Extracellular matrix (ECM) is a key component and regulator of many biological tissues. Several cardiovascular pathologies are associated with significant changes in the composition of the matrix. Better understanding of these pathologies and the physiological phenomenon behind their development depends on reliable methods that can measure and characterize ECM content and structure. In this dissertation, infrared spectroscopic methodologies are developed to study the changes in extracellular matrix of cardiovascular tissue in two cardiovascular pathologies; myocardial infarction and abdominal aortic aneurysm. The specific aims of this dissertation were: 1. To develop a Fourier transform infrared imaging spectroscopy (FT-IRIS) methodology for creating distribution maps of collagen in remodeled cardiac tissue sections after myocardial infarction, and to quantitatively compare maps created by FT-IRIS with conventional staining techniques. 2. To develop an FT-IRIS method to assess elastin and collagen composition in the aortic wall. This will be accomplished using ex vivo animal aorta samples, where the primary ECM components of the wall will be systematically enzymatically degraded. 3. To apply the newly developed FTIR imaging methodology to evaluate changes in the primary ECM components (collagen and elastin) in the wall of human AAA tissues. The infrared absorbance band centered at 1338 cm-1, was used to map collagen deposition across heart tissue sections of a rat model of myocardial infarction, and was correlated strongly in the size of the scar (R=0.93) and local intensity of collagen deposition (R=0.86). In enzymatically degraded pig aorta samples, as a model of ECM degradation in abdominal aortic aneurysm (AAA), partial least squares (PLS) models were created to predict collagen and elastin content in aorta based on collected FTIR spectra and biochemically measured values. PLS models based on FT-IRIS spectra were able to predict elastin and collagen content of the samples with strong correlations (R2=0.90 and 0.70 respectively). Elastin content prediction from IFOP spectra was successful through a PLS regression model with high correlation (R2=0.81). The PLS regression coefficient from the FT-IRIS models were used to map collagen and elastin human AAA biopsy tissue sections, creating a similar map of each component compared to histologically stained images. The mean value of collagen deposition in each tissue was calculated for 13 pairs of AAA samples where stress had been calculated using finite element modeling. In most pairs with stress values higher than 5 N/m2, collagen content was lower in the sample with higher stress value. Collagen maturity had a weak negative correlation (R=-0.35) with collagen content in these samples. These results confirm that infrared spectroscopy is a powerful tool that can be applied to replace or complement conventional methods such as histology and biochemical analysis to characterize ECM components in cardiovascular tissues. Furthermore, infrared spectroscopy has the potential for translation to a clinical environment to examine ECM changes in aorta in a minimally invasive fashion using fiber optic technology. / Mechanical Engineering

Microsystems are a broad category of engineered technologies in the micro and nano scale that have a diverse range of applications. They are emerging as a powerful tool in the field of biomedical research, drug discovery, as well as clinical diagnostics and prognostics, especially with regards to cancer. One of the major challenges in precision and personalized medicine in cancer lies in the technical difficulties of ex-vivo cell culture and propagation of the limited number of primary cells derived from patients. Therefore, our aims are to 1. Develop a biologically relevant platform for culturing cancer cells and characterize how it influences the cell growth and phenotype compared to conventional 2-dimensional(2D) cell culturing techniques, 2. Isolate secondary metabolites from endophytic fungi and screen them on the platform for potential anticancer properties in a preliminary drug discovery pipeline, 3. Design and develop biosensors for quantifying cell responses in real-time within these systems. Several biomaterial scaffolds with microscale architectures have been utilized for engineering the tumor extracellular matrix, but very few studies have thoroughly characterized the phenotypic changes in their cell models, which is critical for translational applications of biomaterial systems. The overall objective of these studies is to engineer a biomimetic platform for the culture of breast cancer cells in vitro and to quantify and profile their phenotypic changes. In order to do this, we first evaluated a blank-slate matrix consisting of thiolated collagen, hyaluronic acid and heparin, cross-linked chemically via Michael addition reaction using diacrylate functionalized poly (ethylene glycol). The hydrogel network was used with triple-negative breast cancer cells and showed significant changes in characteristics, with cells self-assembling to form a 3D spheroid morphology, with higher viability, and exhibiting significantly lower cell death upon chemotherapy treatment, as well as had a decrease in proliferation. Furthemore, the transcriptomic changes quantified using RNA-Seq and Next-Gen Sequencing showed the dramatic changes in some of the commonly targeted