Abstract ACCURATE METHODOLOGY FOR MONITORING BIOMEMBRANE EVENTS By Christine A. Winschel, Ph.D. A Dissertation submitted in partial fulfillment of the requirements for the degree of Doctorate of Philosophy in Chemistry at Virginia Commonwealth University. Virginia Commonwealth University, 2012 Major Director: Dr. Vladimir A. Sidorov ASSOCIATE PROFESSOR, DEPARTMENT OF CHEMISTRY This study describes the synthesis and characterization of a new receptor (cyclen 1) capable of strong selective binding of pyrene-based anionic dyes under near-physiological conditions. This receptor comprises four naphthylthiourea groups tethered to a cyclen core via an ester linkage. The most important finding was the ability of cyclen 1 to bind efficiently to a pH-sensitive pyranine dye, a dye that is commonly used in various biomembrane assays. The high affinity of cyclen 1 to pyranine, its impermeability to the lipid bilayer membrane, fast kinetics of binding, and ability to quench pyranine’s fluorescence were used as a basis for a new membrane leakage assay. This membrane leakage assay is fully compatible with the commonly applied pH-stat transport assay, and therefore it allows for differentiation of ion transport and nonselective leakage mechanisms within a single set of experiments. In the second part of this study a new methodology for the detection of lipid flip was developed. This methodology relies on the quenching of the fluorescence of a newly synthesized cascade-blue-labeled lipid through complex formation with cyclen 1. This receptor-dye complexation also has high affinity for binding at micromolar concentrations and can be reversed by either competitive displacement of the lipid probe or by enzymatic degradation of the receptor leading to the label release and fluorescence dequenching. This new methodology is suitable for the study of lipid flip in both model spherical bilayer membranes and in-vitro experiments, and is less invasive to the model and cell membranes than the commonly utilized 7-nitro-1,2,3-benzoxadiazol-4-yl (NBD)-dithionite methodology. Lastly, new pH-sensitive lipids were synthesized and utilized in the formulation of liposomes suitable for controlled drug release. These liposomes contain various amounts of internal NaCl and undergo internal acidification upon the exogenous addition of an HCl co-transporter in a physiologically relevant NaCl solution. Therefore, acidification ultimately leads to the hydrolysis of the pH-sensitive lipids and subsequent contents release. These liposomes were found to be insensitive to physiological concentrations of human serum albumin and to be non-toxic to cells at concentrations exceeding pharmacological relevance. These results render this new drug release model potentially suitable for in vivo applications.

Les stérosomes, des vésicules artificielles composées d’amphiphiles monoalkylés et d’un grand pourcentage de stérols, sont prometteurs dans plusieurs domaines comme les industries pharmaceutiques et alimentaires. Il existe des stérosomes chargés négativement, positivement et neutres. Dans ce mémoire, nous avons approfondi nos connaissances sur les propriétés physico-chimiques des stérosomes chargés : acide palmitique (PA)/stérol et stéarylamine (SA)/cholestérol (Chol). Premièrement, afin de mesurer la diffusion latérale de PA dans les membranes PA/stérol (30/70 mol/mol) par RMN à gradients pulsés, nous avons tenté de former des bicouches liquide-ordonnées (lo) orientées magnétiquement avec ce mélange. En s'inspirant de l’idée que l’ajout de 1,2-dihexanoyl-sn-glycéro-3-phosphocholine (DHPC), un lipide à courtes chaînes, dans le système 1,2-dimyristoyl-sn-glycéro-3-phosphocholine (DMPC) mène à la formation de bicouches orientées, nous avons étudié la formulation PA perdeutéré/acide hexanoïque (HA)/Chol avec une proportion molaire de 25/18/57 à plusieurs températures; aucune formation de bicouches orientées n’a été observée. Ce résultat pourrait être expliqué par la solubilisation partielle de HA en milieu aqueux. Alors, une quantité insuffisante serait insérée dans la bicouche pour induire son orientation. La formulation PA perdeutéré/DHPC/Chol n’a pas conduit, elle non plus, à des bicouches orientées magnétiquement à des températures et concentrations lipidiques variées. En étudiant le mélange DMPC/DHPC/Chol (67/17/14), nous avons remarqué que la présence de Chol inhibait l'orientation magnétique des bicouches. Tandis que le mélange DMPC/DHPC/stigmastérol (SS) avec les proportions molaires 67/19/14 et 72/21/7 conduisait à des bicouches orientées avec leur normale (n) perpendiculaire au champ magnétique à 40 °C et 50 °C. Ces résultats suggèrent que le mélange PA/SS avec une proportion de lipide à courtes chaînes, HA et DHPC, pourrait mener à des bicouches orientées magnétiquement. Le mélange PA/Chol avec un lipide à