Dramatic declines in many species of demersal fishes off the West Coast have resulted in the designation of nine commercially important species as being overfished. While the causes of those declines are not clearly understood, the fact remains that a paucity of life history and abundance data exists for many demersal species, also known as groundfish. Due to this uncertainty, only 21 of the 82 species of groundfish managed under the Groundfish Fishery Management Plan of the Pacific Fishery Management Council (PFMC) have been fully assessed. One challenge in designing a systematic survey of groundfish resources is that many species associate with heterogeneous substrate of varying relief. In many areas, the rugosity of the substrata precludes sampling by conventional techniques (e.g. bottom trawl gear). This has stimulated research that characterizes fish-habitat associations for use in design of new survey methodology. Using a combination of remote sensing, in situ observations, and spatial analytical techniques, four benthic habitat classes were mapped for a large rocky bank off the central Oregon coast known as Heceta Bank. Observational data from human-occupied submersible and remotely operated vehicle dives in the late 1980s, 2000 and 2001 were used to establish habitat classes with specific substrate characteristics that have been statistically shown to correlate with demersal fish distributions. The observational habitat data was then extrapolated over the extent of a multibeam sonar survey conducted in 1998 using quantitative parameters derived from high-resolution bathymetric and backscatter imagery of the seafloor. The resultant map predicts the locations of four habitat classes: Ridge-Gully, High-Relief Rock (boulders, cobbles), Unconsolidated Sediment 1 (muds), and Unconsolidated Sediment 2 (sands). The main utility of the habitat map developed as part of the current study is that it provides a context for analyses of a variety of spatial data. For instance, habitat data provides one additional spatial component besides depth and latitude that can be used to stratify catch per unit effort data from surveys and commercial logbooks. Also, essential fish habitat for many demersal species can now be identified in more detail. Finally, habitat data like those presented here can aid in the design of marine reserves and protected areas by providing a context for spatial analyses of data of ecological importance. / Graduation date: 2003

The object of this research, conducted between December 8, 1970, and August 27, 1971, was to assess the effect of pollution on benthic macroinvertebrates in Halfway Creek and the Mississinewa River at Albany, Indiana.Data related to macroinvertebrate composition, population density and distribution were obtained through the utilization of Surber and Coleman Pot Samplers. Physical and chemical characteristics were determined using Standard Methods to provide background data for the biological conditions encountered.Data from diversity and standard deviation indices were analyzed separately, and then combined to produce three pollution categories indicating degree of water quality degradation. The diversity index evaluated organically enriched situations but was inadequate in evaluating toxic chemical situations. The standard deviation index indicated toxic conditions, but failed to interpret population dominance satisfactorily.The indices and pollution category data indicated substandard water quality in Halfway Creek. At the confluence of the two streams limiting and selective effects of pollution produced subtle population changes of macroinvertebrates that were measurable by indices and pollution category data. Supportive data from seasonal life histories, decrease of organisms known to be sensitive to toxic and organic wastes, and chemical data indicated a decrease in quality of the Mississinewa River near the mouth of Halfway Creek as compared to its upstream condition.Ball State UniversityMuncie, IN 47306

The limnological knowledge of waters in arid regions, especially Mongolia, is still insufficient. It was the goal of the Mongolian-German research project “Limnological Particularities of Characteristic Waterbodies in the Uvs Nuur Basin” to develop a systematic inventory of waters, describe their morphological, hydrophysical, chemical and biological characteristics and to generalize the framework of abiotic and biotic factors that determine their character. During the field work, carried out from 1996 to 1999, samples of water, sediments, benthic and planktonic biota were taken from 76 places at 15 stagnant water bodies, 21 streams and several groundwater bodies; morphological, hydrological, physical and hydrochemical measurements were made. Chemical and biological analyses were carried out in Germany. The most important taxonomical groups were determined by German and international specialists. The results of the work are presented and discussed separately for running waters, lakes and groundwater. Based on these findings, several general topics are dealt with: factors shaping the character of water bodies, food webs, biogeography, spatial sequence of water bodies, typology and protection issues. A checklist of 596 taxa was compiled; 109 additional taxa from the Russian and Mongolian literature were included. Two species (Cyclops glacialis Flößner 2001 and Acanthocorbis mongolica Paul 2011) were new for the science and 103 species were new reports for Mongolia. A regional stream typology with 11 different types was developed using the criteria ecoregion, altitude and catchment area. The typology developed for stagnant waters comprises 9 types based on altitude, lake area, existence of an outflow and relative depth. This dissertation comprises 139 pages and an appendix of 59 pages, 50 tables, 94 figures and a map.