pathways in cancer therapy. Furthermore, we were able to show the importance of our biomimetic platform in the process of drug discovery using fungal endophytes and their secondary metabolites as the source for potential anticancer molecules. Additionally, we developed gold nanoparticle and antibody-based (ICAM1 and CD11b) sensors to quantify cell responses spatiotemporally on our platform. We were able to show quenching of the green fluorescent fluorophores due to the Förster Resonance Energy Transfer mechanism between the fluorophore and the gold nanometal surface. We also observed antigen-dependent recovery of fluorescence and inhibition of energy transfer upon the antibody binding to the cell-surface receptors. Future efforts are directed towards incorporating the hydrogel system with antigen-dependent sensors in a conceptually-designed microfluidic platform to spatiotemporally quantify the expression of surface proteins in various cells of the tumor stroma. This includes the migration,infiltration, and polarization of specific immune cells. This approach will provide further insight into the heterogeneity of cells at the single-cell resolution in defined spaces within the 3D microfluidic platform. / Doctor of Philosophy / Microsystems are a broad category of engineered technologies in the micro and nano scale that have a diverse range of applications. They are emerging as a powerful tool in the field of biomedical research, drug discovery, as well as clinical diagnostics and prognostics, especially with regards to cancer. However, a major challenge in being able to offer personalized medicine to cancer patients comes from the difficulty of growing cells from the patient's tumor biopsy in a laboratory for further screening and analysis. There are also limited resources available for real-time expression of proteins on cell-surfaces, that could be potential biomarkers and targets for treatment. Various natural and synthetic polymers are biocompatible and have been used widely in engineering the tumor extracellular matrix. However, the effect of hydrogels derived from these polymers on the specific tumor cells are not always well characterized. Our studies explore the influence of a biohybrid hydrogel on breast cancer cells and our results show that the microscale architecture of the hydrogel platform works as a suitable scaffold for recapitulating the 3-dimensional(3D) breast tumor microenvironment, and can also be employed in the drug discovery process. Additionally, we developed a nano-scale biosensor to enable the quantification of specific cell-surface proteins in real-time. Ongoing and future efforts are focused on designing and fabricating a microfluidic device with precise control over the design of space and special chambers for cell culture. These will be used for studying interactions of various cells in the tumor microenvironment that influence cancer progression. Integrating these micro-scale systems, including sensors will allow researchers to quantify cell behavior in response to the variable factors they are exposed to, as well as provide insight to answer fundamental questions about cancer biology that are limited by the conventional 2D cell culture systems.

Mechanical interactions of cells with their immediately surrounding extracellular matrix (ECM) is now known to be critical in pathophysiology. For example, during cancer progression, while uncontrollable cell division leads to tumor formation, the subsequent metastatic migration of cells from the primary tumor site to distant parts of the body causes most cancer-related deaths. The metastatic journey requires cells to be able to adopt different shapes and move persistently through the highly fibrous native ECM, thereby requiring significant spatiotemporal reorganization of the cell cytoskeleton. While numerous studies performed on flat 2-dimensional culture platforms and physiological 3D gels have elucidated cytoskeletal reorganization, our understanding on how cells adapt to natural fibrous microenvironments and regulate their behavior in response to specific ECM biophysical cues including fiber size, spacing, alignment and stiffness remains in infancy. Here, we utilize the non -electrospinning Spinneret tunable engineered parameters (STEP) technique to manufacture ECM mimicking suspended fibrous matrices with precisely controlled fiber diameters, network architecture, inter-fiber spacing and structural stiffness to advance our fundamental understanding of how external cues affect cytoskeleton-based cellular forces in 3-distinct morphological processes of the cell cycle starting from division to spreading and migration. Mechanobiological insights from these studies are implemented to deliver intracellular cargo inside cells using electrical fields. Holistically, we conclude that fibrous environments elicit multiple new cell behaviors never before reported. Specifically, our new findings include (i) design of fiber networks regulates actin networks and cell forces to sculpt nuclei in varying shapes: compressed ovals, tear drop, and invaginations, and drive the nuclear translocation of transcription factors like YAP/TAZ. In all these shapes, nuclei remain rupture-free, thus demonstrating the unique adaptability of cells to fibers, (ii) dense crosshatch networks are fertile environments for persistent 1D migration in 3D shapes of rounded nuclei and low density