The aim of this project is to investigate genetic mechanisms of early development of vertebrate embryos using model fish species. Zebrafish (Danio rerio) and medaka (Orizias latipes) have been used extensively for molecular genetics and developmental biology studies because these fish produce many eggs, which can be manipulated from the 1 cell stage and are ideally suited for analysing gene expression, function, and embryonic phenotypes. These species have already been extensively used to generate many mutants which show clear phenotypes during early embryonic development. The development of other model species for mutant screening and analyses is likely to provide scope to analyse gene function from uncharacterised/under-characterised genes. Therefore we have developed and tested a small number of early developmental mutants from the mangrove killifish (Kryptolebias marmoratus). To achieve my aim, embryos from zebrafish, medaka and the mangrove killifish have been used as models to study gene function and understand the molecular mechanisms for early patterning genes. We focused in particular on development of neural ectoderm and non-neural ectoderm (epidermis) and anterior-posterior patterning (head, trunk and tail development). As different model animals have different advantages, we used these model animals for different purposes. Zebrafish and medaka were used with chemical treatment (specific inhibitors of target genes) and morpholino analyses because they give many synchronized eggs every morning allowing highly replicated analyses. On the other hand, the mangrove killifish were used for developing and testing novel mutants and associated loss (or gain) of gene function. Firstly, zebrafish was used to study maternal fibroblast growth factor (FGF) signaling at pre-maternal zygotic transition (Pre-MZT) and consequent neural induction at the gastrula stage (Chapter 3). This study found the important role of acquiring maternal FGF signaling in stem cells to achieve neural induction during the zygotic gene expression stage. An FGF signaling inhibitor SU5402 was tested using RNA–seq, ATAC-seq, in.situ hybridization and immunohistochemistry methods. Through these techniques, we found that the maternal FGF signaling provides competence to the ectodermal stem cells for neural induction possibly via epigenetic modification of histone trimethylation. To examine the role of a specific FGF molecule (FGF2), gene knockdown was conducted to study fgf2 gene function during early development in zebrafish (Chapter 4). In situ hybridization and immunostaining with tissue-specific markers at the gastrula stage were used to discover a novel role for fgf2 in development of the epidermis. The final stage of my project involved characterization of mutations underlying two mutant phenotypes (short tail/stl and ball tail/stl), that exhibit defects in tail development using the self-fertilizing mangrove killifish (Chapter 5). Using a small scale RNA-seq, the mutated genes responsible for the stl and btl mutations were instantly identified as noto and msgn1 respectively. The mutant phenotype was phenocopied by morpholino injections in medaka. This study revealed crucial roles of the two genes in tail bud development. Defects of these genes affected the motility of progenitor cells in the tail bud by suppressing cell translocation to the axial mesoderm in the noto mutation and to the paraxial mesoderm in the msgn1 mutation. The study demonstrated similarity of gene function and redundancy in the mangrove killifish and medaka that is different from the function of these genes in zebrafish, revealing the importance of research on different model animals to fully characterise the gene function. From these data, it can be considered that mangrove killifish is very powerful model for mutation screening, suggesting that this animal model can be applied in various genetic studies alongside or in addition to other vertebrate models.

Parthenogenetic development (PD) in Chinese Painted quail decreases hatchability and increases early embryonic mortality. The objectives of this study were to determine if PD alters egg albumen ions, gases, and pH (virgin and mated hens) as well as the success of subsequent fertilization in mated quail and if egg storage and incubation temperature increase PD. In virgin hens, PD altered albumen characteristics over incubation. In fact, albumen from mated and virgin hens exhibiting PD showed similar albumen characteristics, and these characteristics were similar to early dead embryos in mated hens. Also, mated hens selected for parthenogenesis had less sperm holes in the perivitelline membrane and a higher percentage of eggs without holes as compared to birds not selected for parthenogenesis. Increasing storage and incubational temperature increased PD and parthenogen size. In conclusion, PD alters egg albumen characteristics, decreases fertility, and can be affected by storage and incubation temperatures.

An approach is developed for determining respiratory values of ovules and embryos of Ginkgo biloba L. An analysis of respiratory drift is supplemented by secondary experiments on factors influencing respiration as affecting growth. / Thesis / Master of Science (MS)

No description available.

