Nature creates high performance materials under modest conditions, i.e., neutral pH and ambient temperature and pressure. One of the most significant materials is the plant cell wall. The plant cell wall is a composite of oriented cellulose microfibrils reinforcing a lignin/hemicellulose matrix. In principle, the plant cell wall composite is designed much like a synthetic fiber-reinforced polymer composite. Unlike synthetic composites, the plant cell wall has an excellent combination of high modulus, strength, toughness and low density that originates in the optimal interactions between the biopolymers. Therefore, to produce high performance composites, a unique route may be to mimic a biological system like the plant cell wall. The present work focuses on understanding the thermodynamics of biopolymer assembly to exploit the process in vitro. In our system, we use an already polymerized nanocellulose template and polymerize phenolic monomers on the template using a peroxidase enzyme. In the first part, we have polymerized phenol using horseradish peroxidase (HRP) in the presence of TEMPO-oxidized nanocellulose. Similar to native plant cell wall structures, the polyphenol-nanocellulose composite had intimate mixing of polyphenol and cellulose at the nanoscale with the presence of cellulose promoting a uniquely organized structure. The obtained composite material showed synergy that enhanced the thermal stability, hydrophobicity, and possibly mechanical properties. In the second part, monolignol coniferyl alcohol was polymerized in the presence of nanocellulose by the same procedure. A comparison between the polyphenol composite and poly(coniferyl alcohol) (PCA) composite revealed that the propanyl substitution imparted flexibility to the PCA molecules so that they could bend and form a hollow globule structure to envelope nanocellulose inside. Polyphenol could not do this because of its rigidity. / Master of Science

<p>The use of DNA as a polymeric building material transcends its function in biology and is exciting in bionanotechnology for applications ranging from biosensing, to diagnostics, and to targeted drug delivery. These applications are enabled by DNA’s unique structural and chemical properties, embodied as a directional polyanion that exhibits molecular recognition capabilities. Hence, the efficient and precise synthesis of high molecular weight DNA materials has become key to advance DNA bionanotechnology. Current synthesis methods largely rely on either solid phase chemical synthesis or template-dependent polymerase amplification. The inherent step-by-step fashion of solid phase synthesis limits the length of the resulting DNA to typically less than 150 nucleotides. In contrast, polymerase based enzymatic synthesis methods (e.g., polymerase chain reaction) are not limited by product length, but require a DNA template to guide the synthesis. Furthermore, advanced DNA bionanotechnology requires tailorable structural and self-assembly properties. Current synthesis methods, however, often involve multiple conjugating reactions and extensive purification steps.</p><p>The research described in this dissertation aims to develop a facile method to synthesize high molecular weight, single stranded DNA (or polynucleotide) with versatile functionalities. We exploit the ability of a template-independent DNA polymerase−terminal deoxynucleotidyl transferase (TdT) to catalyze the polymerization of 2’-deoxyribonucleoside 5’-triphosphates (dNTP, monomer) from the 3’-hydroxyl group of an oligodeoxyribonucleotide (initiator). We termed this enzymatic synthesis method: TdT catalyzed enzymatic polymerization, or TcEP.</p><p>Specifically, this dissertation is structured to address three specific research aims. With the objective to generate high molecular weight polynucleotides, Specific Aim 1 studies the reaction kinetics of TcEP by investigating the polymerization of 2’-deoxythymidine 5’-triphosphates (monomer) from the 3’-hydroxyl group of oligodeoxyribothymidine (initiator) using in situ 1H NMR and fluorescent gel electrophoresis. We found that TcEP kinetics follows the “living” chain-growth polycondensation mechanism, and like in “living” polymerizations, the molecular weight of the final product is determined by the starting molar ratio of monomer to initiator. The distribution of the molecular weight is crucially influenced by the molar ratio of initiator to TdT. We developed a reaction kinetics model that allows us to quantitatively describe the reaction and predict the molecular weight of the reaction products.