of actin networks, while sparse fiber networks induce 2D random migration in flattened shapes and well-defined actin stress fibers, (iii) actin retraction fiber-based stability regulates mitotic errors. Cells undergoing mitosis on single fibers exhibit significant 3D movement, and those attached to two fibers can have rotated mitotic machinery, both conditions contributing to erroneous division, and (iv) a bi-phasic force response to electroporation that coincides with actin cytoskeleton remodeling. Cells on suspended fibers can withstand higher electric field abuse, which opens opportunities to deliver cargo of varying sizes inside the cell. Taken altogether, our findings provide new mechanobiological understanding of cell-fiber interactions at high spatiotemporal resolution impacting cell migration, division and nuclear mechanics-key behaviors in the study of pathophysiology. / Doctor of Philosophy / Cancer, one of the major pathophysiological conditions, progresses within the living body through spreading of malignant cells from the primary tumor to distant secondary sites, ultimately leading to life-ending outcomes. Such spreading of cancer also known as cancer metastasis requires mechanical interactions of cells with their immediately surrounding microenvironment or the extracellular matrix (ECM). Cells utilize their cytoskeleton, a dynamic internal network of filamentous proteins, to adopt various morphologies, exert mechanical forces and physically remodel their local environment as they navigate through the highly fibrous native ECM. While previous research has elucidated how biochemical factors and bulk matrix properties regulate such cytoskeletal organization and single cell behavior, our understanding of how cells adapt to fibrous environments and respond to local biophysical cues like fiber diameter, spacing, alignment and stiffness remains in infancy. Here we use the non -electrospinning Spinneret tunable engineered parameters (STEP) to generate suspended nanofiber networks of tunable geometric and mechanical properties to mimic the native cellular environment. We discover that cells elongated within these ECM-mimicking environments utilize a unique cytoskeletal caging structure to regulate the shape and response of their nuclei in a fiber -diameter and organization-dependent manner. Additionally, we demonstrate that these elongated cell morphologies often observed during metastatic cancer cell movements, is achievable not only in aligned fibers but can also be induced by dense networks of fibers in a crossing organization. Specifically, such dense crosshatch networks allow cells to migrate persistently at high speeds while cells on sparsely spaced networks demonstrate slower and random movements. As cells elongated during interphase rounded up to undergo division, we find that the underlying fiber-geometry modulates mitotic dynamics through differential levels of actin retraction fiber-mediated stability, leading to significant alterations in orientation of mitotic machinery and mitotic spindle defects. Finally, we utilize these mechanobiological insights on cytoskeletal organization and cell shape control to optimize intracellular delivery of cargo using high-voltage electric fields. We demonstrate suspended cells are capable of withstanding higher electric fields and identify multistage cell contractility recovery dynamics, which correlate with cytoskeletal disruption and reassembly. Taken altogether, our findings provide a comprehensive understanding of the fibrous ECM-mediated regulation of the cytoskeletal organization and its impact in cell migration, division and nuclear mechanics. Knowledge obtained from this study will improve our understanding of cancer metastasis and provide predictive data for in vivo cellular response, essential for cytoskeleton-targeting cancer therapies.

No / This study aimed at examining the biophysical characteristics of human derived keratinocytes (HaCaT) cultured on cholesteryl ester liquid crystals (CELC). CELC was previously shown to improve sensitivity in sensing cell contractions. Characteristics of the cell integrin expressions and presence of extracellular matrix (ECM) proteins on the liquid crystals were interrogated using various immunocytochemical techniques. The investigation was followed by characterization of the chemical properties of the liquid crystals (LC) after immersion in cell culture media using Fourier transform infrared spectroscopy (FTIR). The surface morphology of cells adhered to the LC was studied using atomic force microscopy (AFM). Consistent with the expressions of the integrins α2, α3 and β1, extracellular matrix proteins (laminin, collagen type IV and fibronectin) were found secreted by the HaCaT onto CELC and these proteins were also secreted by cells cultured on the glass substrates. FTIR analysis of the LC revealed the existence of spectrum assigned to cholesterol and ester moieties that are essential compounds for the metabolizing activities of keratinocytes. The immunostainings indicated that cell adhesion on the LC is mediated by self-secreted ECM proteins. As revealed by the AFM imaging, the constraint in cell membrane spread on the LC leads to the increase in cell surface roughness and thickness of cell membrane. The biophysical expressions of cells on biocompatible CELC suggested that CELC could be a new class of biological relevant material.