During the process of spermatogenesis, histones are replaced by protamines, basic proteins enabling transmission of DNA to the oocyte during fertilization. In mouse sperm, there is only 1% of remaining histones whose N-terminal tails contain post-translationally modified residues. In this study, I was interested in contribution of paternal histone H4 acetylated on lysine K12 residues (H4K12ac) that is present in mature sperm head in remaining nucleosomes. Physiologically, H4K12ac has an important role in transcription factor accumulation and in regulation of gene expression. The presence and abundance of H4K12ac modification in various pronuclei stages of 1-cell embryo and parthenotes were assessed by imunnoflourescent detection with utilization of anti-H4K12ac antibody. Altogether, the paternal pronucleus exhibits a strong acetylation signal on H4K12 since its formation, while in the maternal one, there is a slow continual increase of H4K12ac getting on the same level as paternal pronucleus till the pronuclei fusion. Simultaneously DNA methylation status in both pronuclei was detected. In paternal pronucleus there is a continual decrease in the DNA methylation detectable as a decrease of 5mC and an increase of 5hmC signal. Meanwhile, the maternal pronucleus stays widely methylated. DNA...

There is a growing appreciation that eukaryotic genomes are transcribed into numerous, previously undetected - and thus uncharacterized regulatory long non-coding RNAs (lncRNAs). Recent studies are primarily focused on lncRNAs transcribed from intergenic regions and enhancers, leaving antisense lncRNAs the least studied group of lncRNAs. At the same time, antisense transcription occurs in up to 74 % of human gene loci, frequently - from the opposite strand of genes encoding proteins involved in regulation of transcription. Here, we identified HIPSTAR (Heterogeneously expressed from the Intronic Plus Strand of the TFAP2A-locus RNA), a novel conserved lncRNA that is transcribed antisense to the TFAP2A gene. Unlike previously reported antisense lncRNAs, HIPSTR expression does not correlate with the expression of its antisense counterpart. Although HIPSTAR and TFAP2A are co-expressed in in vitro derived neural crest and trophoblast cells, only HIPSTAR and not TFAP2A is specifically expressed in a subset of cells within 8-cell- and morula-stage human embryos. We show that, similar to HIPSTAR, in the individual cells of developing human embryos or of stable cell lines the expression of lncRNAs is more highly heterogeneous than the expression of mRNAs. Finally, we demonstrate that HIPSTAR depletion in HEK293 and H1BP, a human embryonic stem cell line, predominantly affects the expression levels of genes involved in early organismal development and cell differentiation. Together, we show that expression of HIPSTAR and hundreds other lncRNAs is highly heterogeneous in human embryos and cell lines. We use HIPSTAR to exemplify the functional relevance of lncRNAs with heterogeneous and developmental stage-specific expression patterns. / Tem sido cada vez mais reconhecido que a transcrição dos genomas eucarióticos produz múltiplos transcritos novos, anteriormente não detectados e ainda não caracterizados, sendo que a maioria é constituida de RNAs não-codificantes longos (lncRNAs) regulatórios. Estudos recentes estão focados principalmente nos lncRNAs transcritos de regiões intergênicas e enhancers; assim, o grupo dos lncRNAs antisenso permanece o menos estudado de todos. Ao mesmo tempo, a transcrição antisenso ocorre em até 74% dos loci de genes humanos, frequentemente - a partir da fita oposta de genes que codificam proteínas envolvidas na regulação da transcrição. No presente trabalho, nós identificamos HIPSTR (Heterogeneously expressed from the Intronic Plus Strand of the TFAP2A-locus RNA), um lncRNA novo conservado que é transcrito a partir da fita antisenso do gene TFAP2A. Ao contrário do anteriormente relatado para os lncRNAs antisenso, a expressão de HIPSTR não está correlacionada com a expressão do gene da fita oposta. HIPSTR e TFAP2A são co-expressos em células da crista neural e em trofoblastos derivadas in vitro, mas somente HIPSTR e não TFAP2A está especificamente expresso num subconjunto de células de embriões humanos nos estágios de 8-células e mórula. Mostramos que, semelhante a HIPSTR, a expressão de lncRNAs é mais altamente heterogênea que a expressão de mRNAs em células individuais de embriões humanos em desenvolvimento ou em linhagens estáveis de células. Finalmente, nós demonstramos que a depleção de HIPSTAR em células HEK293 e H1BP, uma linhagem de células tronco embrionárias humanas, afeta predominantemente os níveis de genes envolvidos no início do desenvolvimento do organismo e na diferenciação de células. No conjunto, nós mostramos que a expressão de HIPSTR e de centenas de outros lncRNAs é altamente heterogênea em embriões humanos e linhagens celulares. Usamos HIPSTR para exemplificar a relevância funcional de lncRNAs com padrões de expressão heterogêneos e estágio-de-desenvolvimento específicos.