</p><p>Specific Aim 2 further explores TcEP’s ability to transcend homo-polynucleotide synthesis by varying the choices of initiators and monomers. We investigated the effects of initiator length and sequence on TcEP, and found that the minimum length of an effective initiator should be 10 nucleotides and that the formation of secondary structures close to the 3’-hydroxyl group can impede the polymerization reaction. We also demonstrated TcEP’s capacity to incorporate a wide range of unnatural dNTPs into the growing chain, such as, hydrophobic fluorescent dNTP and fluoro modified dNTP. By harnessing the encoded nucleotide sequence of an initiator and the chemical diversity of monomers, TcEP enables us to introduce molecular recognition capabilities and chemical functionalities on the 5’-terminus and 3’-terminus, respectively.</p><p>Building on TcEP’s synthesis capacities, in Specific Aim 3 we invented a two-step strategy to synthesize diblock amphiphilic polynucleotides, in which the first, hydrophilic block serves as a macro-initiator for the growth of the second block, comprised of natural and/or unnatural nucleotides. By tuning the hydrophilic length, we synthesized the amphiphilic diblock polynucleotides that can self-assemble into micellar structures ranging from star-like to crew-cut morphologies. The observed self-assembly behaviors agree with predictions from dissipative particle dynamics simulations as well as scaling law for polyelectrolyte block copolymers.</p><p>In summary, we developed an enzymatic synthesis method (i.e., TcEP) that enables the facile synthesis of high molecular weight polynucleotides with low polydispersity. Although we can control the nucleotide sequence only to a limited extent, TcEP offers a method to integrate an oligodeoxyribonucleotide with specific sequence at the 5’-terminus and to incorporate functional groups along the growing chains simultaneously. Additionally, we used TcEP to synthesize amphiphilic polynucleotides that display self-assemble ability. We anticipate that our facile synthesis method will not only advance molecular biology, but also invigorate materials science and bionanotechnology.</p> / Dissertation

Conventional free-radical miniemulsion polymerization has been well studied since early 1970s. Conventional free-radical miniemulsion polymerizations have inherent limitations associated with uncontrolled free-radical polymerization mechanism. The goal of this work is to develop a variety of unconventional miniemulsion polymerization techniques by applying new polymerization techniques (typically in solution or bulk) to miniemulsion systems to overcome their inherent limitations and extend the application of free-radical miniemulsion polymerization. This work focused on the exploration of kinetic and mechanistic aspects of unconventional miniemulsion polymerizations. First, enzyme initiated free-radical miniemulsion polymerization, in contrast with those conventional chemical initiated miniemulsion polymerization, is demonstrated for the first time as an answer to the challenges associated with using the hydrophobic of vinyl monomers in aqueous enzymatic reactions. A procedure for enzyme initiated free-radical miniemulsion polymerization was formulated and stable poly(styrene) latexes were successfully synthesized. The kinetics of enzyme initiated free-radical miniemulsion polymerization and the effect of reaction conditions on the polymerization was elucidated. Second, RAFT miniemulsion polymerization of hydrophobic monomers was performed in CSTR trains and the transient states, previously identified by others in our group, were elucidated. Next, RAFT miniemulsion polymerization of a partially water soluble monomer was studied. RAFT miniemulsion polymerizations of gamma-methyl-alpha-methylene-gamma-butyrolactone, a partially water soluble lactone monomer derived from renewable sources, was successfully formulated. Homogeneous nucleation was found to play an important role in the free-radical "miniemulsion" homopolymerization of MeMBL. By using styrene as a comonomer, the RAFT miniemulsion polymerizations of MeMBL and styrene were well controlled and narrowly distributed copolymers of MeMBL/styrene were produced. Following the study of the partially water monomer, RAFT inverse miniemulsion polymerization was proposed for the polymerization of hydrophilic monomers. The kinetics of RAFT inverse miniemulsion polymerization of acrylamide exhibited the typical behavior of controlled polymerizations up to high conversions. The effects of reaction parameters on the polymerization rate and particle size were investigated. The dominant locus of radical generation for particle nucleation and the fate of desorbed monomeric radicals in inverse miniemulsion polymerizations were evaluated. Finally in this work, conclusions and implications are presented and ideas for future work are suggested.