Αν και η Αυχενική Σπονδυλωτική Μυελοπάθεια (ΑΣΜ) αποτελεί την πιο κοινή αιτία δυσλειτουργίας νωτιαίου μυελού στους ενήλικες άνω των 55 ετών, οι μοριακοί μηχανισμοί παραμένουν άγνωστοι. Μέχρι σήμερα, πολλές προσπάθειες έχουν διενεργηθεί για την ανάπτυξη ενός αξιόπιστου πειραματικού μοντέλου AΣΜ. Ωστόσο, αρκετά μειονεκτήματα εμφανίζονται σε αυτές τις μελέτες. Στη παρούσα μελέτη έχουμε σκοπό τη δημιουργία ενός νέου, πρωτότυπου πειραματικού μοντέλου ΑΣΜ, το οποίο εξομοιώνει τα ιστολογικά και κλινικά χαρακτηριστικά της ανθρωπίνης νόσου. Mεθοδολογία: Μετά από αφαίερεση του πετάλου του έβδομου αυχενικού σπονδύλου, ένα λεπτό τεμάχιο αρωματικού πολυαιθέρα τοποθετήθηκε κάτω από το πέταλο του έκτου αυχενκού σπονδύλου σε κόνικλους Νέας Ζηλανδίας (Ομάδα ΧΠΠ). Σε μία άλλη ομάδα πειραματόζωων ο αρωματικός πολυαιθέρας αφαιρέθηκε 30 δευτερόλεπτα μετά την εμφύτευση (ομάδα ελέγχου). Νευρολογική εκτίμηση πραγματοποιήθηκε χρησιμοποιώντας τη κλίμακα του Tarlov μετά το πέρας της χειρουργικής διαδικασίας και ακολούθως εβδομαδιαίως. Ηλεκτροφυσιολογικές μελέτες πραγματοποιήθηκαν στις 20 εβδομάδες μετά το χειρουργείο και πριν από τη θυσία των πειραματόζωων. Ακολούθησαν ιστολογικές και ανοσοιστοχημικές μελέτες. Αποτελέσματα: Τα πειραματόζωα που άνηκαν στην ομάδα ελέγχου δεν εμφάνισαν νευρολογικά ελλείμματα κατά τη διάρκεια της μελέτης. Αντιθέτως τα πειραματόζωα που άνηκαν στη ΧΠΠ εμφάνισαν νευρολογικά ελλείματα. Στους νωτιαίους μυελούς προερχόμενους από την ΧΠΠ ομάδα ανεδείχθησαν οι χαρακτηριστικές ιστοπαθολογικές αλλοιώσεις της χρόνιας μυελοπάθειας. Ειδικότερα, ανεδείχθη σπογγώδης εκφύλιση της λευκής ουσίας, διάμεσο οίδημα και αποπλάτυνση των πρόσθιων κεράτων της φαιάς ουσίας. Επίσης ανεδείχθη κατακρήμνιση του μυελικού σάκου και διόγκωση του δακτυλίου της μυελίνης. Τέλος, η χρόνια πίεση του νωτιαίου οδήγησε σε ενεργοποίηση της απόπτωσης και διαταραχή της αρχιτεκτονικής του μικροαγγειακού συστήματος του νωτιαίου μυελού Συμπέρασμα: Το πρωτότυπο μοντέλο ΑΣΜ στους κονίκλους ποσομοιώνει το χωρικό και χρονικό προφίλ της ανθρώπινης νόσου στο σημείο της πίεσης του νωτιαίου μυελού. ΜΕΛΕΤΗ B Εισαγωγή: Η φλεγμονή, η δημιουργία ουλώδους ιστού και η διαταραχή του μικροαγγειακού συστήματος του νωτιαίου μυελού είναι ορισμένα από τα κύρια παθοφυσιολογικά φαινόμενα της ΑΣΜ. Ωστόσο οι μοριακοί μηχανισμοί που εμπλέκονται σε αυτά τα φαινόμενα κάτω από τη χρόνια και προοδευτική πίεση του νωτιαίου μυελού παραμένουν ανεξερεύνητα. Mεθοδολογία: Στη συγκεκριμένη μελέτη χρησιμοποιήθηκε το πειραματικό μοντέλο ΑΣΜ που περιγράφεται στη μελέτη Α με σκοπό να διερευνηθεί ο ρόλος του NF-κB και των πρωτεινών της εξωκυττάριας ουσίας στην ΑΣΜ. Εν συντομία, κόνικλοι Νέας Ζηλανδίας (διαφορετικά πειραματόζωα από εκείνα της μελέτης Α) χωρίστηκαν τυχαία σε δύο ομάδες: την ομάδα ΧΠΠ (n=15) και την ομάδα ελέγχου (n=15). Η έκφραση των πρωτεινών των υπομονάδων p50 και p65 του NF-kB, όπως επίσης και των ενζύμων διάσπασης της εξωκυττάριας ουσίας (MMP-2, MMP-9) και του ενεργοποιητή του πλασμινογόνου τύπου ουροκινάσης (urokinase-type plasminogen activator; u-PA) αξιολογήθηκαν σε τομές νωτιαίων μυελών προερχόμενων και από τις δύο ομάδες χρησιμοποιώντας ανοσοιστοχημική τεχνική. Στατιστική ανάλυση πραγματοποιήθηκε χρησιμοποιώντας SPSS για Windows, release 12.0 (SPSS Inc., Chicago, IL). Αποτελέσματα: Σε τομές νωτιαίων μυελών που προέρχονταν από πειραματόζωα που έπασχαν από ΑΣΜ αναδείχθηκε στατιστικά σημαντικά αυξημένη έκφραση των υπομονάδων του NF-κB (p50 & p65), όπως επίσης και των ενζύμων MMP-2, MMP-9, and u-PA σε σύγκριση με εκείνες που προέρχονταν από την ομάδα ελέγχου. Τέλος, σημαντικά θετική συσχέτιση παρατηρήθηκε μεταξύ των επιπέδων έκφρασης του NF-κB και εκείνων των MMP-9, MMP-2, and u-PA. Συμπέρασμα: Τα ευρήματα αυτά αποτελούν ισχυρές ενδείξεις πως η χρόνια και προοδευτική πίεση του αυχενικού νωτιαίου μυελού οδηγεί σε αυξημένη έκφραση των MMP-2, MMP-9 και u-PA πιθανόν μέσω της δράσης του μεταγραφικού παράγοντα