courtes chaînes pourrait aussi être étudié en présence des lanthanides. Deuxièmement, nous avons examiné la possibilité de moduler la libération de matériel encapsulé dans des liposomes essentiellement composés de PA et d’un stérol. Il est connu que le mélange PA/Chol (30/70) à pH ≥ 7,5 forme des liposomes très peu perméables. Il est avantageux de pouvoir moduler la perméabilité pour avoir un contrôle sur le temps de libération de leur contenu, qui est un paramètre de grande importance pour les formulations liposomales de médicaments. D’abord, il a été montré que l’acide oléique (OA)/Chol (30/70) est capable de former des vésicules, ce qui n’avait jamais été prouvé auparavant. Par contre, les bicouches OA/Chol (30/70) ne sont pas plus perméables que les bicouches PA/Chol (30/70). L’ajout de 1-palmitoyl-2-oléoyl-sn-glycéro-3-phosphatidylcholine (POPC) dans le mélange PA/Chol n’augmente pas plus la perméabilité. En effet, les cinétiques de relargage de calcéine des vésicules PA/POPC/Chol (15/27.5/57.5), POPC/Chol (40/60) et POPC étaient très semblables à celle de PA/Chol (30/70). Il a été remarqué que les études littéraires se contredisent à propos de la perméabilité à la calcéine des bicouches de phosphatidylcholine (PC). L’explication de ces divergences est inconnue pour le moment. En remplaçant la moitié de la proportion molaire de Chol par le cholate de sodium (SC) dans le mélange PA/Chol (30/70), la membrane n’était pas plus apte à libérer son contenu. Il se pourrait que le SC se retrouvant dans la bicouche n’induit pas une diminution d’empilement. Il est aussi possible que le SC ne s'insère pas dans la membrane à cause de son hydrophilie considérable et il pourrait alors former seul des micelles. En remplaçant complètement le Chol par le sulfate de cholestérol (SChol), un stérol chargé négativement, et en préparant les vésicules à un bas pH, la formulation PA/SChol (30/70) mène à une très grande perméabilité à pH 7.5; le relargage est provoqué par un saut de pH. Nos travaux suggèrent qu'il serait possible de moduler la perméabilité des liposomes en les préparant avec le mélange PA/SChol/Chol en variant les proportions entre 30/63/7 à 30/70/0. Le diagramme pH-composition du mélange PA/SChol/Chol indique que ces proportions conduisent, à pH 7.4, à la coexistence de phases solide et lo en différentes proportions, ce qui pourrait moduler la perméabilité membranaire. Troisièmement, les résultats de perméabilité obtenus avec la calcéine et les difficultés survenues lors de l’extrusion des vésicules encapsulant cette sonde nous ont amené à nous demander si la calcéine interagit avec les bicouches chargées. L’impact de certains anions, dont la calcéine, a été examiné sur les bicouches chargées positivement SA/Chol (50/50). La calorimétrie différentielle à balayage (DSC, de l’anglais differential scanning calorimetry), indique qu’il n’y a aucune transition entre 25 et 90 °C pour les liposomes SA/Chol (50/50) à pH = 7.4. L’ajout de chlorure de sodim (375 mM) n’a pas mené à la formation d’agrégats et aucune transition n’a été observée sur le thermogramme. La formation d’agrégats macroscopiques instantanément après l’ajout d’hydrogénophosphate de sodium (125 mM), de sulfate de sodium (125 mM) et de calcéine (3 mM) a été observée. Une transition a été observée sur les thermogrammes en présence de ces sels. Les agrégats observés pourraient être associés à la transition de phase. L’effet des anions sur la température et l’enthalpie de transition suivent le même ordre que la série d’Hofmeister : sulfate > hydrogénophosphate > chlorure (pas de pic). La calcéine avait l’impact le plus prononcé sur l’agrégation; ceci illustre que la calcéine n’est pas une sonde fluorescente inerte avec le mélange SA/Chol. Elle pourrait être un chaotrope volumineux. De plus, les interactions SA-calcéine plus fortes, menant à l’agrégation des vésicules, que les interactions PC-calcéine pourraient s’expliquer par le fait que la SA est chargée positivement. / Sterosomes are artificial vesicles that are composed of monoalkylated amphiphiles and a large percentage of sterols. They are promising in areas such as pharmaceutical and food industries. Sterosomes can be found in anionic, cationic and neutral form. The work of this master’s thesis focuses on gaining additional knowledge on the physicochemical properties of charged sterosomes such as palmitic acid (PA)/sterol and stearlyamine (SA)/cholesterol (Chol). Our first aim was to find an approach to form liquid-ordered (lo) bilayers that can orient in a magnetic field with the PA/sterol (30/70 mol/mol) mixture. This will allow us to study the lateral diffusion of PA. It has been demonstrated that mixing 1,2-diheptanoyl-sn-glycero-3-phosphocholine (DHPC), a short chain lipid, with 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) results in bilayers