Talaromyces versatilis est un champignon filamenteux d’intérêt industriel grâce à sa capacité deproduction d’enzymes hydrolytiques. La Société Adisseo commercialise un cocktail enzymatiqueproduit par fermentation à partir de T. versatilis, sous le nom de Rovabio™. Ce cocktail est utilisé entant qu'additif alimentaire en nutrition animale, car la grande variété d'enzymes hydrolytiques qu’ilcontient peut dégrader les polysaccharides présents dans l’enveloppe des céréales, améliorant ainsila digestibilité la valeur nutritionnelle des matières premières agricoles. Malgré les efforts consentispour mieux connaître la biologie de T. versatilis, très peu est connu sur ce champignon.L’étudeprésentée ici vise à décrire les réseaux de régulation qui contrôlent l’expression des gènes codantpour ces enzymes hydrolytiques, en utilisant des approches génomiques et transcriptomiques.Avoir accès à une annotation correcte de la séquence génomique et posséder les outilsnécessaires pour l'ingénierie génétique sont essentiels pour réaliser des études de génomiquefonctionnelle. Donc, le premier volet de cette thèse a été l’analyse de la séquence génomique et lacuration manuelle de l'annotation, ce qui nous a conduits à évaluer le vaste potentiel génétique de T.versatilis pour la production et la sécrétion d'enzymes hydrolytiques impliquées dans la dégradationde la lignocellulose. Deuxièmement, un système de délétion des gènes initialement conçu pourAspergillus niger a été adapté à T. versatilis. Cette méthode permet le recyclage du marqueur desélection et est efficace dans des souches dont le système NHEJ est actif (Delmas, et al., 2014, AEM).Au cours de ce travail, deux mutants de délétion de T. versatilis ont été obtenus: ΔxlnR et ΔclrA.La première approche mise en place pour avoir une meilleure compréhension des réseaux derégulation via une vue globale du transcriptome, fut l’utilisation de la technique de RNAseq sur troiséchantillons issus de la souche sauvage de T. versatilis exposée au glucose, à la paille de blé et auglucose et paille de blé simultanément comme sources de carbone, respectivement. Les données ontmontré une augmentation massive des niveaux d’expression de nombreux gènes, en particulier ceuxcodant pour des enzymes hydrolytiques, lorsque le mycélium est exposé à la lignocellulose. Enfin, la dernière partie du projet s’est appuyée sur la la RT-qPCR, technique appropriée pourétudier un nombre limité de gènes dans une grande variété de conditions. Toutefois la normalisationdes données est une étape essentielle du flux de travail qui peut conduire à une interprétationbiologique incorrecte de la régulation des gènes. Le travail effectué sur les données de RNAseq nousa amené à reconsidérer la nature des gènes de référence classiquement utilisés, puisque la plupartd'entre eux présentaient des changements d'expression considérables en présence de lignocellulose.En conséquence, un nouvel ensemble de gènes de référence putatifs a été identifié et la stabilité deleur expression validée par RT-qPCR chez T. versatilis cultivé dans plus de 30 conditions différentes.Des jeux de données de RNAseq de 18 champignons filamenteux phylogénétiquement éloignés ontpar ailleurs été collectés, afin de démontrer que la sélection des gènes candidats pour lanormalisation des données de RT-qPCR chez T. versatilis peut être étendue à d'autres champignons(Llanos et al., 2014, BMC Genomics). Ces aspects méthodologiques validés, nous avons enfin réaliséune étude plus détaillée de la transcription d'un groupe de gènes d'intérêt par RT-qPCR, dans unegrande variété de conditions et 2 souches différentes, la souche sauvage et la mutante ΔxlnR.L'analyse de ces données a permis d'identifier des gènes aux profils d'expression similaires, quirépondent de la même façon aux substrats inducteurs et qui partagent probablement les mêmesmécanismes de régulation. / Talaromyces versatilis is an industrially important enzymes producing filamentous fungus.Adisseo Company commercializes the enzymatic cocktail, produced from T. versatilis fermentation,with the name of Rovabio™. This cocktail is applied as an animal feed additive as it contains a widevariety of hydrolytic enzymes that can degrade the polysaccharides present in the seed-coat and thusimproves the digestibility and increases the nutritional value of the agricultural raw materials.Although efforts have been done to study different aspects of the biology of T. versatilis, very little isknown about this fungus. This study aimed to describe the regulatory networks of genes encodingplant cell wall-degrading enzymes from this biotechnologically important fungus using genomic