NF-κB. Είναι βέβαιο ότι περισσότερες μελέτες απαιτούνται για την εξακρίβωση του ρόλου των πρωτεινών αυτών στην ΑΣΜ. / Although cervical spondylotic myelopathy (CSM) represents the most common cause of spinal cord impairment among individuals over 55 years old, the molecular mechanisms of the disease remain mainly unknown. To date, many experimental studies have been conducted to establish a reliable model of CSM, however most of them appear some limitations. In this study we aim to create a new animal model of CSM, which will reproduce the temporal course of the human disease and the local microenvironment at the site of spinal cord compression. Methods: Following C7 posterior laminectomy, a thin sheet of aromatic polyether was implanted underneath C5–C6 laminae of the New Zealand rabbits. A sham group in which the material was removed 30 sec after the implantation was also included. Motor function evaluation was performed after the material implantation and weekly thereafter using the Tarlov classification. At 20 weeks post-material implantation electrophysiological studies were also conducted. All the animals were sacrificed 20 weeks post-material implantation and histological and immunohistochemical studies were performed. Results: Clinical evaluation of animals after operation reveals no symptoms and signs of acute spinal cord injury. Moreover, no neurological deficits were noticed in the sham group during the course of the study. However, the animals which underwent implantation of compression material exhibited progressive neurological deficits throughout the study. Rabbits of the compression group experienced significant increased axonal swelling and demyelination, interstitial edema and myelin sheet fragmentation. Histological evaluation of C5 and C6 laminae (at the site of implantation) reveals osteophyte formation. Moreover, the chronic and progressive compression of the cervical spinal cord resulted in induction of apoptosis as well as in disruption of the basement membrane of vessels. Conclusion: The proposed rabbit CSM model reproduces the temporal evolution of the disease and creates a local microenvironment at the site of spinal cord compression, which shares similar features with that of human disease. STUDY B Introduction: Inflammation, glial scar formation and disruption of spinal cord microvasculature represent some of the principal neuropathological features of CSM. However, the molecular mechanisms which are implicated in these pathophysiological phenomena under the chronic and progressive compression of the cervical spinal cord remain interestingly unexplored. Methods: In this study (B) in order to evaluate the role of NF-κB and extracellular matrix proteins in cervical myelopathy we used the rabbit CSM model which was extensively characterized in study A. Briefly New Zealand rabbits (different cohort of animals than that of the study A) were randomly and blindly divided into the following two groups: CSM (n=15) and sham group (n=15). The expression pattern of p50 and p65 subunits of NF-kB, as well as that of MMP-2, MMP-9, and u-PA, was evaluated in spinal cord sections coming from both groups using immunohistochemistry technique. Statistical analysis was performed using SPSS for Windows, release 12.0 (SPSS Inc., Chicago, IL). Results: CSM animals exhibited statistically significant increased immuoreactivity in both NF-κB subunits, p50 and p65. Moreover, the levels MMP-2, MMP-9, and u-PA were found to be significantly increased in CSM animals compared to controls. Finally, strong positive correlation between NF-κB subunits immunoreactivity and that of MMP-9, MMP-2, and u-PA was demonstrated. Conclusion: The NF-κB pathway as well as the extracellular matrix proteins (MMP-2 and MMP-9) are involved in CSM. However, more studies are needed to clarify the functional role of these molecules in the pathobiology of CSM.

