De nombreuses biomolécules qui constituent les plantes vasculaires ne sont synthétisées que par certains taxons de plantes et ont donc une spécificité chimiotaxonomique. Certaines d'entre elles, tels que les bioterpénoïdes, sont particulièrement résistantes et sont préservées dans les sédiments où elles se transforment en géoterpénoïdes lors de la diagenèse. Ces géoterpénoïdes conservent, partiellement ou totalement, leur spécificité initiale (spécifité paléochimiotaxonomique). Cependant, nos connaissances actuelles en paléochimiotaxonomie botanique, qui permettent d'associer ces biomarqueurs moléculaires à des taxons végétaux, restent encore lacunaires. L'objectif de cette étude est de déterminer la signature moléculaire des familles de conifères fossiles. 68 représentants appartenant aux 7 familles actuelles de conifères ont été artificiellement maturés par pyrolyse en milieu confiné afin de reproduire en laboratoire la transformation des bioterpénoïdes en géopterpénoïdes. Les résultats montrent que les Pinaceae, les Araucariaceae, les Cupressaceae, les Sciadopityaceae, les Podocarpaceae, les Taxodiaceae et les Taxaceae "fossilisés" peuvent se distinguer par la nature et la proportion relative de ces terpénoïdes. De plus, la comparaison des signatures moléculaires ont permis de réaliser des regroupements intergénériques pour chaque famille. Ces regroupements sont comparables avec ceux de la classification phylogénétique. À terme, ces résultats pourront être utilisés dans le cadre d’études paléobotaniques, paléoenvironnementales, environnementales et archéologiques / Many biomolecules that constitute terrestrial vascular plants are only synthesized by a restricted number of plant taxa and have thus a chemotaxonomic specificity. Some of these biomolecules, like the terpenoids, are particularly resistant and can be preserved within sediments where they are transformed into geomolecules during diagenesis. Geoterpenoids keep, partially or totally, their initial specificity (palaeochemotaxonomic specificity). However, our current knowledge in botanical palaeochemotaxonomy, allowing to link these plant biomarkers to plant taxa, remains incomplete. The aim of this study is to determine the molecular signature of fossil conifers. In this objective, 68 species belonging to the 7 extant conifer families were subjected to artificial maturation by confined pyrolysis. This process converts the bioterpenoids included within the plant material into geoterpenoids. The results show that the "fossilized" Pinaceae, Araucariaceae, Cupressaceae, Sciadopityaceae, Podocarpaceae, Taxodiaceae and Taxaceae can distinguished from each other by the nature and the relative proportion of these geoterpenoids. The comparison of these molecular signatures allows to achieve intergeneric groups for each family. These groups are comparable to those of the phylogenetic classification. In the future, these results could be used for palaeobotanical, palaeoenvironmental, environmental and archaeological assessments

- 4 - ABSTRACT During the revision of epiphytic species of the Lecanora subfusca group in the Czech Republic, nine taxa have been recorded. L. cinereofusca and L. exspersa are reported for the first time from the country. L. circumborealis has been excluded from the list of Czech lichens. L. cinereofusca and L. horiza could be considered as extinct. L. rugosella and L. subrugosa are regarded as extreme morpholocial forms from L. chlarotera and L. argentata. These morphotypes corelate with ecological conditions: substrate (nutrient enriched bark) and habitat (eutrophisation effect). In case of L. subrugosa, this speculation was confirmed by molecular data (ITS rDNA sequences). Several new secondary metabolites have been discovered during the detailed research of chemical lichen compounds. These substances belonging to terpenoids are taxonomically important and very helpful for distinguishing single species. The abundance of L. allophana and L. chlarotera has decreased during last decades. Contrarily, L. pulicaris expanded slightly. The main reasons of changes in distribution are air pollution and acidification of substrates as the impact of acid rains. The rate of substrate acidification has been shown on example of L. pulicaris. In the past, this lichen predominated on acid-barked porophytes. Nowadays, it...