There is a growing appreciation that eukaryotic genomes are transcribed into numerous, previously undetected - and thus uncharacterized regulatory long non-coding RNAs (lncRNAs). Recent studies are primarily focused on lncRNAs transcribed from intergenic regions and enhancers, leaving antisense lncRNAs the least studied group of lncRNAs. At the same time, antisense transcription occurs in up to 74 % of human gene loci, frequently - from the opposite strand of genes encoding proteins involved in regulation of transcription. Here, we identified HIPSTAR (Heterogeneously expressed from the Intronic Plus Strand of the TFAP2A-locus RNA), a novel conserved lncRNA that is transcribed antisense to the TFAP2A gene. Unlike previously reported antisense lncRNAs, HIPSTR expression does not correlate with the expression of its antisense counterpart. Although HIPSTAR and TFAP2A are co-expressed in in vitro derived neural crest and trophoblast cells, only HIPSTAR and not TFAP2A is specifically expressed in a subset of cells within 8-cell- and morula-stage human embryos. We show that, similar to HIPSTAR, in the individual cells of developing human embryos or of stable cell lines the expression of lncRNAs is more highly heterogeneous than the expression of mRNAs. Finally, we demonstrate that HIPSTAR depletion in HEK293 and H1BP, a human embryonic stem cell line, predominantly affects the expression levels of genes involved in early organismal development and cell differentiation. Together, we show that expression of HIPSTAR and hundreds other lncRNAs is highly heterogeneous in human embryos and cell lines. We use HIPSTAR to exemplify the functional relevance of lncRNAs with heterogeneous and developmental stage-specific expression patterns. / Tem sido cada vez mais reconhecido que a transcrição dos genomas eucarióticos produz múltiplos transcritos novos, anteriormente não detectados e ainda não caracterizados, sendo que a maioria é constituida de RNAs não-codificantes longos (lncRNAs) regulatórios. Estudos recentes estão focados principalmente nos lncRNAs transcritos de regiões intergênicas e enhancers; assim, o grupo dos lncRNAs antisenso permanece o menos estudado de todos. Ao mesmo tempo, a transcrição antisenso ocorre em até 74% dos loci de genes humanos, frequentemente - a partir da fita oposta de genes que codificam proteínas envolvidas na regulação da transcrição. No presente trabalho, nós identificamos HIPSTR (Heterogeneously expressed from the Intronic Plus Strand of the TFAP2A-locus RNA), um lncRNA novo conservado que é transcrito a partir da fita antisenso do gene TFAP2A. Ao contrário do anteriormente relatado para os lncRNAs antisenso, a expressão de HIPSTR não está correlacionada com a expressão do gene da fita oposta. HIPSTR e TFAP2A são co-expressos em células da crista neural e em trofoblastos derivadas in vitro, mas somente HIPSTR e não TFAP2A está especificamente expresso num subconjunto de células de embriões humanos nos estágios de 8-células e mórula. Mostramos que, semelhante a HIPSTR, a expressão de lncRNAs é mais altamente heterogênea que a expressão de mRNAs em células individuais de embriões humanos em desenvolvimento ou em linhagens estáveis de células. Finalmente, nós demonstramos que a depleção de HIPSTAR em células HEK293 e H1BP, uma linhagem de células tronco embrionárias humanas, afeta predominantemente os níveis de genes envolvidos no início do desenvolvimento do organismo e na diferenciação de células. No conjunto, nós mostramos que a expressão de HIPSTR e de centenas de outros lncRNAs é altamente heterogênea em embriões humanos e linhagens celulares. Usamos HIPSTR para exemplificar a relevância funcional de lncRNAs com padrões de expressão heterogêneos e estágio-de-desenvolvimento específicos.

The intracellular sperm injection (ICSI) technique is a very effective tool for the fertilization research. In the newly established laboratory at the Faculty of Science of the Charles University it was necessary to introduce this method and define the early developmental potential of fertilized oocytes. After fertilization oocytes were incubated to the blastocyst stage with a success comparable with other laboratories (17%). The ubiquitin-proteasome system which plays a major role in a protein degradation within cells is involved in a regulatory mechanism of sperm maturation. It is also responsible for a penetration of a vitelline membrane. In these processes ubiquitin residues are localized extracellulary. High level of sperm ubiquitination correlates with their low quality. Hypotetically it can be expected that the ubiqutination of impaired sperm cells can be used as a negative marker for their recognition and degradation by 26S proteasome complex localized. Experiments in this diploma thesis were designed based on the hypothesis that the executive part of the selective mechanism is the 26S proteasome. Therefore the effect of MG132 peptide inhibition of the 20S proteasome on the pronuclei formation and subsequent early embryonic development after ICSI was studied. Inhibition of 20S proteasome...