Thesis (M.S.)--University of North Carolina at Wilmington, 2005. / Includes bibliographical references (leaves: 40-41)

The limnological knowledge of waters in arid regions, especially Mongolia, is still insufficient. It was the goal of the Mongolian-German research project “Limnological Particularities of Characteristic Waterbodies in the Uvs Nuur Basin” to develop a systematic inventory of waters, describe their morphological, hydrophysical, chemical and biological characteristics and to generalize the framework of abiotic and biotic factors that determine their character. During the field work, carried out from 1996 to 1999, samples of water, sediments, benthic and planktonic biota were taken from 76 places at 15 stagnant water bodies, 21 streams and several groundwater bodies; morphological, hydrological, physical and hydrochemical measurements were made. Chemical and biological analyses were carried out in Germany. The most important taxonomical groups were determined by German and international specialists. The results of the work are presented and discussed separately for running waters, lakes and groundwater. Based on these findings, several general topics are dealt with: factors shaping the character of water bodies, food webs, biogeography, spatial sequence of water bodies, typology and protection issues. A checklist of 596 taxa was compiled; 109 additional taxa from the Russian and Mongolian literature were included. Two species (Cyclops glacialis Flößner 2001 and Acanthocorbis mongolica Paul 2011) were new for the science and 103 species were new reports for Mongolia. A regional stream typology with 11 different types was developed using the criteria ecoregion, altitude and catchment area. The typology developed for stagnant waters comprises 9 types based on altitude, lake area, existence of an outflow and relative depth. This dissertation comprises 139 pages and an appendix of 59 pages, 50 tables, 94 figures and a map.:Acknowledgments ii Abstract iii List of Tables iii List of Figures vi 1 Introduction 1 1.1 Significance of the investigations 1 1.2 Aims of the investigations 2 1.3 Sequence of field research activities 3 1.4 Area of investigation 4 1.4.1 Topographic situation and morphology .4 1.4.2 Climate 5 1.4.3 Geology and soils 9 1.4.4 Vegetation 10 1.4.5 Population and economy 10 1.4.6 Former limnological investigations in the Uvs Nuur Basin 11 1.4.7 Short description of the investigated waters 12 2 Methods 15 2.1 Sampling 15 2.2 Field measurements 16 2.3 Laboratory analyses and data evaluation 19 3 Results and discussion 26 3.1 Rivers 26 3.1.1 Morphology and hydrology 26 3.1.2 Runoff dynamics 34 3.1.3 Water temperature and freezing 38 3.1.4 Chemical properties 39 3.1.5 Aquatic biota 43 3.2 Lakes 53 3.2.1 Formation and morphometry 53 3.2.2 Water level changes and water balance 58 3.2.3 Temperature and overturn dynamics of the water body 63 3.2.4 Vertical gradients of physico-chemical parameters and chlorophyll 65 3.2.5 Horizontal gradients in Uvs Nuur: surface temperature and suspended matter 69 3.2.6 Salinity and ionic composition 71 3.2.7 Nutrients and trophic state 74 3.2.8 Sediments 79 3.2.9 Aquatic biota 83 3.3 Groundwater 95 3.3.1 Hydrology 95 3.3.2 Chemical composition 96 3.3.3 Biota 98 4 Conclusions and synthesis 99 4.1 Exogenous factors influencing the character of water bodies 99 4.1.1 Biological structure of running waters 100 4.1.2 Biological structure of lakes 104 4.2 Food webs 105 4.3 Biogeographical classification 110 4.4 Spatial sequence of water bodies and material flows 113 4.5 Transformation of the water bodies 116 4.6 Typology of water bodies 117 4.7 Protection of landscape and waters 121 5 Literature 124 6 Appendices 140 6.1 Tables 140 6.2 Cross sections and longitudinal profiles of rivers 169 6.3 Microscopical images of algal species 175 6.4 Satellite images 179 6.5 Photographs of sampled waters 182

Large woody debris (LWD) was added to North Fork Stony Creek and North Prong Barbours Creek as an experimental stream enhancement technique. The purpose of this study was to determine the stream channel responses to LWD additions at the scale of the stream reach and around individual logs, to determine benthic macroinvertebrate relations to physical habitat, and to determine the potential effects of LWD created stream channel alterations on benthic macroinvertebrates. Pool frequency and total surface area increased substantially at the expense of riffles in the random and controlled placement sections one year after LWD additions in Stony Creek. Although logs oriented as ramps produced more channel scouring, only log dams created pools. Results in Barbours Creek were similar but less pronounced. Substratum detritus was greater in pools than riffles for both streams, but there was no difference between years, sections, or as a result of LWD additions. Most functional feeding groups and invertebrate orders were significantly more abundant in riffles than pools. The exception were collector gatherers which accounted for a large proportion of the benthic macroinvertebrate assemblage. Increased poor area at the expense of riffle area may decrease the overall relative abundances of functional feeding groups and result in a reduction of the stream's substratum detritus processing capabilities. Decreased riffle area should result in an overall decrease in the abundance of potential food items for brook trout in Barbours Creek, but not in Stony Creek. However, average biomass was not significantly different between pools and riffles for either stream. Biomass may therefore compensate for a loss of prey items for brook trout because, although numbers may decrease, average individual weight increases with an increase in pool habitats. / Master of Science