Afin d'apporter une aide pour la chimiotaxonomie du genre Stereocaulon, les acides gras totaux de dix espèces de Stéréocaulon, de quelques cyanolichens et d'une cyanobactérie ont été étudiés. Les profils obtenus des acides gras saturés, insaturés et ramifiés ont été comparés par classification hiérarchique ascendante. Les acides gras iso et antéiso pourraient permettre de distinguer le genre Stereocaulon des cyanolichens à la différence des autres classes d'acides gras. Dans un deuxième temps, l'étude phytochimique du lichen S. evolutum récolté en Bretagne a permis d'isoler et de caractériser 22 métabolites secondaires. Parmi ces composés, deux sont nouveaux. Sept molécules possèdent une structure proche de l'atranorine, depside abondant et récurrent chez les Stéréocaulons. L'atranorine ayant montré lors d'un criblage une activité intéressante sur le virus de l'hépatite C, six molécules ainsi que deux dérivés hémisynthétiques ont alors été évalués. L'atranorine et le 4-O-déméthylbarbatate de méthyle ont présenté une bonne activité anti-VHC, le premier ciblant l'étape de pénétration et le deuxième l'étape de réplication. D'autres composés, deux depsidones et cinq diphényléthers, ont été testés sur l'enzyme Protéine Tyrosine Phosphatase 1B (PTP1B) qui est une cible d'intétêt dans le traitement du diabète de type 2 et le cancer du sein. Les deux depsidones (acide lobarique, acide norlobarique) et un diphényléther, l'anhydro-sakisacaulon A, ont montré une inhibition de PTP1B avec des CI₅₀ similaires au témoin acide ursolique. La modélisation de cette enzyme ayant été réalisée en parallèle, les études de docking ont permis de proposer des mécanismes d'interactions mis en jeu lors de l'inhibition de PTP1B par ces métabolites secondaires lichéniques et d'envisager l'optimisation structurale de ces composés en vue d'augmenter leur activité. / Total fatty acids (FA) of ten species of Stereocaulon in addition to cyanolichens and one cyanobacterium were studied. FA profiles based on saturated-, unsaturated- and branched chain-FAs were compared using a hierarchical ascendant classification. Cyanolichens differed from the Stereocaulon genus according iso- and anteiso-FAs profiles while no differences were seen according the other FAs families. The phytochemical study of Stereocaulon evolutum, harvested in Brittany, led to isolation and identification of 22 secondary metabolites. Two were new for lichens. Among the isolated compounds, seven compounds were structurally close to atranorin, a common and abundant depside in the Stereocaulon genus. In a previous screening, atranorin exhibited a noteworthy HCV inhibition, thus six lichen compounds and two synthetic molecules were also tested. Atranorin and methyl 4-O-demethylbarbatate were the most potent without any cytotoxicity, the first being active towards the virus penetration and the latter against the virus replication. Two depsidones and five diphenylethers were also isolated and were evaluated on the Protein Tyrosine Phosphatase 1B (PTP1B), a promising target for type 2 mellitus diabetis and breast cancer. Both depsidones (lobaric acid, norlobaric acid) and the diphenylether anhydrosakisacaulon A were as potent as the positive control ursolic acid. Simultaneously, a molecular docking study between PTP1B and the seven compounds suggested the most significant interactions to conceive possible more active compounds.

Le principal objectif de cette thèse, au caractère interdisciplinaire, concernait l'étude de l'éponge Biemna laboutei de Madagascar, connue pour sa toxicité (causant notamment des dermatites). Les travaux entrepris comprenaient en premier lieu, l'étude chimique de cette éponge incluant l'extraction, l'isolement et l'identification des métabolites secondaires par différentes techniques chromatographiques (CLMP, CLHP…) et spectroscopiques (UV-visible, HRMS, RMN 1D et 2D…). Dix-huit alcaloïdes appartenant à la classe rare des hétérocycles tricycliques (5,6,8b)-triazaperhydroacénaphtylène (i.e. ptilocaulines, mirabilines, nétamines) ont été isolés et identifiés. Douze de ces alcaloïdes tricycliques guanidiniques, de structures nouvelles, ont été nommées nétamines H-S. Ces composés ont été classés en fonction des insaturations de leur noyau tricyclique : type pyrimidine, insaturés en Δ8,8a et insaturés en Δ8a,8b. Pour deux des composés isolés, les nétamines I (58) et J (59), une étude configurationnelle reposant sur la comparaison de spectres UV et DCE, expérimentaux et théoriques (théorie de la fonctionnelle et de la densité), a permis la détermination de leurs configurations absolues : 5aS, 7R, 8R pour la nétamine I et 5aS, 7R, 8S pour la nétamine J. La valorisation des molécules isolées a ensuite été envisagée via d'une part la réalisation d'une étude chimiotaxonomique et d'autre part, l'évaluation de leurs activités biologiques (cytotoxicité, activité antipaludique, …). La nétamine M (62) a présenté une activité cytotoxique sur les cellules cancéreuses KB (CI50 = 1,0 μg/mL) et les nétamines O (64), Q (66) et K (60) se sont montrées actives contre le parasite Plasmodium falciparum, responsable du paludisme avec respectivement une CI50 de 4,66 ; 2,53 et 0,62 μg/mL. Enfin, au cours de ces travaux de thèse, ont été explorées trois nouvelles stratégies de synthèse conduisant au squelette des alcaloïdes guanidiniques tricycliques, suivant une approche biomimétique. / The main purpose of this interdisciplinary thesis was to study Biemna laboutei, a sponge from Madagascar, known to have toxic properties (dermatitis-producing). The chemical investigation of this sponge including extraction, isolation and identification of secondary metabolites was first undertaken using several chromatographic (HPLC, MPLC…) and spectroscopic (UV-visible, HRMS, NMR 1D et 2D…) techniques. Eighteen alkaloids belonging to the rare class of tricyclic (5,6,8b)-triazaperhydroacenaphtylene heterocycles (i.e. ptilocaulins, mirabilins, netamines) were isolated and identified. Twelve new alkaloids from this group of guanidine derivatives were named netamine H-S. These compounds were grouped on the basis of unsaturation and double bond regiochemistry, with pyrimidine, Δ8,8a and Δ8a,8b heterocycles. For two compounds, netamine I (58) and J (59), a joint theoretical (Density functional theory) and experimental study of UV and ECD spectra allowed the determination of their absolute configuration: 5aS, 7R, 8R for netamine I and 5aS, 7R, 8S for netamine J. The chemotaxonomic meaning of these alkaloids was discussed. Their biological activities were also evaluated. Netamine M (62) exhibited a cytotoxic activity towards KB cells (IC50 = 1,0 μg/mL) while netamine O (64), Q (66) and K (60) were active against the malaria parasite Plasmodium falciparum with IC50 value of 4,66; 2,53 and 0,62 μg/mL respectively. Finally, this work was also dedicated to the biomimetic synthesis of the tricyclic guanidine skeleton. Three new synthesis routes were explored.

