32, which was able to detect both forms of recombinant NcADF as well as proteins in 1-D and 2-D western blot with expected molecular weight and isoelectric point (pI). Additionally, NcADF was localised in extracellular N. caninum tachyzoites as a diffuse pattern on cytoplasm with less intensity in both poles. NcADF_pET28 was successfully purified in native form and used for functional characterisation to evaluate the role of recombinant NcADF on lyophilised rabbit actin dynamics. Together, co-sedimentation, polymerisation and depolymerisation kinetic, low shearing viscometry (falling ball), steady state, and G-actin and NcADF binding assays showed that NcADF was able to depolymerise actin-F, sequester actin monomers, and sever filaments. Moreover, NcCAP (identification NCLIV_054140) was also characterised. Recombinant NcCAP was expressed in pET32a(+) and pET28a(+) plasmids predominantly in inclusion bodies and was solubilised in denaturing buffer. NcCAP_pET32 was purified and identified by mass spectrometry. Then, the polyclonal antibodies against this recombinant protein was generated in mice. It was able to detect recombinant and endogenous NcCAP, presenting bands and spots in 1-D and 2-D western blot with molecular weight and pI quite near to the predicted ones. NcCAP was localised as a diffuse pattern on cytoplasm and/or predominantly on periplasmic regions of extracellular taclyzoites of N. caninum. Finally, the serum containing anti-NcAct201-310 polyclonal antibodies was raised in mice. It detected endogenous proteins mainly in native form and localised them on periplasmic and possibly nuclear region in extracellular N. caninum tachyzoites. The characterisation of N. caninum ABPs iv extends our understanding of these proteins conservation and their function throughout the Apicomplexa phylum. Furthrmore, it represents a contribution to the field towards the comprehention of actin dynamics and in the future might provide information for important mechanisms of dissemination and survival of the parasite at its host

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