A traumatic skeletal muscle injury that involves the loss of a substantial portion of tissue will not regenerate on its own. Little is understood about the ability of the muscle to recover function after such a defect injury, and few research models exist to further elucidate the repair and regeneration processes of defected skeletal muscle. In the current research, a model of muscle injury was developed in the lateral gastrocnemius (LGAS) of the rat. In this model, the muscle gradually remodels but functional recovery does not occur over 42 days. Repair of the defect with muscle-derived extracellular matrix (ECM), improves the morphology of the LGAS. Blood vessels and myofibers grow into the ECM implant in vivo, but functional recovery does not occur. Addition of bone marrow-derived mesenchymal stem cells (MSCs) to the implanted ECM in the LGAS increases the number of blood vessels and regenerating myofibers within the ECM. Following 42 days of recovery, the cell-seeded ECM implanted LGAS produces significantly higher isometric force than the non-repaired and non-cell seeded ECM muscles. These results suggest that the LGAS muscle defect is a suitable model for the study of traumatic skeletal muscle injury with tissue loss. Additionally, MSCs seeded on an implanted ECM lead to functional restoration of the defected LGAS. / text

The overall aim of the present thesis is to clarify the control of intracellular chloride homeostasis in central neurons, because of the critical role of chloride ions (Cl–) for neuronal function. Normal function of the central nervous system (CNS) depends on a delicate balance between neuronal excitation and inhibition. Inhibition is, in the adult brain, most often mediated by the neurotransmitter γ-aminobutyric acid (GABA). GABA may, however, in some cases cause excitation. GABA acts by activating GABA type A receptors (GABAARs), which are ion channels largely permeable to Cl–. The effect of GABAAR-mediated neuronal signaling - inhibitory or excitatory - is therefore mainly determined by the Cl– gradient across the membrane. This gradient varies with neuronal activity and may be altered in pathological conditions. Thus, understanding Cl– regulation is important to comprehend neuronal function. This thesis is an attempt to clarify several unknown aspects of neuronal Cl– regulation. For such clarification, a sufficiently sensitive method for measuring the intracellular Cl– concentration, [Cl–]i, is necessary. In the first study of this thesis, we examined two electrophysiological methods commonly used to estimate [Cl–]i. Both methods, here called the interpolation and the voltage-ramp method, depend on an estimate of the Cl– equilibrium potential from the current-voltage relation of GABA- or glycine-evoked Cl– currents. Both methods also provide an estimate of the membrane Cl– conductance, gCl. With a combination of computational and electrophysiological techniques, we showed that the most common (interpolation) method failed to detect changes in [Cl–]i and gCl during prolonged GABA application, whereas the voltage-ramp method accurately detected such changes. Our analysis also provided an explanation as to why the two methods differ. In a second study, we clarified the role of the extracellular matrix (ECM) for the distribution of Cl– across the cell membrane of neurons from rat brain. It was recently proposed that immobile charges located within the ECM, rather than as previously thought cation-chloride transporter proteins, determine the low [Cl–]i which is critical to GABAAR-mediated inhibition. By using electrophysiological techniques to measure [Cl–]i, we showed that digestion of the ECM decreases the expression and function of the neuron-specific K+ Cl– cotransporter 2 (KCC2), which normally extrudes Cl- from the neuron, thus causing an increase in resting [Cl–]i. As a result of ECM degradation, the action of GABA may be transformed from inhibitory to excitatory. In a third study, we developed a method for quantifying the largely unknown resting Cl– (leak) conductance, gCl, and examined the role of gCl for the neuronal Cl– homeostasis. In isolated preoptic neurons from rat, resting gCl was about 6 % of total resting conductance, to a major part due to spontaneously open GABAARs and played an important role for recovery after a high Cl– load. We also showed that spontaneous, impulse-independent GABA release can significantly enhance recovery when the GABA responses are potentiated by the neurosteroid allopregnanolone. In a final commentary, we formulated the mathematical relation between Cl– conductance, KCC2-mediated Cl– extrusion capacity and steady-state [Cl–]i. In summary, the present thesis (i) clarifies how well common electrophysiological methods describe [Cl–]i and gCl, (ii) provides a novel method for quantifying gCl in cell membranes and (iii) clarifies the roles of the ECM, ion channels and ion transporters in the control of [Cl–]i homeostasis and GABAAR-mediated signaling in central neurons.

