Global ETD Search

51	Estimating the distribution of demand for Antarctic krill (Euphauisa superba) from land-based predators at South Georgia Swarbrick, Matthew Lewis January 2007 (has links) South Georgia is renowned for the abundance of Antarctic krill (Euphausia superba) and a range of krill predators. Variability in krill availability at a range of scales, and the consequences of this for predator-prey interactions, mean that quantifying the spatially explicit demand for krill by those predators is essential to understanding the mechanisms underlying ecosystem changes in the region. In this thesis demand within a distinct study box to the northwest of the island has been assessed. The thesis has three sections; (1) the number of predators; (2) the distribution of predators; and (3) the demand for krill by those predators. (1) Predator densities with confidence intervals were determined from appropriately designed shipboard transect survey; counts of Antarctic fur seals (Arctocephalus gazella), macaroni penguins (Eudyptes chrysolophus), gentoo penguins (Pygoscelis papua), and Antarctic prions (Pachyptila desolata) were adjusted for sea state, distance from observer and dive behaviour. Providing the first at-sea predator density estimates for the region. (2) A comparison of the distribution of female Antarctic fur seals engaged in pup-rearing (using satellite telemetry) and the whole population that were not restricted to a single part of the population (from shipboard transect survey) was undertaken. Using two general additive models based on the relationship between seal distribution (one derived from transect and the other from telemetry) and the physical environment indicated that the spatial distribution of lactating females is representative of the general population. (3) Using the derived predator density, the local krill demand estimate was 2581 tonnes krill per day, a consumption rate of 0.45% per day of the concurrently estimated krill biomass (using shipboard acoustics). Antarctic fur seals accounted for 75% of this demand. This level of demand was less than the increase in biomass resulting from krill growth. However, based on the length-specific demand, determined from concurrent predator diet samples demand exceeded growth for krill >48mm.
52	Detecting structural variants in the DNA of the inbred Scandinavian wolf Huson, Lars January 2023 (has links) Only 40 years ago, just three individuals made the journey from Finland/Russia to found the current wolf population in the southwest of Sweden. This population, that to this date descends from less than 10 founders, has a substantial increased extinction risk due to inbreeding. Several previous studies have used SNPs to monitor the level of inbreeding and homozygosity in the population, as well as measure immigration and the inflow of new genetic material. This study uses both short- and long-read data to discover structural variants (SVs) and small indels in the population, so that they may be used to extend the analyses and provide more insight into the current state of the Scandinavian wolf population. After the calling of the SVs, strict filtering and manual curation were applied to the data, thereby removing many false positive calls and increasing confidence in the remaining SVs. Short-read and long-read SV-callers found 31,800 and 57,821 SVs respectively, with relatively little overlap between the two sets. By far, the most common SV-types were deletions and insertions, at about 30,000 each with varying length ranging from a 50 base pairs to several tens of Mbp. Analyses on the data, such as PCAs and parent-offspring trio analyses, reveal high-confidence calls and consistent results between SV-types and SV-callers, as well as a low estimated genotyping error rate. PCAs performed on the SVs resembled those performed on SNPs, which strengthens the credibility of the identified variants. Finally, this study suggests several alternative steps for possible improvement to the dataset, along with some proposals for subsequent research topics that may use the variants discovered in this study. animal animal population bioinformatics biological sciences biology Canis lupus CNV conservation genetics conservation genomics copy-number variation DNA endangered population endangered species evolution evolutionary biology extinction genetic diversity genetics genetic variation genomes genomics grey wolf inbreeding inbreeding depression indel mutation pedigree population genetics population genomics Scandinavia smoove snakemake structural variant SV wolf wolves Bioinformatics and Systems Biology Bioinformatik och systembiologi Genetics Genetik Evolutionary Biology Evolutionsbiologi

Search results

Estimating the distribution of demand for Antarctic krill (Euphauisa superba) from land-based predators at South Georgia

Detecting structural variants in the DNA of the inbred Scandinavian wolf