Benthic foraminifera inhabiting the mudflats of the Eden Estuary, NE Scotland, exhibited a single annual peak in abundance at both high (270 individuals 10 cm⁻²) and low shore (210 individuals 10 cm⁻²) intertidal sampling stations during June 2000. The increased total abundance coincided with reproduction in the two dominant foraminiferal species Elphidium williamsoni (May) and Haynesina germanica (June) at both sites. Benthic diatom biomass, measured as chlorophyll c, peaked at the high intertidal site during March and April 2001 (36 and 37 mg m cm⁻², respectively) and at the low intertidal site in June2000 (45 mg m cm⁻²). The high intertidal foraminiferal populations appeared to display a lagged response to increases in chlorophyll c. Multivariate statistics suggest that abiotic factors control the abundance of foraminifera at the high intertidal site. At the low intertidal site, total foraminiferal abundance demonstrated an almost immediate response to increased chlorophyll c and multivariate statistics suggested biotic factors are more important in controlling foraminiferal species abundance here. Ingestion rates of ¹³C-Iabelled benthic diatoms over a five-day experimental period were high (e.g. enrichment values for Elphidium were recorded as 687 ± 121 % after 1 day) in intertidal benthic foraminifera. Laboratory observations of E. williamsoni demonstrated rapid asexual reproduction (within 3 days) and growth rates of up to 14 µm day⁻¹ were estimated. Three benthic foraminiferal species E. williamsoni, H germanica and E. oceanensis ingest motile benthic diatoms as a food resource on the intertidal mudflats of the Eden Estuary. Novel application of natural abundance stable isotope (δ¹³C and δ¹⁵N) techniques demonstrated the trophic position of intertidal benthic foraminifera, confirming that they largely ingest and assimilate organic matter derived from benthic diatoms. Foraminifera have largely been overlooked in meiofaunal studies, but play a significant role in the rapid transfer of autotrophic carbon to higher trophic levels within benthic marine food webs.

A wealth of empirical and theoretical studies has investigated the consequences of biodiversity loss on ecosystem properties. Whilst the importance of biodiversity in mediating ecosystem properties has been established, the magnitude and direction of effects vary between studies and are dependent on the biotic and abiotic conditions of the experimental system. Consequently there are still significant gaps in our understanding of how species loss may affect ecosystem properties, what the underlying mechanisms are, and how the effects of species loss are modified by environmental context.

Previous pulse-chase experiments have revealed a wide diversity of benthic response patterns to organic matter (OM) input depending on environmental setting, benthic community structure and experimental conditions i.e. quantity and quality of the added OM.  However, the mechanisms and interaction of environmental and biological factors that produce an observed response pattern are poorly understood. The present thesis set out to improve our current understanding on the set of parameters that determine benthic response patterns.  The core of this study was based on two pulse-chase experiments in two bathyal settings: the Faroe-Shetland Channel (FSC) and the SW Cretan slope in the E. Mediterranean (E. Med).  The sub-zero temperatures in the FSC enabled the observation of the benthic response in “slow-motion” and showed that the response is not static but instead might go through various “phases”.  In the warm E. Med, C processing rates were considerably lower compared to previous measurements in adjacent regions.  The discrepancy was attributed to the particularly refractory sedimentary OM at the sampling station with apparent consequences for the physiological state of the bacterial community.  Both experiments showed that bacterial metabolism and its regulation is a key factor determining the reaction of the benthic community to OM inputs.  This thesis provided further understanding on the short-term fate of organic C in deep-sea sediments but also raised certain issues that could be addressed in future studies.

Quantification of stream macrobenthos populations has remained a perplexing problem in rivbrine ecology, despite numerous attempts at improvement. This is in part due to well documented variations in chemical and physical parameters locally and geographically, and resultant adapted macrobenthos populations. Southwood (1968) and Hynes (1970a) have reviewed the various sampling techniques developed'for the census of lotic macrobenthos populations. Needham and Usinger (1956), Chutter (1969), and others have pointed out the difficulty in obtaining adequate numbers of samples which will yield population estimates with desired statistical confidence, and still maintain some degree of sampling economy. Needham and Usinger (1956) and Gaufin et al. (1956) mentioned the "patchy" distribution of aquatic insect populations as the primary source of this difficulty. The concept of patchy distribution in insect populations was originally discussed by Andrewartha (1961). Attempts to improve confidence through improved sampling devices and techniques have led to development of numerous types of samplers. Cummins (1962) indicated that there were almost as many samplers as there were researchers.