Ceratitis fasciventris, Ceratitis anonae and Ceratitis rosa are polyphagous agricultural pests originating from African continent. Their behaviour is heavily altered by pheromones. Insect chemical communication channels are species-specific, represents taxonomic and reproduction barriers. Taxonomy of this group (so-called Ceratitis FAR complex) is unclear. Therefore new chemical approaches along with genetic tests for identification of entities within the cryptic species FAR complex are being developed. To study multi-component mixtures of male volatiles originating from the three mentioned fruit fly species, comprehensive two-dimensional gas chromatography with time- of-flight mass spectrometer (GC×GC-TOFMS) was used. A number of compounds were identified, out of which 23 were found to be distributed and shared among the studied species, 11 out of these were present in all three species. Analyses of male pheromone volatiles, using gas chromatography combined with electroantennographic detector (GC-EAD) revealed 4 common compounds with antennal activity shared among three studied species: methyl (E)-hex-3-enoate, 6-methylhept-5-en-2- one, linalool, and methyl (2E,6E)-farnesoate. The species-specific EAD active compounds in C. fasciventris were esters of isomers of hexenoic acid, whereas isomers of...

A study was undertaken of plants used for treatment of diabetic symptoms by traditional healers of the Eeyou Istchee Cree (Canada), Lukomir Highlanders (Bosnia & Herzegovina), and Q’eqchi’ Maya (Belize). All antidiabetic plants were ranked by syndromic importance value (SIV) based on 15 symptoms, all of which were recognized by the Cree and Maya and 8 by the Highlanders. The Cree used only 18 species, the Highlanders 41, and the Maya 150, numbers which reflect the diversity of flora in their region. Vaccinium (Ericaceae) was one of the few genera in all three regions and the only consensus genus between the Cree and Highlander study sites. The Q’eqchi’ Maya ethnobotany did not present any cross-cultural consensus genera with Cree or Highlander medicinal plants, perhaps due to major biogeographic differences. In ethnopharmacological studies, Vaccinium species and Q’eqchi’ antidiabetic plants were tested in an assay relevant to diabetes, the advanced glycation endproduct (AGE) inhibition assay. Boreal and tropical Vaccinium species were potent inhibitors of AGEs and demonstrated concentration dependent inhibition, with a half maximal inhibitory concentration (IC50) range of 5.93–100 µg/mL. Phenolic content ranged from 80.3 to 201 µg/mL in boreal samples and from 1470 to 2170 µg/mL in tropical samples. Tropical species have a greater phenolic content and AGE inhibition. Seven Q’eqchi’ antidiabetic plant species were tested and all plant extracts showed AGE-inhibition. The IC50s ranged from 40.8 to 733 µg/mL, and the most active was Tynanthus guatemalensis Donn.. Tynanthus guatemalensis IC50 was about fives times greater (less active) than the mean ± SE IC50 reported for six tropical Vaccinium species of Vaccinium (8.77 ± 0.79 μg/mL). The highest consensus and most active Maya antidiabetic plant, Tynanthus guatemalensis Donn. Sm. was discovered to be an important plant recorded in archeological artifacts from the Late Classic Maya period (~750 CE). Ancient Maya used a cross shaped sign (k’an glyph) as a decorative element on Late Classic polychrome vessels and murals. The sign was believed to be the xylem template for a plant used as a flavouring in cacao drinks. However, the plant was incorrectly identified in the literature as Pimenta dioica (L.) Merr. (common name: Allspice) based on a common name and aromatic plant quality – not from a botanical voucher specimen. Pimenta dioica wood does not have a cross shape visible in the xylem but a unique character visible after a cross section of T. guatemalensis, is the xylem's cross shape organization. Wood of T. guatemalensis' also has an "allspice" aroma. Tynanthus guatemalensis is most likely the true botanical template behind the ancient Maya k’an glyph and this finding would show the continuity of use of this medicinal plant from ancient to modern times. Vaccinium was selected for an in depth phytochemical analysis using modern metabolomic methods. Nuclear magnetic resonance (1H NMR) was used to evaluate leaf extract spectra to provide information on (1) the taxonomic identity and (2) quantities of bioactive metabolites across multiple sites. Spectra clearly differentiated leaf samples of V. angustifolium, V. boreale, V. corymbosum, V. macrocarpon, V. myrtilloides, V. myrtillus, V. ovalifolium, and V. uliginosum according to generic, subgeneric, specific, phenotypic circumscriptions. Quantification of chlorogenic acid and hyperoside were replicated with a method that is highly reproducible across multiple sites with different NMR equipment. This methodology provides an important new approach to taxonomy and quality control for plants and natural health products.