andtranscriptomic approaches.Having a correct annotation of the genomic sequence together with efficient tools for genomeengineering are essential for downstream functional genomics works and characterization of theregulatory networks. Therefore, the first task carried out an analysis of the genomic sequence and amanual curation of the annotation, which led us to assess the vast genetic potential of T. versatilis forthe production and secretion of hydrolytic enzymes involved in the degradation of lignocellulosicmaterials. Secondly, I adapted a gene deletion system initially designed for Aspergillus niger. Thismethod allows recycling of the selection marker and is efficient in a non-homologous end-joining(NHEJ)-proficient strain (Delmas, Llanos et al., 2014, AEM). During this work, two deletion mutants ofT. versatilis were obtained: ΔxlnR and ΔclrA.Towards better understanding of the regulatory network, I first contributed to an RNAseq-basedtranscriptomic study that was performed on the wild type strain of T. versatilis exposed to glucoseand wheat straw as carbon sources. The data showed a massive increase in transcript levels ofnumerous genes, in particular those encoding hydrolytic enzymes, when the mycelium wasincubated with lignocellulose.If RT-qPCR is indeed a suitable technique to study a limited number of genes in a large variety ofconditions, data normalisation is a critical step of the workflow that can lead to incorrect biologicalinterpretation of gene regulation. The work done on the RNA-seq data led me to reconsider the useof the classical reference genes, since most of them exhibited expression changes in the presence oflignocellulosic substrate. I therefore identified a new set of putative reference genes and validatedtheir expression stability by RT-qPCR in T. versatilis cultivated under more than 30 differentconditions. Then, I collected about a hundred RNA-seq datasets from 18 phylogenetically distantfilamentous fungi, to demonstrate that the use of the suitable candidates for RT-qPCR datanormalisation in T. versatilis can be extended to other fungi (Llanos et al., 2014 BMC genomics (minorrevisions)). Thereafter, I performed a more detailed RT-qPCR based transcriptional study of a groupof genes of interest, in a wide variety of conditions and in 2 strains, the wild-type and the ΔxlnRmutant. The analysis of expression data of the genes of interest allowed to identify genes with similarexpression patterns, which probably share the same regulatory mechanisms and also the substratesthat act as inducers for their expression

Une approche de métagénomique fonctionnelle a été mise en œuvre afin d’étudier les arsenaux enzymatiques produits par les microbiotes intestinaux de termites phytophages et d’identifier de nouvelles enzymes impliquées dans l’hydrolyse des polysaccharides végétaux, notamment des hétéroxylanes. Le criblage à haut débit des banques métagénomiques constituées à partir de trois espèces de termites sur une gamme de substrats chromogéniques a permis d’identifier plusieurs centaines de clones à activité dépolymérisante (glucanase, xylanase, mannanase, arabinanase), ainsi que des clones exprimant des activités auxiliaires (α-L-arabinofuranosidases, β-D-xylosidases, cellobiose hydrolases). Un total de 42 clones métagénomiques a été séquencé, générant 1,5 Mpb d’ADN assemblé en 58 séquences contigües d’une taille moyenne de 37,8 Kbp. 63 nouvelles Glycoside Hydrolases (GH) ont été identifiées. Ces dernières représentent 19 familles de la classification CAZy, dont les familles GH3, GH8, GH10, GH11, GH43 et GH51. Enfin, huit nouvelles enzymes des familles GH43 et GH51 ont été produites chez E. coli et leurs propriétés biochimiques ont été étudiées. Ces enzymes présentent des activités α-L-arabinofuranosidase, β-D-xylosidase ou L-arabinanase / A functional metagenomics approach was used to reveal the enzymatic diversity present in the guts of biomass-feeding termites and to identify enzymes involved in the degradation of biomass components, notably heteroxylans. High-throughput screening of metagenomic libraries, created using three different termite species, was performed using a variety of chromogenic substrates. This allowed the discovery of hundreds of clones expressing targeted biomass-degrading activities (e.g. depolymerases such as glucanase, xylanase, mannanase arabinanase and auxiliary activities such as α-L-arabinofuranosidases, β-D-xylosidases and cellobiohydrolases). A total of 42 clones were selected for a DNA sequence analysis, thus generating 1.5 Mbp that were assembled into 58 contiguous sequences. 63 new Glycoside Hydrolases (GH) belonging to 19 different families of the CAZy classification were identified, including ones from families GH3, GH8, GH10, GH11, GH43 and GH51. Finally, eight new enzymes, from families GH43 and GH51, were produced in E. coli and their biochemical properties were studied. These enzymes display α-L-arabinofuranosidase, β-D-xylosidase or arabinanase activities