that orient with their normal (n) perpendicular to the magnetic field. Therefore, perdeuterated PA/hexanoic acid (HA)/Chol (25/18/57) mixture was studied at different temperatures; however, results showed no bilayer orientation. It was suggested that this could be due to the partial solubility of HA in aqueous phase. Consequently, an insufficient quantity of HA was available to induce bilayer orientation. Furthermore, perdeuterated PA/DHPC/Chol mixture was studied at different temperatures and lipid concentrations, which also led to no bilayer orientation. While studying DMPC/DHPC/Chol (67/17/14) formulation, it was understood that Chol inhibits bilayer orientation. On the other hand, two different molar proportions of DMPC/DHPC/stigmasterol (SS) (67/19/14 and 72/21/7) led to bilayers that orient with their n perpendicular to the magnetic field at 40 °C et 50 °C. These results suggest that by adding a short chain lipid such as HA and DHPC to PA/SS mixture could lead to oriented bilayers. Another interesting track would be to work with PA/short chain lipid/Chol mixture in the presence of lanthanides. Our second aim was to find different formulations of vesicles, containing at least PA and a sterol, with distinctive permeability. It has already been established that PA/Chol (30/70) bilayers are in lo phase as long as PA is deprotonated (pH ≥ 7,5) and have a very limited permeability. The ability to modulate permeability would allow control over the release time of an encapsulated product, which is an important parameter in the development of novel liposomal drug delivery systems. It was proven that oleic acid (OA)/Chol (30/70) mixture is able to form bilayers, which has not been shown previously. However, OA/Chol (30/70) bilayers were not much more permeable than PA/Chol (30/70) bilayers. Adding 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) in PA/Chol system did not lead to higher permeability either. Results of calcein release kinetics from PA/POPC/Chol (15/27.5/57.5), POPC/Chol (40/60) and POPC vesicles were not very different from the one found for PA/Chol (30/70) vesicles. It was noted that contradictory results were found in the literature regarding calcein permeability from phosphatidylcholine (PC) membranes. For the moment, explanations related to these divergences have yet to be given. Furthermore, no increase in membrane permeability was found after substituting half of the molar proportion of Chol by sodium cholate (SC) in PA/Chol (30/70) mixture. One suggestion would be that SC insertion in the bilayer does not induce a reduction in the packing of lipids. Another suggestion would be that SC does not insert in PA/Chol bilayers due to its considerable hydrophilic character and forms micelles on its own. Highly permeable membrane was found when Chol was completely replaced by cholesterol sulfate (SChol), a negatively charged sterol, and vesicle preparation was done at low pH. The pH-triggered release method was used. Our work suggests that by varying the molar proportion of PA/SChol/Chol mixture between 30/63/7 and 30/70/0, it would be possible to obtain different vesicle formulations with distinctive permeability. In between these molar proportions, the pH-composition diagram of PA/SChol/Chol shows the coexistence of solid and lo phases in different proportions at pH 7.4, which could modulate the permeability. Some ambiguous calcein release results and struggles arising from the extrusion of calcein-encapsulated liposomes led us to wonder if this dye interacts with charged bilayers. The impact of some anions, including calcein, was examined on SA/Chol (50/50) charged bilayers. Thermodynamic studies were done by differential scanning calorimetry (DSC). SA/Chol (50/50) mixture showed no transition between 25 and 90 °C at pH 7.4. In the presence of sodium chloride (375 mM), there was no indication of aggregation or the appearance of a transition on the thermogram. Macroscopic aggregates were instantly observed after addition sodium hydrogenphosphate (125 mM), sodium sulphate (125 mM) and calcein (3 mM). Furthermore, a phase transition was also noticed on the thermograms in the presence of these salts. It is suggested that the appearance of the transition can be associated with the formation of aggregates. The effect of anions on the transition temperature and enthalpy follows the Hofmeister series: sulfate > hydrogenphosphate > chloride (no peak). Calcein had the highest impact on the formation of aggregates. This indicates that calcein is not a good candidate to be used as a fluorescent dye with SA/Chol mixture. It was suggested that calcein could be a large chaotrope anion. In contrast to PC-calcein interactions, SA-calcein interactions led to the aggregation of vesicles probably due to stronger interactions in the presence of positively charged SA.