Die Untersuchung von Zell-Material-Wechselwirkungen ist bedeutsam für die Entwicklung innovativer Biomaterialien, wobei aus biophysikalischer Sicht der Einfluss mechanischer Eigenschaften auf das Zellverhalten, d.h., die Mechanotransduktion, von besonderem Interesse ist. Für diese Dissertation wurden humane Endothelzellen aus der Nabelschnurvene zur Adhäsion auf Polyacrylamidhydrogele (PAA-Hydrogele) gegeben, die mit einer Maleinsäurecopolymer-Beschichtung versehen waren. Für Experimente unter veränderlichen Substrateigenschaften wurden die Steifigkeit der PAA-Hydrogele und die Ligandenaffinität der Beschichtung variiert. Der erste Teil der Dissertation umfasste die Charakterisierung der beschichteten PAA-Hydrogele. Dafür wurde der Elastizitätsmodul gemessen und die Adsorption von Fibronektin untersucht. Im zweiten Teil der Dissertation wurden die PAA-Hydrogele in der Zellzugkraftmikroskopie während der initialen Zelladhäsion (2 h) verwendet. Dabei stellte sich heraus, dass zwar die finale Zellfläche unabhängig von den Substratparametern war, aber die Ausbreitung von Zellen mit zunehmender Steifigkeit und Ligandenaffinität schneller ablief. Außerdem waren der Anstieg und die Plateauwerte der Zellzugkräfte auf steiferen Substraten größer. Die Steifigkeitsabhängigkeit lässt sich aus der Dehnungsversteifung des Aktinzytoskeletts unter Wirkung einer Spannung erklären. Eine Zunahme der Ligandenaffinität führte ebenfalls zu einer schnelleren Zunahme und größeren Plateauwerten von Gesamtzellzugkräften. Diese Beobachtung kann der Zunahme von Reibungskräften zugesprochen werden. Im letzten Teil der Dissertation sollten die biophysikalischen Ergebnisse durch die Untersuchung intrazellulärer Signalprozesse zusätzlich unterlegt werden. Dafür wurde die Entwicklung von Adhäsionsstellen durch eine immunzytochemische Färbung untersucht. Obwohl diese aufgrund der technischen Herausforderungen keine umfassenden Aussagen liefern konnte, deuteten sich einige Korrelationen, z.B. eine schnellere Entwicklung der Adhäsionsstellen auf steiferen Substraten, an. Die Ergebnisse der Dissertation ordnen sich in den aktuellen Forschungsstand zur Mechanotransduktion von Zellen ein und konnten in Bezug auf die Adhäsionsdynamik neue Erkenntnisse beisteuern. Vor allem der Stellenwert dissipativer Beiträge zu Zell-Substrat-Wechselwirkungen (z.B. Ligandenreibung) wurde unterstrichen. Diese sind in der Entwicklung neuer Biomaterialien mit spezifischen viskoelastischen Eigenschaften von besonderer Bedeutung. / The investigation of cell-substrate-interactions is of great importance for the development of innovative biomaterials. The influence of thematerials mechanical properties on cells and their functions, i. e., the process of mechanotransduction, is of particular interest from a biophysical point of view. In this dissertation human umbilical cord vein endothelial cells were seeded onto polyacrylamide hydrogels which had been modified by a maleic acid copolymer coating. To tune the mechanical properties of the substrate the hydrogels’ stiffness and the affinity of the coatings to the adhesion ligand fibronectin were variied. The first part of the dissertation is concerned with the characterization of the coated polyacrylamide hydrogels. The hydrogels’ Young’s modulus was measured and the adsorption of fibronectin was investigated. In the second part of the dissertation these cell culture scaffolds were used for cell traction force microscopy during the first two hours of cell adhesion. Although maximum cell area was not influenced by substrate parameters, cell spreading was faster for higher stiffness and higher ligand affinity. Traction force increase as well as plateau forces were higher on stiff substrates. The dependence of the dynamics of area and traction force on stiffness and their respective magnitudes after saturation could be related to properties of the actin cytoskeleton under stress. The increase in ligand affinity also led to a faster increase and higher mean plateau values of the total cell force. This observation was assigned to increasing friction forces between ligands and polymer coating. In the last part of the dissertation possible correlations between cell traction forces and intracellular signalling processes were examined. The development of adhesion sites during early cell adhesion was investigated by immunocytochemical staining. Due to technical reasons no comprehensive investigation could be realized, but nevertheless some correlations were observed, such as a faster adhesion site formation with higher stiffness. The results of this dissertation add to the current state of research regarding mechanotransduction of cells and yield new findings regarding to cell adhesion dynamics. Most notably viscous contributions to cell-substrate-interactions (i.e., ligand friction) were shown to influence cell behavior. This highlights that a thorough understanding of viscous processes is of utmost significance for the development of new biomaterials with specific viscoelastic properties.