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第21733号 / 工博第4550号 / 新制||工||1709(附属図書館) / 京都大学大学院工学研究科材料化学専攻 / (主査)教授 木村 俊作, 教授 瀧川 敏算, 教授 秋吉 一成 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM

This thesis describes strategies for and examples ofcellulose fiber modification.The ability of an engineered biocatalyst, acellulose-binding module fused to theCandida antarcticalipase B, to catalyze ring-openingpolymerization of e-caprolactone in close proximity tocellulose fiber surfaces was explored. The water content in thesystem was found to regulate the polymer molecular weight,whereas the temperature primarily influenced the reaction rate.The hydrophobicity of the cellulose sample increased as aresult of the presence of surface-deposited polyester. A two-step enzymatic method was also investigated. Here,Candida antarctica lipase B catalyzed the acylation ofxyloglucan oligosaccharides.The modified carbohydrates werethen incorporated into longer xyloglucan molecules through theaction of a xyloglucan endotransglycosylase. The modifiedxyloglucan chains were finally deposited on a cellulosesubstrate. The action ofCandida antarcticalipase B was further investigated inthe copolymerization of e-caprolactone and D,L-lactide.Copolymerizations with different e-caprolactone-to-D,L-lactideratios were carried out. Initially, the polymerization wasslowed by the presence of D,L-lactide. During this stage,D,L-lactide was consumed more rapidly than ε-caprolactoneand the incorporation occurred dimer-wise with regard to thelactic acid units. Morphological studies on wood fibers were conducted using asol-gel mineralization method. The replicas produced werestudied, without additional sample preparation, by electronmicroscopy and nitrogen adsorption. Information concerning thestructure and accessibility of the porous fiber wall wasobtained. Studies of never-dried kraft pulp casts revealedmicro-cavities and cellulose fibrils with mean widths of 4.7(±2) and 3.6 (±1) nm, respectively. Finally, cationic catalysis by simple carboxylic acids wasstudied. L-Lactic acid was shown to catalyze the ring-openingpolymerization of ε-caprolactone in bulk at 120 °C.The reaction was initiated with methylß-D-glucopyranoside, sucrose or raffinose, which resultedin carbohydrate-functionalized polyesters. The regioselectivityof the acylation was well in agreement with the correspondinglipase-catalyzed reaction. The polymerization was alsoinitiated with a hexahydroxy-functional compound, whichresulted in a dendrimer-like star polymer. The L-lactic acidwas readily recycled, which made consecutive reactions usingthe same catalyst possible. Keywords:Candida antarcticalipase B, cationic catalysis,cellulose-binding module, dendrimer, enzymatic polymerization,fiber modification, silica-cast replica, sol-gelmineralization, organocatalysis, xyloglucanendotransglycosylase

<p>This thesis describes strategies for and examples ofcellulose fiber modification.The ability of an engineered biocatalyst, acellulose-binding module fused to the<i>Candida antarctica</i>lipase B, to catalyze ring-openingpolymerization of e-caprolactone in close proximity tocellulose fiber surfaces was explored. The water content in thesystem was found to regulate the polymer molecular weight,whereas the temperature primarily influenced the reaction rate.The hydrophobicity of the cellulose sample increased as aresult of the presence of surface-deposited polyester.</p><p>A two-step enzymatic method was also investigated. Here,Candida antarctica lipase B catalyzed the acylation ofxyloglucan oligosaccharides.The modified carbohydrates werethen incorporated into longer xyloglucan molecules through theaction of a xyloglucan endotransglycosylase. The modifiedxyloglucan chains were finally deposited on a cellulosesubstrate.</p><p>The action of<i>Candida antarctica</i>lipase B was further investigated inthe copolymerization of e-caprolactone and D,L-lactide.Copolymerizations with different e-caprolactone-to-D,L-lactideratios were carried out. Initially, the polymerization wasslowed by the presence of D,L-lactide. During this stage,D,L-lactide was consumed more rapidly than ε-caprolactoneand the incorporation occurred dimer-wise with regard to thelactic acid units.</p><p>Morphological studies on wood fibers were conducted using asol-gel mineralization method. The replicas produced werestudied, without additional sample preparation, by electronmicroscopy and nitrogen adsorption. Information concerning thestructure and accessibility of the porous fiber wall wasobtained. Studies of never-dried kraft pulp casts revealedmicro-cavities and cellulose fibrils with mean widths of 4.7(±2) and 3.6 (±1) nm, respectively.</p><p>Finally, cationic catalysis by simple carboxylic acids wasstudied. L-Lactic acid was shown to catalyze the ring-openingpolymerization of ε-caprolactone in bulk at 120 °C.The reaction was initiated with methylß-D-glucopyranoside, sucrose or raffinose, which resultedin carbohydrate-functionalized polyesters. The regioselectivityof the acylation was well in agreement with the correspondinglipase-catalyzed reaction. The polymerization was alsoinitiated with a hexahydroxy-functional compound, whichresulted in a dendrimer-like star polymer. The L-lactic acidwas readily recycled, which made consecutive reactions usingthe same catalyst possible.</p><p><b>Keywords:</b><i>Candida antarctica</i>lipase B, cationic catalysis,cellulose-binding module, dendrimer, enzymatic polymerization,fiber modification, silica-cast replica, sol-gelmineralization, organocatalysis, xyloglucanendotransglycosylase</p>