Les protéines membranaires intégrales jouent un rôle essentiel dans le maintien de l’intégrité cellulaire (transports d’ions et de nutriments, transduction de signal, interaction cellule-cellule). Afin de les étudier, ces protéines doivent être produites in vitro. La production classique de ces protéines membranaires intégrales dans des microorganismes présente de nombreuses difficultés liées à leur structure complexe mais aussi à des problèmes de toxicité, empêchant la production de nombre d’entre elles. En outre, pour être produites efficacement, ces protéines ont besoin d’un environnement amphiphile. Dans cette thèse, afin de pallier à ces difficultés, nous avons d’une part utilisé un système d’expression protéique acellulaire, non affecté par la physiologie des cellules vivantes. En outre, nous avons choisi de les intégrer dans des bicouches lipidiques planes reconstituées artificiellement. Dans une première partie, nous avons mis au point l’intégration d’une protéine membranaire intégrale formant un pore, l’alpha hémolysine, dans une bicouche lipidique supportée. Certaines protéines nécessitant un espace plus important de part etd’autre de la membrane, nous avons, dans une seconde partie, développé une bicouche lipidique espacée et ancrée par fusion de liposomes sur des surfaces d’or. Nous démontrons qu’il est possible d’y incorporer des protéines membranaires de type Aquaporine Z sous certaines conditions. Dans une troisième partie, dédiée à la formation de membranes biomimétiques utilisant des molécules lipidiques provenant d’Escherichia coli, nous montrons que la modification de la composition membranaire ne semble pas avoir d’incidence sur l’incorporation de protéines. Enfin, dans une dernière partie, nous avons réalisé des premiers essais d’insertion de protéines membranaires, de type alpha hémolysine, dans des bicouches suspendues afin de montrer que ces protéines produites par le système d’expression acellulaire sont fonctionnelles. / Integral membrane proteins play an essential role in the cell integrity preservation (transport of nutrients and ions, signal transduction, cell-cell interaction). In order to study these proteins, they have to be produced in vitro. Classical production of integral membrane proteins in microorganisms present many difficulties associated with their complex structure and also toxicity problems, preventing production of many of them. Moreover, to be efficiently produced, these proteins require an amphiphilic environment. In order to overcome these difficulties, we used a cell-free protein expression system, unaffected by the physiology ofliving cells. In addition, we chose to integrate them into artificial planar lipid bilayers. In a first part, we have developed the integration of an integral membrane protein forming a pore, the alpha hemolysin, in a supported lipid bilayer. Some proteins require more space on each side of the membrane, therefore in a second part, we have developed a tethered lipid bilayer membrane by liposome fusion on gold surfaces. We demonstrate that it is possible to incorporate membrane protein Aquaporin Z under certain conditions. The third part is dedicated to the formation of biomimetic membranes using lipid molecules from Escherichiacoli, we show that the membrane composition do not affect the protein incorporation. Finally, we have tested alpha hemolysin membrane proteins insertion in suspended lipid bilayers membranes to show that these proteins produced by the cell-free expression system are functional.

Biological membranes are heterogeneous two-dimensional fluids composed of lipids, sterols and proteins that act as complex gateways and define the cell boundary. The functions of these interfaces are diverse and specific to individual organisms, cell types, and tissues. Membranes must take up nutrients and small molecules, release waste products, bind ligands, transmit signals, convert energy, sense the environment, maintain cell adhesion, control cell migration, and much more while forming a tight barrier around the cell. The molecular mechanisms and structural details responsible for this diverse set of functions of biological membranes are still poorly understood, however. Developing new tools capable of probing and determining the local molecular organization, structure, and dynamics of membranes and their components is critical for furthering our knowledge about these important cellular processes that are often linked to health and diseases. Combinatorial microscopy takes advantage of the rich properties of light (intensity, wavelength, polarization, etc.) to create new forms of imaging that quantify the motions, orientations, and binding kinetics of the sample’s biomolecular constituents. These new optical imaging modalities can also be further combined with other types of microscopy to produce spatially correlated micrographs that provide complementary pieces of information about the sample under investigation that would otherwise remain hidden from the observer if the two imaging techniques were applied independently. The first part of this thesis provides a detailed account of the construction of a specialized hybrid microscopy platform that combines polarized total internal reflection fluorescence microscopy (pTIRFM) with atomic force microscopy (AFM) for the purpose of studying fundamental sterol-lipid and antimicrobial peptide-lipid interactions in model membranes. The second half describes a combined pTIRFM and Förster resonance energy transfer (FRET) imaging method to elucidate the oligomeric state and spatial distribution of carcinoembryonic-antigen-related cell-adhesion molecules (CEACAMs) in the membranes of living cells.

Biological membranes are heterogeneous two-dimensional fluids composed of lipids, sterols and proteins that act as complex gateways and define the cell boundary. The functions of these interfaces are diverse and specific to individual organisms, cell types, and tissues. Membranes must take up nutrients and small molecules, release waste products, bind ligands, transmit signals, convert energy, sense the environment, maintain cell adhesion, control cell migration, and much more while forming a tight barrier around the cell. The molecular mechanisms and structural details responsible for this diverse set of functions of biological membranes are still poorly understood, however. Developing new tools capable of probing and determining the local molecular organization, structure, and dynamics of membranes and their components is critical for furthering our knowledge about these important cellular processes that are often linked to health and diseases. Combinatorial microscopy takes advantage of the rich properties of light (intensity, wavelength, polarization, etc.) to create new forms of imaging that quantify the motions, orientations, and binding kinetics of the sample’s biomolecular constituents. These new optical imaging modalities can also be further combined with other types of microscopy to produce spatially correlated micrographs that provide complementary pieces of information about the sample under investigation that would otherwise remain hidden from the observer if the two imaging techniques were applied independently. The first part of this thesis provides a detailed account of the construction of a specialized hybrid microscopy platform that combines polarized total internal reflection fluorescence microscopy (pTIRFM) with atomic force microscopy (AFM) for the purpose of studying fundamental sterol-lipid and antimicrobial peptide-lipid interactions in model membranes. The second half describes a combined pTIRFM and Förster resonance energy transfer (FRET) imaging method to elucidate the oligomeric state and spatial distribution of carcinoembryonic-antigen-related cell-adhesion molecules (CEACAMs) in the membranes of living cells.