As mudanças climáticas estão causando prejuízos em vários setores da economia mundial. Na reunião da COP21, que teve como foco estas mudanças climáticas, participantes do mundo todo decidiram tomar atitudes urgentes para tentar conter aumento da temperatura média global. Dentro deste cenário, a produção e o consumo de energia têm uma importância central, onde fontes de energia renováveis vêm sendo preferidas às fontes de energias fósseis. O Brasil tem uma participação importante na geração de energia renovável mundial aportando um 40% do total de sua matriz energética. A degradação dos componentes da parede celular vegetal tem um vasto potencial na geração de biocombustíveis e outros compostos verdes a partir da celulose, hemicelulose e lignina. Para isto estudos das enzimas capazes de degradas estes componentes vem sendo realizados, com ênfase nas enzimas hidrolases de glicosídeos. Dentre as hidrolases, encontram-se as arabinanases, enzimas capazes de hidrolisar o arabinano, componente polissacídeo da hemicelulose, em L-arabinose. Neste trabalho, estudos envolvendo duas arabinanases de Bacillus licheniformis foram realizados, iniciando na etapa de clonagem dos genes. Os produtos foram transformados em Escherichia coli e expressos e purificados. A avaliação da estabilidade térmica indicou uma afinidade das enzimas por metais divalentes. Tentativas de cristalização resultaram na formação de um cristal, que possibilitou a determinação da estrutura uma das arabinanases. Através de ensaios bioquímicos, foi determinada a especificidade por substrato, temperatura e pH ótimos e a atividade frente a metais. Foi observado que as enzimas são seletivas para arabinano não ramificado, tem temperatura ótima em 45 e 40 graus, para BlAbn-1 e BlAbn-2, respectivamente, e pH ótimo em 8 e 7. Por último, foram realizados ensaios complementares de sinergismo e atividade oxidativa. Embora os ensaios de atividade oxidativa tenham sido inconclusivos, os ensaios de sinergismo mostraram que a enzima BlAbn-1 é capaz de aumentar em 30% a atividade do coquetel enzimático Accellerase 1500 sobre biomassa pré-tratada e sobre celulose pura. Este efeito é ainda maior na presença de sulfato de níquel. / Climate change is causing losses in different sectors of the world economy. At the meeting of COP21, focused on climate changes, participants from around the world decided to take urgent actions to try to halt the increase in global average temperature. Within this scenario, the production and consumption of energy are of central importance, where renewable energy sources have been preferred to fossil fuels. Brazil has an important role in the global renewable energy generation by contributing 40% of its total energy mix. The degradation of the components of plant cell wall has a vast potential in the generation of biofuels and other green chemical from cellulose, hemicellulose and lignin. Thus, studies of enzymes that degrade these components have been carried out, with emphasis on glycoside hydrolases. Among the hydrolases are the arabinanases, enzymes capable of hydrolyzing arabinan, a polysaccharide component of hemicellulose, in L-arabinose. In this work, studies involving two arabinanases from Bacillus licheniformis were carried out, starting in gene cloning step. The products were transformed into Escherichia coli, expressed and purified. The evaluation of the thermal stability of the enzymes showed an affinity for divalent metals. Crystallization attempts resulted in the formation of a single crystal, which made it possible to determine the crystal structure of one arabinanase. Through biochemical assays, it was determined the substrate specificity, optimum temperature and pH and activity against metals. It was observed that the enzymes are selective for non-branched arabinan, have optimum temperature at 45 and 40 degrees, to BlAbn-1 and BlAbn-2, respectively, and optimum pH of 8 and 7. Finally, additional tests were performed to evaluate the possible synergism and oxidative activity. Although the oxidative activity assays were inconclusive, the synergism tests showed that BlAbn-1 is able to increase by 30% the activity of the enzymatic cocktail Accellerase 1500 on pre-treated biomass and on pure cellulose. This effect is even greater in the presence of nickel sulfate.