A study was undertaken of plants used for treatment of diabetic symptoms by traditional healers of the Eeyou Istchee Cree (Canada), Lukomir Highlanders (Bosnia & Herzegovina), and Q’eqchi’ Maya (Belize). All antidiabetic plants were ranked by syndromic importance value (SIV) based on 15 symptoms, all of which were recognized by the Cree and Maya and 8 by the Highlanders. The Cree used only 18 species, the Highlanders 41, and the Maya 150, numbers which reflect the diversity of flora in their region. Vaccinium (Ericaceae) was one of the few genera in all three regions and the only consensus genus between the Cree and Highlander study sites. The Q’eqchi’ Maya ethnobotany did not present any cross-cultural consensus genera with Cree or Highlander medicinal plants, perhaps due to major biogeographic differences. In ethnopharmacological studies, Vaccinium species and Q’eqchi’ antidiabetic plants were tested in an assay relevant to diabetes, the advanced glycation endproduct (AGE) inhibition assay. Boreal and tropical Vaccinium species were potent inhibitors of AGEs and demonstrated concentration dependent inhibition, with a half maximal inhibitory concentration (IC50) range of 5.93–100 µg/mL. Phenolic content ranged from 80.3 to 201 µg/mL in boreal samples and from 1470 to 2170 µg/mL in tropical samples. Tropical species have a greater phenolic content and AGE inhibition. Seven Q’eqchi’ antidiabetic plant species were tested and all plant extracts showed AGE-inhibition. The IC50s ranged from 40.8 to 733 µg/mL, and the most active was Tynanthus guatemalensis Donn.. Tynanthus guatemalensis IC50 was about fives times greater (less active) than the mean ± SE IC50 reported for six tropical Vaccinium species of Vaccinium (8.77 ± 0.79 μg/mL). The highest consensus and most active Maya antidiabetic plant, Tynanthus guatemalensis Donn. Sm. was discovered to be an important plant recorded in archeological artifacts from the Late Classic Maya period (~750 CE). Ancient Maya used a cross shaped sign (k’an glyph) as a decorative element on Late Classic polychrome vessels and murals. The sign was believed to be the xylem template for a plant used as a flavouring in cacao drinks. However, the plant was incorrectly identified in the literature as Pimenta dioica (L.) Merr. (common name: Allspice) based on a common name and aromatic plant quality – not from a botanical voucher specimen. Pimenta dioica wood does not have a cross shape visible in the xylem but a unique character visible after a cross section of T. guatemalensis, is the xylem's cross shape organization. Wood of T. guatemalensis' also has an "allspice" aroma. Tynanthus guatemalensis is most likely the true botanical template behind the ancient Maya k’an glyph and this finding would show the continuity of use of this medicinal plant from ancient to modern times. Vaccinium was selected for an in depth phytochemical analysis using modern metabolomic methods. Nuclear magnetic resonance (1H NMR) was used to evaluate leaf extract spectra to provide information on (1) the taxonomic identity and (2) quantities of bioactive metabolites across multiple sites. Spectra clearly differentiated leaf samples of V. angustifolium, V. boreale, V. corymbosum, V. macrocarpon, V. myrtilloides, V. myrtillus, V. ovalifolium, and V. uliginosum according to generic, subgeneric, specific, phenotypic circumscriptions. Quantification of chlorogenic acid and hyperoside were replicated with a method that is highly reproducible across multiple sites with different NMR equipment. This methodology provides an important new approach to taxonomy and quality control for plants and natural health products.