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No description available.

Endocytosis is one of the most fundamental mechanisms by which the cell communicates with its surrounding. Specific signals are transduced through the cell membrane by a complex interplay between proteins and lipids. Clathrin depended endocytosis is one of important signalling pathways which leads to budding of the plasmalemma and a formation of endosomes. The FCHo2 is an essential protein at the initial stage of the this process. In is a membrane binding protein containing BAR (BIN, Amphiphysin, Rvs) domain which is responsible for a membrane binding. Although numerous valuable work on BAR proteins was published recently, the mechanistic description of a BAR domain functionality is missing. In present work we applied in vitro systems in order to gain knowledge about molecular basis of the activity of the FCHo2 BAR domain. In our studies we used supported lipid bilayers (SLBs) and lipid monolayers as s model membrane system. The experiments were carried out with a minimal number of components including the purified FCHo2 BAR domain. Using SLBs we showed that the BAR domain can bind to entirely flat bilayers. We also demonstrated that these interactions depend on the negatively charged lipid species incorporated in the membrane. We designed an assay which allows to quantify the membrane tubulation. We found out that the interaction of the FCHo2 BAR domain with the lipid membrane is concentration dependent. We showed that an area of the bilayer deformed by the protein depends on the amount of the used BAR domain. In order to study the relation between the mobility of lipids and the activity of FCHo2 BAR domain we designed a small-volume monolayer trough. The design of this micro-chamber allows for the implementation of the light microscopy. We demonstrated that the measured lipid diffusion in the monolayer by our new approach is in agreement with literature data. We carried out fluorescence correlation spectroscopy (FCS) experiments at different density of lipids at the water-air interface.We showed that the FCHo2 BAR domain binding affinity is proportional to the mean molecular area (MMA). We additionally demonstrated that the increased protein binding is correlated with the higher lipid mobility in the monolayer. Additionally, by curing out high-speed atomic force microscopy (hsAFM) we acquired the structural information about FCHo2 BAR domains orientation at the membrane with a high spatio-temporal resolution. Obtained data indicate the BAR domains interact witheach other by many different contact sites what results in a variety of protein orientations in a protein assemble.

There was a fame time for silicon in condensed matter physics, then the graphene era came and now topological insulators are gaining lot of attention, but magnetism in condensed matter physics has remained always fascinating starting from the ancient days up to now and it will remain as one of the core topic in basic or applied physics. The improvement in the modern techniques allows one to explore magnetism in different length scales as well as in different time scales. As an effect of the improvement in experimental techniques, different magnetic anomalies are unearthed. As a result theories are getting refined and the area of magnetism progresses. From the material point of view, oxides carry the most diverse nature in condensed matter starting from high temperature superconductivity (HTS), colossal magnetoresistance, metal insulator transition etc. to ferromagnetism (FM), anti-ferromagnetism (AFM), spin glass (SG) and so on. Among this list, SG and HTS are one of the least understood topics in magnetism till today. A large research community is involved in understanding the underlying physics behind these two, especially in transition metal oxides. It has drawn attention not only due to fundamental aspects but also due to various applications in day to day life. This thesis is an attempt to understand these two phenomena in transition metal oxides. As the title of this thesis suggest, it is all about magnetic and magneto-transport properties of certain transition metal oxide (crystalline) addressing the interplay between two competing order parameters to understand the underlying physics behind it from an experimental point of view. We have studied two different kinds of competing interactions: (i) the FM/AFM interplay either in bulk or at the interface of the two layers in thin films; (ii) the interplay between FM and superconductivity (SC) in superconductor (S)/ferromagnet (F) heterostructures. Basically both of these two kinds lead to non-equilibrium phenomena in these oxides. One of such competition is between FM and AFM leading to slow dynamics (glassy physics). Disorder and frustrations are the key ingredients for such slow dynamics. The spin frustration arises either due to geometry or due to competing interactions. For example, in a triangular antiferromagnet due to the triangular geometry spins gets frustrated. Now, if it prevails spin disorder as well then it satisfies both the criteria for a spin glass and hence it gives birth to glassiness. Another kind of competition is the interplay among SC and FM. It is known that SC and FM are two antagonistic quantum phenomena thus in a single material SC (singlet pairing) and FM does not co-exist. However one can realize this by making F/S heterostructures and observe the battle between these two competing order parameters. The spin polarized quasiparticle injection from F creates non equilibrium spin density inside S and thereby suppressing the order parameter of S. Also by choosing an appropriate ferromagnet the vortex motion inside S can be arrested to certain extent which can enhance the critical current density of S. Thus FM/SC interplay has become an alternative way to look at the high temperature superconductivity. This thesis is categorized into nine chapters. The summary of each chapter is as follows: Chapter: 1 contains certain concepts of magnetism and superconductivity which is useful to understand the topics and experiments described in this thesis. Chapter: 2 gives the underlying principles