La sclérose systémique est une maladie autoimmune dont l’une des complications majeures est la fibrose. La DNA topoisomérase I (topo) est l’un des principaux autoantigènes associés à cette maladie. Toutefois, aucun lien n’a encore pu être établi entre la présence des anti-topo et le développement de la fibrose. Les travaux antérieurs du laboratoire d’accueil ont montré une interaction directe de la topo avec la surface des fibroblastes et la matrice extracellulaire. Nous avons voulu caractériser ces interactions du point de vue moléculaire. La topo a donc été exprimée sous forme de 5 fragments, déterminés à partir de ses principaux domaines structuraux et de ses épitopes majeurs, chez E. coli. Les fragments purifiés ont été analysés pour leur interaction avec l’héparine, représentant les héparane sulfates de la surface des fibroblastes, et avec des protéines purifiées de la matrice extracellulaire. Nous avons montré que le fragment topo-N est le principal responsable de l’interaction avec l’héparine, ce qui suggère donc l’implication potentielle de ce domaine dans l’interaction de la topo avec la surface des fibroblastes. Le fragment topo-DIDII est responsable de l’interaction avec la plupart des protéines de la matrice extracellulaire étudiées, alors que le fragment topo-H15 n’interagit qu’avec la vitronectine. Aucune interaction des fragments topo-DIII et topo-C n’a été décelée. Ces résultats pourront maintenant servir à mieux comprendre le rôle potentiel de la topo et des autoanticorps circulants anti-topo dans la fibrose présente chez les personnes atteintes de sclérose systémique en contribuant à l’identification de la cible de la topo sur les fibroblastes. / Systemic sclerosis is an autoimmune disease in which one of the major complications is fibrosis. DNA topoisomerase I (topo) is a major autoantigen associated with this disease. However, no link has yet been established between the presence of anti-topo and the development of fibrosis. Previous work of the host laboratory showed a direct interaction of the topo with the surface of fibroblasts and extracellular matrix. We wanted to characterize these interactions at the molecular level. Topo was expressed in 5 fragments, determined from its main structural domains and its major epitopes, in E. coli. The purified fragments were analyzed for their interaction with heparin, representing heparan sulfates on the surface of fibroblasts, and with purified proteins of the extracellular matrix. We have shown that the topo-N fragment is responsible for interaction with heparin, suggesting hence, potential involvement of this domain in the interaction of topo with the surface of fibroblasts. The topo-DIDII fragment is responsible for the interaction with most proteins of the extracellular matrix studied, whereas the topo-H15 fragment only binds to vitronectin. No interaction of fragments topo-DIII and topo-C was found. These results can now be used to better understand the potential role of topo and circulating anti-topo autoantibodies in the fibrosis present in patients with systemic sclerosis in helping to identify the target of topo on fibroblasts.

Extracellular matrix (ECM) composition and structural integrity is one of many factors that influence cellular differentiation. Fibronectin (FN) which is in many tissues the most abundant ECM protein forms a unique fibrillary network. FN homes several binding sites for sulfated glycosaminoglycans (sGAG), such as heparin (Hep), which was previously shown to influence FN conformation and protein binding. Synthetically sulfated hyaluronan derivatives (sHA) can serve as model molecules with a well characterized sulfation pattern to study sGAG-FN interaction. Here is shown that the low-sulfated sHA (sHA1) interacts with FN and influences fibril assembly. The interaction of FN fibrils with sHA1 and Hep, but not with non-sulfated HA was visualized by immunofluorescent co-staining. FRET analysis of FN confirmed the presence of more extended fibrils in human bone marrow stromal cells (hBMSC)-derived ECM in response to sHA1 and Hep. Although both sHA1 and Hep affected FN conformation, exclusively sHA1 increased FN protein level and led to thinner fibrils. Further, only sHA1 had a pro-osteogenic effect and enhanced the activity of tissue non-specific alkaline phosphatase. We hypothesize that the sHA1-triggered change in FN assembly influences the entire ECM network and could be the underlying mechanism for the pro-osteogenic effect of sHA1 on hBMSC.