Nos últimos anos a química é apontada como solução para diversos problemas globais originados por um modo de vida não sustentável, em virtude disso o desenvolvimento econômico e social ficam vinculados aos conhecimentos em ações sustentáveis embasadas na química verde. Neste contexto emerge a indústria química baseada em matérias-primas renováveis, dentre as biomassas renováveis destacam-se os carboidratos com cerca de 75% da biomassa da terra. Os glicosídeos são moléculas orgânicas nas quais o açúcar está ligado à uma porção não-carboidrato (aglicona), dentre eles os C-glicosídeos se destacam por apresentarem tanto resistência à hidrólise ácida quanto à enzimática, característica que confere interesse a indústria de fármacos e às ciências dos materiais apresentando-se como excelentes blocos de construção. A condensação de Knoevenagel é a reação entre um grupo metileno ativado e um aldeído ou cetona levando à formação de um composto β, β-insaturado e é muito relevante na derivatização de C-glicosídeos. O objetivo principal deste trabalho é empregar a D-glicose, como fonte de matéria-prima renovável, na obtenção de Cglicosídeos e potenciais derivados de interesse industrial, visando oferecer ao ambiente uma opção através de processos mais sustentáveis, para isso dividiu-se o trabalho em três etapas: a primeira de preparação da cetona β-C-glicosídeos e reações de proteções, a segunda, de derivações diretas dessas moléculas, por meio das preparações das oximas, das aril cetonas C-glicosídeos, da cicloexenona C-glicosídeo e do metil pentenol C-glicosídeo e a terceira consistiu de derivação de moléculas, obtidas na segunda etapa, em gem halo-nitro, oxima aril e isoxazol aril. Na primeira etapa, síntese da cetona β-C-glicosídeo, fez-se alterações metodológicas e obteve-se um rendimento médio de 92%, o composto foi confirmado por TGA, FT-IR e RMN 13C, nas reações de proteção à cetona β-C-glicosídeo, acetilação e benzoilação, obteve-se rendimentos de 60% e 31,4% respectivamente, os compostos foram confirmados por FT-IR e RMN 13C. Na segunda etapa sintetizou a aril cetona C-glicosídeo, desprotegida e protegida, com 91% e 78% de rendimentos respectivamente, a cicloexenona C-glicosídeo acetilada com 60% de rendimento e o metil pentenil C-glicosídeo acetilado com até 71% de rendimento, oximas a partir da cetona β-C-glicosídeo desprotegida e posterior proteção (economizando uma etapa) e oximas a partir da cetona β-C-glicosídeo acetilada obtendo rendimentos de 73,6 % e 83%, também foi sintetizada a oxima da glicose e sua acetilação gerou o nitrilo da glicose em 60% de rendimento, os compostos foram confirmados por FT-IR e RMN 13C. Na terceira etapa foram obtidos os derivados, gem bromo-nitro C-glicosídeo acetilado 30% (rota desprotegida) e 73% (rota protegida), gemcloro C-glicosídeo acetilados 30% (rota desprotegida) e 72% (rota protegida). A aril cetona C-glicosídeo acetilada, a oxima aril C-glicosídeo acetilada e isoxazol C-glicosídeo acetilado apresentaram rendimentos 45%, 78% e 31% respectivamente, todos confirmados por FT-IR e RMN 13C. A síntese da cetona β-C-glicosídeo desprotegida em meio aquoso alcalino apresenta um alto rendimento e demonstrou uma enorme versatilidade podendo ser empregada na obtenção de muitos derivados, no entanto as reações de proteção são necessárias para derivação dessas moléculas e facilitação da análise. / In recent years, chemistry has been identified as a solution to several global problems caused by an unsustainable way of life, as economic and social development are linked to the knowledge of sustainable actions based on green chemistry. In this context emerges the chemical industry based on renewable raw materials, among the renewable biomasses stand out the carbohydrates with about 75% of the earth\'s biomass. Glycosides are organic molecules in which sugar is bound to a non-carbohydrate (aglycone) moiety, among them the C-glycosides stand out because they have both resistance to acid and enzymatic hydrolysis, which is of interest to the pharmaceutical industry and sciences of materials presenting themselves as excellent building blocks. The Knoevenagel condensation is the reaction between an activated methylene group and an aldehyde or ketone leading to the formation of an β, β-unsaturated compound and is very relevant in the derivatization of Cglycosides. The main objective of this work is to use D-glucose, as a source of renewable raw material, to obtain C-glycosides and potential derivatives of industrial