Le but du projet est de synthétiser un film de polymères à double mémoire de formes avec une sensibilité à la lumière ainsi qu’à un champ magnétique. Afin de rendre le polymère sensible à ces stimuli, des nanoparticules d’oxyde de fer (II,III) furent enrobées d’une couche de polydopamine. Par après, du polycaprolactone et du poly(caprolactone-co-pentadecalactone) furent synthétisés par polymérisation enzymatique à ouverture de cycle. Les polymères furent méthacrylés en fin de chaînes, remplaçant le groupe alcool par une double liaison qui est par la suite utilisée pour une réticulation. Les films de polymères étaient obtenus en combinant les nanoparticules et les polymères via une réaction click de type « thiol-ène ». Des films avec une teneur de nanoparticules de 0 à 1 pour cent en poids furent ainsi synthétisés. L’alternance entre deux formes était possible grâce à deux phénomènes physiques : l’élongation induite par cristallisation et la contraction induite par la fusion. Ces phénomènes sont causés par la fusion et la cristallisation du polycaprolactone, tandis que le poly(caprolactone-co-pentadécalactone) restait maintenu dans un état solide cristallin sur la gamme de températures étudiée. Les films de polymères changeaient de forme en étant chauffés par exposition à la lumière. Les films avec nanoparticules se contractaient quand ils étaient exposés à la lumière et retournaient à leur forme originale quand la lumière était éteinte. Le chauffage par induction avec un champ magnétique alternatif fut aussi un succès. Les films avec nanoparticules se contractaient à l’intérieur d’une bobine de cuivre avec un champ magnétique présent lorsqu’un courant électrique circulait dans la bobine. Les films retournaient à leur forme d’origine lorsque le champ magnétique était coupé. Il fut observé que plus la teneur en nanoparticules au sein du film de polymères était élevée, le plus court le temps de réponse était avant qu’un mouvement de contraction ne soit observé. Aucun changement de volume ne fut observé en chauffant des échantillons de films de polymères de 20 à 60 °C, confirmant, dans les conditions actuelles d’évaluation, que la contraction induite par la fusion et que l’élongation induite par cristallisation se produisent sans causer un changement de volume du film. / The project goal is to synthesize a two-way shape memory polymer that is both magnetically and light responsive. To make the polymer responsive to these stimuli, iron oxide (II, III) nanoparticles with a polydopamine coating were first synthesized. Afterwards, polycaprolactone and poly(caprolactone-co-pentadecalactone) were synthesized by enzymatic ring-opening polymerization. The polymer was then methacrylated at the terminal positions, replacing the alcohol with a double bond which was then used for crosslinking. Polymer films were prepared by combining the nanoparticles and the polymer by a “thiol-ene” click reaction. Films containing from 0 to 1 weight percent of nanoparticles were synthesized. Switching between the two shapes was possible by two physical phenomena: crystallization induced elongation and melting induced contraction. These are caused by the fusion and crystallization of the polycaprolactone network, while the poly(caprolactone-co-pentadecalactone) is consistently maintained in its crystalline solid state in a specific temperature range. The polymer films changed shapes due to heating when exposed to light. Films with nanoparticles contracted when exposed to light and they returned to their original form when the light was turned off. Induction heating with an alternating magnetic field was also successful. The polymer film with magnetic nanoparticles contracted inside a copper coil when the magnetic field was generated by applying electric current to the coil. The film returned to its original shape when the magnetic field was turned off. It was found that the higher the content of nanoparticles in the polymer filler, the shorter the response time was before a contraction movement was observed. No change in the polymer volume during heating of a film sample from 20 to 60 °C was observed, confirming that melting induced contraction and crystallization induced elongation occurred without change in volume under conditions examined.

