A DNA sequence-based phylogenetic tree (Dillon et al., 2004) places the species of the genus Sorghum into two sister lineages, one with x = 5 and the other with x = 10 as a basic chromosome number. It has not been resolved whether or not these lineages are monophyletic or polyphyletic. A repetitive sequence, CEN38, found only in Sorghum and sugarcane, was used to assess evolutionary relationships among Sorghum species. The objectives of this research were to determine the taxonomic distribution of CEN38, its chromosomal position(s), and its organization in DNA. CEN38 was detected by filter hybridization to be present in the DNA of 16 of 21 Sorghum species analyzed, ranging from 15 to ~21,000 copies. It was detected by fluorescence in situ hybridization (FISH) only in chromosomes of species of the section Eu-sorghum, where it had a pericentromeric distribution. The low copy number and/or chromosomal distribution of CEN38 in other Sorghum species apparently does not allow for its detection by FISH. Analysis of restriction enzyme digested DNA with homology to CEN38 and of fragments amplified by PCR using primers selected to amplify S. bicolor CEN38 sequences showed that S. laxiflorum and S. macrospermum have tandemly arranged CEN38 sequences as is found in S. bicolor. This supports the close evolutionary affinity of the species in the x = 10 lineage. In the x = 5 lineage, DNA of 11 of 16 species analyzed hybridized with CEN38 by filter hybridization. In S. versicolor, large DNA fragments (4.36 kb to 23 kb) generated by digestion with restriction enzymes hybridized to CEN38. Since a ladder of smaller fragments was not detected, CEN38 may have been inserted into a transposable element in this species and dispersed throughout the genome. Among species of the x = 5 lineage, PCR using primers for S. bicolor CEN38 amplified only DNA fragments from S. timorense and these formed a ladder based on a ~125 bp repeat. Since hybridization of the CEN38 sequence to DNA of S. timorense was not detected by filter hybridizations, these sequences apparently are not similar to CEN38. Cloning and sequencing of DNA from species of the x = 5 lineage that hybridizes to CEN38 are needed to determine whether or not they are in the CEN38 family. A monophyletic or polyphyletic origin of the x = 5 and x = 10 lineages was not resolved.

The microvasculature has the main function of transport of dissolved gases, nutrients and waste between blood and tissue. Systematically probing transvascular transport rates in these vessels under well defined conditions is challenging. In vivo and in vitro studies are characterized, respectively, by limited optical access and control over perfusion concentrations and failure to resemble the structure and function of an intact organ. In this thesis, I present the development of a microfluidic platform for investigating molecular transport across mouse mesenteric arteries (150-300μm diameter) in a controlled physico-chemical microenvironment. Intact vessels are perfused with 4 kDa FITC-Dextran and the permeation coefficient of this molecule across the vessel wall is quantified using laser scanning confocal microscopy paired with a 2-D numerical model. Functional viability of the examined vessel, through phenylephrine and acetylcholine dose responses, is probed, and shear and phototoxic effects are reported.

The microvasculature has the main function of transport of dissolved gases, nutrients and waste between blood and tissue. Systematically probing transvascular transport rates in these vessels under well defined conditions is challenging. In vivo and in vitro studies are characterized, respectively, by limited optical access and control over perfusion concentrations and failure to resemble the structure and function of an intact organ. In this thesis, I present the development of a microfluidic platform for investigating molecular transport across mouse mesenteric arteries (150-300μm diameter) in a controlled physico-chemical microenvironment. Intact vessels are perfused with 4 kDa FITC-Dextran and the permeation coefficient of this molecule across the vessel wall is quantified using laser scanning confocal microscopy paired with a 2-D numerical model. Functional viability of the examined vessel, through phenylephrine and acetylcholine dose responses, is probed, and shear and phototoxic effects are reported.