of the various experimental techniques used in this thesis. Chapter: 3 describes the magnetic properties of successfully synthesized five compositions of LixNi(2-x)O2 (0.67<x<0.99) which has five distinct ground states namely antiferromagnet (AF), spin glass (SG), cluster glass (CG), re-entrant spin glass (RSG) and ferromagnet (FM). The SG and CG ground state has been well described by the frequency dependent peak shift. From the power-law divergence of critical slowing down the estimated value of relaxation time indicates the presence of interacting macro spins (spin cluster) rather than individual spins in certain LixNi(2-x)O2 samples possessing CG ground state which is also supported by the Arrhenius law. The shift in the spin freezing temperature with the application of dc field obeys Almeida-Thouless line. It also exhibits memory effect which is generic to the slow dynamics. The remnant magnetization relaxation follows logarithmic decay. Interestingly, the sample having RSG ground state shows memory effect up-to 50K and behaves like a FM above that temperature. FC-ZFC M(T) curve shows a splitting at the ordering temperature. The critical analysis across the ferromagnetic-paramagnetic phase transition yields a self-consistent γ, β and δ value and the spin-spin interaction in this material follows long range mean field model. The critical exponents obey Widom scaling law: δ = 1 + γ β −1. The universality class of the scaling relations is also verified where the scaled m and scaled h collapses into two branches. Finally the magnetic phase diagram illustrates a vivid picture of the gradual evolution of ferromagnetism in LixNi(2-x)O2 through a glassy state. As a concluding remark, we think, the present study of glassy physics in magnetic insulator/semiconductor sets an example to compare them with the conventional metallic spin glass system. Chapter: 4 exhibits the results of the structural, magnetic and transport measurements to elucidate some of the most striking unusual physical responses of bulk SrRuO3. Two set of polycrystalline SrRuO3 samples with unique ordering temperature have been synthesized. In one case, we have taken the stoichiometric weight ratio of precursors that eventually resulted in Ru-deficient SrRuO3(SROD). In the other case, we have taken extra 2% wt. RuO2 deliberately to form stoichiometric SrRuO3(SRO). Both the samples are found to crystallize in orthorhombic crystal structure with Pnma space group. The low temperature magnetization is found to be well described by the Bloch T3/2 law and the magnetization near Tc is found to follow the scaling law; M~(Tc-T)β with β=0.35 and β=0.30 for SRO and SROD respectively, apparently showing the 3D Ising behaviour. This aspect will be elaborated in the next chapter. The magnetic ac susceptibility study exhibits a broad hump far below the ferromagnetic ordering temperature and the frequency dependence of this hump position exhibits the characteristics of multiple relaxations. Most strikingly, we notice a low temperature glassy magnetic behaviour clearly demonstrated by the time dependent memory effect. This is very surprising and unlikely to happen in systems, which have itinerant ferromagnetic character. However, we conjecture that slow domain growth and spin canting could be the cause for such effect. The transport study evidences a crossover from Fermi liquid (FL) to non-Fermi liquid (NFL) behaviour around 40 K and a slope change in dρ/dT vs. T plot in the vicinity of that temperature. Astonishingly, we observe two distinct dips (one around ferromagnetic ordering temperature and the other far below the ferromagnetic ordering temperature) in the temperature dependent MR response. In addition, we also observe the signature of an unusual dip in the temperature dependent coercive field towards low temperature side. The emergence of such unusual magnetic and transport response is strongly believed to be connected with hidden magnetic interactions. Our effort on neutron diffraction study has been able to trace the cause of such cryptic magnetic interaction. The findings of neutron diffraction study evidence the change in the unit cell lattice parameters around 75 K and that could be the central cause behind such anomalous low temperature magnetic responses. It also demonstrates that the octahedral tilt freezes around the FM transition and has a minimum around the low temperature glass transition temperature. Most remarkably we observe a decline in the total integrated magnetic intensity towards the low temperature side indicating the presence of antiferromagnetic like interaction in SrRuO3. Chapter: 5 resolves the ambiguity in determining the crritical exponents in SrRuO3. Most remarkably, the application of scaling law in the FC magnetization leads a systematic change in the values of critical exponent with the measuring field in SRO. The β value changes from 0 to o.44 to to 0.29 (corresponds to mean field to Ising) with the increase in the measurement field from 10 to 2500 Oe. However, the H→0 extrapolation fields β=0.5. In order to substantiate the actual nature, the critical behavior is studied across the phase transition from the M-H isotherms. The critical analysis yields a self-consistent β, γ and δ values and the spin-spin interaction follows long range mean field δ=γ β model 1+. The critical exponents also obey Widom scaling law: δ = 1 + γ β-1 The universality class of the scaling relations is verified where the scaled m and scaled h collapses into two branches. We have also found that Ru deficiency does not affect the nature of the spin-spin interaction (though ferromagnetism gets reduced). Further the directional dependence of the critical exponent reflects the isotropic nature of the magnetic interaction. In other words the spin-spin interaction found to be: i) three dimensional, ii) long range, iii) mean field type and iv) isotropic in SrRuO3. We have also found magnetocaloric effect (calculated from the M-H isotherms) that across the phase transition. The specific heat measurements find sharp jump at the ferromagnetic transition due to the magnetic contribution of the specific heat. Chapter: 6 describes the magnetism at the SrRuO3 (SRO)/LaAlO3 (LAO) interface where SRO is an itinerant ferromagnet (FM) and LAO is non-magnetic (NM) (rather diamagnetic). Most surprisingly SRO/LAO exhibits pronounced exchange bias (EB) effect realized by observing a shift in the field cooled M-H hysteresis. Further investigation results an increasing trend of the strength of the EB with the decreases in the thickness of ferromagnetic layer. This system also displays the training effect which essentially confirms that this effect is due to EB. EB arises due to the uncompensated spins at the FM/AFM interface hence the EB effect in SRO/LAO system is unconventional. However, the origin of such AFM interaction (responsible for EB effect in FM/NM system) at SRO/LAO interface is realized and explained through the temperature dependence of the EB effect. Further, we have extensively investigated EB effect in other analogous ferromagnets, FM/FM bilayers and FM/FM superlattices. We found that La0.7Sr0.3MnO3 (LSMO) grown on LAO exhibits the signature of EB. In contrast to that La0.5Sr0.5CoO3 (LSCO) does not show any signature of EB. All the bilayers (LSMO/SRO, LSMO/LSCO and LSCO/SRO) exhibit EB and have similar kind of temperature dependence. In order to gain more insight we have grown a (LSMO/SRO)8 superlattice and observed a complex magnetic behaviour. It exhibits partial inverted magnetic hysteresis. But the system shows EB effect characterized by the shift in the FC hysteresis and training effect. All these observations essentially demonstrate that the magnetic nature of various ferromagnetisms at the interfaces can be changed by choosing a proper partner (acts like adding perturbations into one of those system which lies close to the instability region). Chapter: 7 presents the magneto-transport properties of three SRO films grown on LAO (100) of thicknesses of 12, 24 and 48 nm are studied extensively. For a one to one comparison one of the sample is also grown on STO(100). The coercivity vs. temperature in SRO(48 nm)/LAO exhibits a plateau at ~40 K. The dR/dT exhibits the low temperature hump in all the samples which very much replicates with the bulk scenario that we observed in SRO. Most strikingly the 12 nm SRO sample exhibits NFL behaviour throughout the temperature range of measurement (10-150 K). Our careful investigation reveals a cross-over from FL to NFL in all SRO thin films. The cross-over temperature increases with the increase in thickness and eventually shifts towards the bulk cross-over value. It is apt to remind that in bulk SRO we have demonstrated (by employing temperature dependent neutron diffraction) that there is a presence of antiferromagnetic like interaction at low temperature giving birth to glassiness in bulk SRO. Further, an attempt is made to understand the low temperature magneto-transport anomaly by looking into the spin fluctuation through the low frequency 1/f noise measurements. It conveys a message that there are two types of magnetic ordering present in SRO giving rise to two peaks in the temperature dependence of the relative variance. Application of magnetic field suppresses both the peaks in the relative variance. This certainly indicates that the origin of such peak is caused by the spin fluctuations and thereby it is of magnetic origin. Further we have looked into the Hall effect of a structured (Hall patterned) SRO thin film and observed regular Hall effect (RHE) as well as anomalous Hall effect (AHE) in it. Most remarkably the temperature dependence of the RHE coefficient changes its sign close to the ferromagnetic transition temperature of SRO. This implies a change of the type of the carrier as the temperature is varied. Based on these results, the carrier concentration of SRO as a function of temperature is determined. Chapter: 8 is about the magnetic and magnetotransport studies on the successfully grown high quality S/F heterostructures. The oxygen content plays a vital role in superconductivity of oxide materials thus for studying FM/SC interplay in oxides we have discussed how to achieve a high quality sample (oxygen stoichiometric). We have observed a great influence of a FM in suppressing the superconductivity in YBa2Cu3O(7-δ) (YBCO) in FM/SC heterostructures. The analysis of the out of plane M-H hysteresis reveals a significant reduction of the critical fields (HC1 and HC2) of the SC (in SRO/YBCO bilayer) which might have a great significance to understand the superconductivity in a better way (from both the perspectives: theory and experiments). Most remarkably we have found 40% enhancement of the critical current density of YBCO in SRO/YBCO bilayer. We have demonstrated that in order to see the effect of spin polarizes quasiparticle (SPQP) injection into YBCO, one should not apply more than 20mA current since Joule heating contribution wins over pair breaking effect. The SPQP injection from SRO into YBCO exhibits pair breaking effect as the TC (of the SC) shift follows I2/3 law. The resistive transitions under various applied magnetic fields and the field dependence of the activation energy confirms that the vortices are in the 2D regimes (it follows power law, U0~Hα withα=0.5) in SRO/YBCO. To get a better insight into the FM/SC interplay we have looked into two of the FM/YBCO combinations (LSCO/YBCO and LSMO/YBCO). We observe that the degree of the spin polarizations of the FMs scales with the suppression of superconductivity in YBCO which means more the spin polarization more is the suppression. We have also found out that spin polarization is not the sole parameter in suppressing superconductivity in SRO/YBCO bilayers. It also depends upon the state of magnetization of the ferromagnet. Further, we observed a significant reduction (one order) of the activation energy in LSCO/YBCO compared to SRO/YBCO which clearly indicates that the vortex dynamics might depend on other aspects as well (of the FM). It also reveals the formation of decoupled pancake vortices (pure 2D regime) in LSCO/YBCO and LSMO/YBCO bilayers whereas in case of YBCO and SRO/YBCO it is of 2D coupled type. Chapter: 9 summarizes the whole work presented in this thesis. It also discusses about few research problems which one need to look at in future.