Die vorliegende Studie über den Alterseinfluß bei der Honigbiene (Apis mellifera) besteht aus drei Hauptteilen. Der erste Teil befasst sich mit den Charakteristiken des Spermathekeninhalts alter und junger Bienenköniginnen. Im zweiten Teil geht es um die Auswirkungen des maternalen Alters auf die embryonale Mortalität und die juvenile Entwicklung der Brut. Im dritten Studienteil werden die Auswirkungen der Verweildauer in der Spermatheca auf die embryonale Mortalität, Embryonenqualität und Larvenentwicklung der Nachkommen untersucht. Der Samen aus den Spermatheken älterer Bienen weist andere Bewegungsmuster, eine geringere Geschwindigkeit und eine anderen Enzymaktivität auf als der Samen, der aus den Spermatheken junger Königinnen gewonnen wurde. Ein altersbedingtes Nachlassen der Fertlität ist daraus zu erklären. Im Laufe von zwei Jahren wurde die embryonale Entwicklung und das Larvenwachstum von Nachkommen unterschiedlich alter Königinnen untersucht (2-jährige bis frisch begattete Königinnen). Ältere Königinnen legten kleinere Eier und deren Nachkommen zeigten eine signifikant höhere Mortalitätsrate und kleinere Entwicklungsstadien als die Nachkommen jüngerer Königinnen. In einer weiteren Studie wurde die embryonale Mortalität und die Embryonalentwicklung von Nachkommen, die aus älteren Samen entstanden, untersucht. Dabei wurde der Samen aus den Spermatheken von alten und jungen begatteten Königin entnommen und jungfräuliche Königinnen übertragen. um das Alter der Königin auszugleichen. Bei der Untersuchung wurde eine höhere embryonale Mortalität und generell, zu gewissen Entwicklungszeiten signifikant, kleine Entwicklungsstadien bei den Königinnen festgestellt, die mit dem älteren Samen befruchtet wurden. Der relative Anteil an früher und später embryonaler Mortalität war auch zwischen den beiden Spermien-Alterlassen signifikant unterschiedlich. Die insgesamt hohe embryonale Mortalität auch in der Kontrollgruppe (Königinnen besamt mit Sperma aus den Spermathecen junger Königinnen) belegt, dass die Methode der Samenextraktion und Reinsemination einen großen Einfluß auf die Embryonalentwicklung hatte. Auch das Phänomen „leerer Eier“, welches in beiden Gruppen in gleicher Frequenz vorgefunden wurde, ist möglicherweise durch diese Methode bedingt. / This study on the honey bee, Apis mellifera, consists of three major parts. The first involves the characteristics of the spermathecal content of old and young honey bee queen. The second examines maternal age effects on embryonic mortality and juvenile development of offspring in the honey bee. The third investigates on the impact of semen age on early embryonic mortality, embryo quality and larvae development in the honey bee. Semen collected from the spermatheca of old queen bees show different sperm movement patterns and slower speed than sperm from the spermathecae of young queens. This ability is possibly related to different enzyme activities and metabolisms found in the spermathecal contents of differently aged queens. The embryonic development and larval growth rate have been examined with regard to queen honey bees of different ages (2-year-old to freshly mated queens) during two years (2005 and 2006). Early embryonic mortality “EEM” has been found to be higher within the eggs from old queens than in those from younger queens. Egg volume, consequently embryo size, reduces as queen’s age. A further investigates embryonic mortality in offspring originating from older semen. This has been carried out by extracting the semen from the spermatheca of an old or/and young mated queen and re-inseminating it into a virgin queen, in order to adjust for queen age. The investigation show higher embryonic mortality in the offspring from virgin queens inseminated with semen extracted from older queens than with semen from younger queens. The relative percentage of early and late embryonic mortality within the groups was different between queens re-inseminated with aged semen. High embryonic mortality in the control semen ages may be affected by the method of extracting from semen out of the spermatheca and re-inseminating it into a virgin queen. Empty egg phenomenon, which has been found in both groups, may be related to this technique