Over the past two decades a body of evidence concerning residual biological contamination on cleaned surgical instruments has accumulated. This is substantiated by the number of yearly surgery cancellations due to visible residue on instruments in surgical packs and incidences of iatrogenic Creutzfeldt-Jakob disease (iCJD). It is therefore imperative to develop a method of protein detection for use in clinical sterile services departments (SSDs) for monitoring of decontamination quality. This Thesis describes the development and use of an epifluorescence surface scanner (EFScan) technology in the assessment of proteinaceous residue on surgical instruments, by detecting protein pre-labelled with fluorescein isothiocyanate (FITC), and exploratory studies on the feasibility of label-free detection, using intrinsic protein fluorescence. Measurements using FITC labelling showed that residual protein on the order of micrograms can be found on new, single-use instruments (i.e. prior to use). This is comparable to the amount of residual protein found on retired, reusable instruments. To confirm the suitability of fluorescence techniques in the detection and quantification of proteinaceous residue, a blind, pilot study was carried out in conjunction with groups from Queen Mary University and the University of Southampton. Each University used a different labelling and detection method, and results showed good agreement between these methods. This showed that fluorescence is a suitable technique for the detection and quantification of proteinaceous contamination on surgical instruments. The next step in the project focussed on detection of contamination via intrinsic protein fluorescence from tryptophan residues, with a view to elimination of the labelling step. Intrinsic fluorescence of proteins in solution is widely characterised; however, fluorescence characteristics of solid or surface-bound protein have been little studied. Therefore, the characterisation of solid protein fluorescence and the emission characteristics of protein adsorbed onto stainless steel was undertaken. Analysis of the commonly used protein standard bovine serum albumin (BSA) showed that the two tryptophan residues it contains are highly susceptible to photo-oxidation in the solid state, resulting in conversion to the fluorescent photoproducts n-formylkynurenine (NFK) and kynurenine. Therefore, BSA is not suitable for use as a standard in the development of intrinsic fluorescence detection of surface-bound protein. The 72-tryptophan protein fibrinogen, as well as a series of other multi-tryptophan proteins, were assessed and it was found that photo-oxidation of the tryptophan residues did not occur on the irradiation timescale of 1 hour utilized. Therefore, it was concluded that lysozyme or gamma-globulins, a prominent group of serum proteins, would be more suitable candidates as a standard in subsequent research into the intrinsic detection and quantification of proteinaceous contamination. A third study explored the potential use of fluorescence in the early diagnosis of cataract. This involved the fluorescence characterisation of healthy porcine lenses and the use of UV irradiation of the lens to attempt to create cataract in vitro. There was found to be a large variation in fluorescence characteristics from lens to lens, suggesting that fluorophore concentrations can vary significantly. This implies that identification of a suitable standard for the early detection of cataract may be problematic. Attempts to create cataract resulted in the photo-oxidation pathway which had been observed in BSA, and although NFK and kynurenine play a role in cataractogenesis, the accumulation of these photoproducts is not analogous to a natural cataract. It was found that these products could be destroyed by irradiation of the lens at appropriate photo-bleaching wavelengths. However, this also destroyed intrinsic, protective fluorophores within the lens, suggesting that a light-based method of cataract treatment may not be achievable.

Most Adoptive Cell Therapies (ACT), including CAR T cell therapies, suffer failure because of the severe side effects due to loss-of-control of the therapeutic cells once they are inside the patient’s body, suggesting that novel strategies must be developed for a better in vivo control of these engineered cells. In the meantime, CAR T cell therapies targeting solid tumors have not experienced the remarkable success achieved with hematopoietic cancers, mainly due to continuous tumor antigen exposure and a suppressive tumor microenvironment. Here we designed a private passageway fusion receptor, which is composed of a ligand binding domain and a glycosylphosphatidylinositol (GPI) anchoring domain, to be expressed and localized to the surface of CAR T cells independently to the classical CAR T construct. These ligand binding domains preserve high binding affinity towards their cognate ligands and are only expressed on the CAR T cells that have been transduced. Therefore, cytotoxic drugs or immunosuppressants linked to the corresponding targeting ligands are shown to be specifically delivered to these fusion receptor positive CAR T cells for lowering the activity of the over-activated CAR T cells. On the other hand, we discovered that a potent TLR7 agonist is able to enhance the lysis effect of the exhausted CAR T cells in a co-culture model. Serial releasable and non-releasable targeted TLR7 agonists were prepared and tested. Based on these data, we suggest that our secret passageway fusion receptor platform provides a better control of the activity of CAR T cells using the corresponding targeting ligand-payload conjugates in a dose dependent manner and function as a doorway for the delivery of instructions to CAR T cells for versatile purposes.