Les polyesters aliphatiques, comme le poly(acide malique) et ses dérivés, sont une famille de polymères aux propriétés de bio(comptabilité) et de bio(dégradabilité) remarquables, qui en font des candidats de choix pour l'élaboration de systèmes de vectorisation de principes actifs. Généralement, ces polymères sont synthétisés via des réactions de polymérisation utilisant des amorceurs, voir des catalyseurs, organiques, organométalliques ou métalliques. La présence de ces molécules, même à l'état de traces, peut être à l'origine d'une toxicité non souhaitée. Par conséquent, l'utilisation de biocatalyseurs, comme les lipases, se développe pour apporter une solution à cet inconvénient. Cependant, cette voie de synthèse enzymatique fait face à d'autres problèmes, tels qu'une polymérisation moins bien maîtrisée et des polymères de masses molaires faibles. Cette thèse a donc pour objectif de mettre au point une voie de polymérisation du malolactonate de benzyle utilisant la lipase de pancréas de porc (PPL) comme amorceur. Dans un premier temps, nous avons optimisé certains paramètres réactionnels permettant d'obtenir des poly(malate de benzyle) , PMLABe, de masses molaires suffisamment élevées pour que ces polymères puissent être utilisés dans la formulation de vecteurs de principes actifs, grâce à l'utilisation et l'extrapolation d'un plan d'expérience. Nous nous sommes ensuite intéressés à la compréhension du mécanisme réactionnel de la polymérisation enzymatique du malolactonate de benzyle, une β-lactone β-substituée. Les différentes études menées ont permis d'approfondir notre connaissance dans ce domaine. Deux mécanismes ont été proposés et des expériences sont en cours pour confirmer l'un d'entre eux. Finalement, comme l'objectif initial est de proposer une méthode de synthèse de dérivés du PMLA plus biocompatibles conduisant à des polymères sans résidus d'amorceurs chimiques toxiques, nous avons comparé les activités biologiques de nanoparticules préparées à partir de PMLABe synthétisés par voie chimique et par voie enzymatique. Pour cela, nous avons mesuré la captation de ces nanoparticules, encapsulant une sonde de fluorescence, par des cellules hépatiques HepaRG. Puis, nous avons évalué la toxicité aiguë et la toxicité chronique de ces nanoparticules vis-à-vis des cellules HepaRG. Ces études ont permis de mettre en évidence certaines propriétés des nanoparticules ayant une influence sur la survie cellulaire et le métabolisme des cellules HepaRG. De la compréhension théorique aux applications potentielles, cette thèse apporte des connaissances sur la polymérisation enzymatique des lactones substituées, un domaine peu décrit dans la littérature. / Aliphatic polyesters, like poly(malic acid)and its derivatives, are a family of polymers with outstanding properties, such as bio(degradability) and bio(compatibility). Therefore, these polyesters can be considered as excellent candidates for the design of drug carriers. These kinds of polymers are usually synthesized thanks to polymerization reactions using organic, organometallic or metallic initiators or catalysts. The presence of such molecules, even in trace amounts, can cause undesired toxicities. Therefore, the use of biocatalysts, like lipases, is attracting more and more interest and research work to circumvent this problem. However, this enzymatic polymerization method has to face to other issues, such as a lower controlled of the polymerization process and polymers with lower molar masses. Therefore, this PhD research work aimed at setting up the enzymatic polymerization of benzyl malolactonate, using porcine pancreatic lipase (PPL). Firstly, we have optimized some reactional parameters allowing to obtain poly(benzyl malate), PMLABe, with molar masses adapted to their uses for the design of drug carriers, thanks to a Design of Experiments (DoE) and its extrapolation. We were then interested by the comprehension of the enzymatic polymerization mechanism of the benzyl malolactonate. The different studies we carried out allowed us to deepen our knowledges of such enzymatic polymerization. Two non-canonical mechanisms were proposed and further experiments are in progress to confirm the one which is the more probable. Finally, because our initial goal was to propose a more biocompatible polymerization method to obtain PMLABe free of traces of chemical initiator, we compared biologic activities of different nanoparticles prepared from PMLABe synthesized using chemical or enzymatic pathway. For that, we have first measured the uptake of these nanoparticles encapsulating a fluorescent dye, by the hepatic cells HepaRG. Then, we have studied the acute and chronic toxicity of the nanoparticles on the HepaRG cells. Results of these studies have highlighted that certain properties of the nanoparticles and/or of the polymers which constituted them have an influence on the cells viability and on the cells metabolism. From the theoretical mechanism to the probable applications, this thesis brings knowledge about the enzymatic polymerization of substituted lactone, a field poorly described in the literature.