Discovery of grapheme has paved way for experimental realization of many physical phenomena such as massless Dirac fermions, quantum hall effect and zero-field conductivity. Search for other two dimensional (2D) materials led to the discovery of boron nitride, transition metal dichalcogenides(TMDs),transition metal oxides(MO2)and silicene. All of these materials exhibit different electronic and transport properties and are very promising for nanodevices such as nano-electromechanical-systems(NEMS), field effect transistors(FETs),sensors, hydrogen storage, nano photonics and many more. For practical utility of these materials in electronic and photonic applications, varying the band gap is very essential. Tuning of band gap has been achieved by doping, functionalization, lateral confinement, formation of hybrid structures and application of electric field. However, most of these techniques have limitations in practical applications. While, there is a lack of effective method of doping or functionalization in a controlled fashion, growth of specific sized nanostructures (e.g., nanoribbons and quantum dots),freestanding or embedded is yet to be achieved experimentally. The requirement of high electric field as well as the need for an extra electrode is another disadvantage in electric field induced tuning of band gap in low dimensional materials. Development of simpler yet effective methods is thus necessary to achieve this goal experimentally for potential application of these materials in various nano-devices. In this thesis, novel methods for tuning band gap of few 2D materials, based on strain and stacking, have been proposed theoretically using first principles based density functional theory(DFT) calculations. Electronic properties of few layered nanomaterials are studied subjected to mechanical and chemical strain of various kinds along with the effect of stacking pattern. These methods offer promising ways for controlled tuning of band gap in low dimensional materials. Detailed methodology of these proposed methods and their effect on electronic, structural or vibrational properties have also been studied. The thesis has been organized as follows: Chapter1 provides a general introduction to the low dimensional materials: their importance and potential application. An overview of the systems studied here is also given along with the traditional methods followed in the literature to tune their electronic properties. The motivation of the current research work has also been highlighted in this chapter. Chapter 2 describes the theoretical methodology adopted in this work. It gives brief understanding of first principles based Density Functional Theory(DFT) and various exchange and correlation energy functionals used here to obtain electronic, structural, vibrational and magnetic properties of the concerned materials. Chapter 3 deals with finding the origin of a novel experimental phenomenon, where electromechanical oscillations were observed on an array of buckled multiwalled carbon nanotubes (MWCNTs)subjected to axial compression. The effect of structural changes in CNTs in terms of buckling on electronic properties was studied. Contribution from intra-as well as inter-wall interactions was investigated separately by using single-and double-walled CNTs. Chapter 4 presents a method to manipulate electronic and transport properties of graphene bilayer by sliding one of the layers. Sliding caused breaking of symmetry in the graphene bilayer, which resulted in change in dispersion in the low energy bands. A transition from linear dispersion in AA stacking to parabolic dispersion in AB stacking is discussed in details. This shows a possibility to use these slid bilayers to tailor graphene based devices. Chapter 5 develops a method to tune band gap of bilayers of semiconducting transition metal dichalcogenides(TMDs) by the application of normal compressive strain. A reversible semiconductor to metal(S-M) transition was reported in this chapter for bilayers of TMDs. Chapter 6 shows the evolution of S-M transition from few layers to the bulk MoS2 under various in-plane and out of plane strains. S-M transition as a function of layer number has been studied for different strain types. A comparison between the in-plan and normal strain on modifying electronic properties is also presented. Chapter 7 discusses the electronic phase transition of bulk MoS2 under hydrostatic pressure. A hydrostatic pressure includes a combined effect of both in-plane and normal strain on the structure. The origin of metallic transition under pressure has been studied here in terms of electronic structure, density of states and charge analysis. Chapter 8 studies the chemical strain present in boron nitride nanoribbons and its effect on structural, electronic and magnetic properties of these ribbons. Properties of two achiral (armchair and zig-zag) edges have been analyzed in terms of edge energy and edge stress to predict stability of the edges. Chapter9 summarizes and concludes the work presented in this thesis.