Rupture of the anterior cruciate ligament (ACL) is one of the most common ligamentous injuries of the knee. Post rupture, the ACL does not heal on itself due to poor vasculature and hence surgical intervention is required to treat the ACL. Current surgical management of ACL rupture consists of reconstruction with autografts or allografts. However, the limitations associated with these grafts have prompted interest in tissue engineered solutions that combine cells, scaffolds and stimuli to facilitate ACL regeneration. This thesis describes a ligament tissue engineering strategy that involves incorporating biomolecules within fibers-based electrospun meshes which mimics the extra-cellular matrix microarchitecture of ligament. However, challenges exist with incorporation of biomolecules. Therefore, the goal of this research project was to develop two techniques to incorporate biomolecules within electrospun meshes: (1) co-axially electrospinning fibers that support surface-grafting of biomolecules, and (2) co-axially electrospinning fibers decorated with biomolecule-loaded microspheres. In the first approach, chitosan was co-axially electrospun on the shell side of poly caprolactone (PCL) and arginine-glycine-aspartate (RGD) was attached to the electrospun meshes. Bone marrow stromal cells (BMSCs) attached, spread and proliferated on these meshes. In the second approach, fluorescein isothiocyanate labelled bovine serum albumin (FITC-BSA) loaded chitosan-alginate (CS-AL) microspheres were fabricated. The effects of cation to alginate ratio, type of alginate and concentration of CaCl2 on microsphere size, FITC-BSA loading and release were systematically evaluated. The CS-AL microspheres were then incorporated into the sheath phase of co-axially electrospun meshes to achieve microsphere-decorated fiber composite meshes. The results from these model study suggest that both approaches are tractable for incorporating biomolecules within fibers-based electrospun meshes. Both these approaches provide platform for future studies that can focus on ligament-relevant biomolecules such as FGF-2 and GDF-5. / Master of Science

Die Arbeit untersucht den Einfluss des pH - Wertes auf die Fluoreszenzintensität von Multischichtsystemen während des Beschichtungsvorgangs von Siliziumdioxidpartikeln mit kovalent an Polyallylaminhydrochlorid (PAH) gebundenem Rhodamin - B - Isothiocyanat. Durch eine konsequente Pufferung mit 2 -(N - Morpholino)ethansulfonsäure während der Beschichtung kann eine Verbesserung der Homogenität der Schichtbildung und eine Erhöhung der Fluoreszenzintensität erreicht werden. Außerdem liegt eine lineare Steigerung der Fluoreszenzintensität proportional zur Anzahl der fluoreszenten Schichten vor. Weiterhin sollen kolloidale Partikel unter konstanter Pufferung zusätzlich zu Rhodamin – B – Isothiocyanat mit an PAH – gebundenem Fluoresceinisothiocyanat beschichtet werden. Dieses Farbstoffpaar weist bei Annäherung eine Fluoreszenzsteigerung durch einen Fluoreszenzresonanzenergietransfer aus. Durch Variation von Schichtanzahl und Abstand wurden verschiedene Partikelpopulationen hergestellt, die sich in Ihrer Fluoreszenzintensität analog zu einem Bead Array Assay im Durchflusszytometer klar differenzieren lassen und dabei auch eine gleichmäßige Steigerung der Fluoreszenzintensität analog zur Anzahl der fluoreszenten Schichten aufweisen.

Infection is a leading cause of death in hemodialysis patients, partly due to dysfunctional immunity. Frequent dialysis therapy improves patient outcomes and quality of life. We hypothesize that extended home hemodialysis (EHHD) also improves immune function compared to conventional in-hospital hemodialysis (CHD); therefore, we designed a prospective matching-cohort clinical study to assess serum inflammatory markers and the functional capacity of monocyte-derived dendritic cells (MDDCs) and T-lymphocytes. Serum CRP was decreased in EHHD patients suggesting that extended dialysis may decrease inflammatory solute/cytokine levels. Compared to controls, MDDCs from hemodialysis patients had similar endocytic capacity, expression of co-stimulatory molecules, and T-cell activation capacity. However, CHD was associated with the highest expression of CD83 and CD40. Activated T-cells in CHD patients also produced significantly more immunosuppressive IL-10 compared to EHHD patients and controls. Therefore, EHHD may improve immune function by decreasing inflammation, MDDC pre-activation, and synthesis of immunosuppressive cytokines.

Infection is a leading cause of death in hemodialysis patients, partly due to dysfunctional immunity. Frequent dialysis therapy improves patient outcomes and quality of life. We hypothesize that extended home hemodialysis (EHHD) also improves immune function compared to conventional in-hospital hemodialysis (CHD); therefore, we designed a prospective matching-cohort clinical study to assess serum inflammatory markers and the functional capacity of monocyte-derived dendritic cells (MDDCs) and T-lymphocytes. Serum CRP was decreased in EHHD patients suggesting that extended dialysis may decrease inflammatory solute/cytokine levels. Compared to controls, MDDCs from hemodialysis patients had similar endocytic capacity, expression of co-stimulatory molecules, and T-cell activation capacity. However, CHD was associated with the highest expression of CD83 and CD40. Activated T-cells in CHD patients also produced significantly more immunosuppressive IL-10 compared to EHHD patients and controls. Therefore, EHHD may improve immune function by decreasing inflammation, MDDC pre-activation, and synthesis of immunosuppressive cytokines.

No description available.