interest, aiming to offer the environment an option employing more sustainable processes, for this the work was divided in three stages: the first one of preparation of the ketone β-C-glycosides and reactions of protections, the second, of direct derivations of these molecules, through the preparations of oximes, aryl ketones C-glycosides, cyclohexenone C-glycoside and methyl pentenol C-glycoside and the third step consisted of derivation of molecules obtained in the second step in gem halo-nitro, aryl oxime and isoxazole aryl. In the first step, synthesis of the β-C-glycoside ketone made methodological changes and obtained an average yield of 92%, the compound was confirmed by TGA, FT-IR and 13C NMR, in the protection reactions to β-C-glycoside ketone, acetylation and benzoylation, yields of 60% and 31.4% respectively were obtained, the compounds were confirmed by FT-IR and 13C NMR. In the second step, the unprotected and protected C-glycoside aryl ketone was synthesized in 91% and 78% yields respectively, the acetylated C-glycoside cyclohexenone in 60% yield and the acetylated methyl pentenyl C-glycoside in up to 71% yield, oximes from the deprotected β-C-glycoside ketone and subsequent protection (saving one step) and oximes from acetylated β-C-glucoside ketone yielding 73.6% and 83% yields, the glucose oxime was also synthesized and its acetylation generated the glucose nitrile in 60% yield, the compounds were confirmed by FT-IR and 13 C NMR. In the third stage the derivatives were obtained, gem bromo-nitro C-glycoside acetylated 30% (unprotected route) and 73% (protected route), gem-chloro C-glycoside acetylated 30% (route deprotected) and 72% (protected route). The acetylated C-glycoside aryl ketone, the acetylated C-glycoside aryl oxime and the acetylated C-glycoside isoxazole presented yields of 45%, 78% and 31% respectively, all confirmed by FT-IR and 13C NMR. The synthesis of β-C-glycoside ketone deprotected in alkaline aqueous medium presents a high yield and demonstrated an enormous versatility that can be used to obtain many derivatives, however the protection reactions are necessary for derivation of this molecules and facilitation of the analysis.

<p>The aim of this study was to investigate the effect the plant matrix and the structure of the flavonoid (i.e. whether aglycone or glycoside) may have on the gastrointestinal uptake and metabolism of luteolin derivatives from Artemisia afra traditional plant medicine. Specifically, how these two factors influenced the intestinal uptake and disposition of luteolin derivatives in pure and in Artemisia afra plant extract forms were to be assessed by investigating the uptake and metabolism of the luteolin derivatives in human intestinal epithelial Caco-2 cells and the perfused rat intestinal loop. To realize this aim, the following were determined: (1) identification and characterization of major luteolin derivatives found in Artemisia afra, (2) the effect of the plant matrix on the uptake of luteolin derivatives in Artemisia afra aqueous-extract forms across the Caco-2 cell monolayer, (3) the effect of the plant matrix on the absorption and metabolism of luteolin derivatives in Artemisia afra aqueous-extract forms in the perfused rat small intestine, (4) the effect of gut contents on the uptake and metabolism of luteolin derivatives in intestinal loop and (5) the metabolic profiles of luteolin derivatives obtained for the pure solutions versus plant aqueous extract solutions in Caco-2 cells and the rat intestine.</p>

L'objectif de cette thèse est de concevoir une chimiothèque à partir de synthons C-glycosidiques. Les composés obtenus sont destinés à l'identification de modulateurs de l'activité des protéines pour comprendre leur rôle dans les mécanismes cellulaires. Pour réaliser ce travail, nous nous sommes basés sur le concept de la Synthèse Orientée vers la Diversité (SOD) pour générer une collection de molécules par des réactions à plusieurs composants. A partir de glycals peracétylés, nous avons préparés les C-glycosides de départ qui portent une fonction aldéhyde sur l'aglycone. Nous avons montré qu'il était possible de synthétiser ces produits en irradiant le milieu réactionnel par les micro-ondes. Puis ces synthons ont été traité par une amine et un alcyne ce qui a permis de générer une série de propargylamines. Parmi les propargylamines synthétiseés nous avons pu montrer que la L-proline avait une activité auto catalytique et qu'elles conduisaient a une addition stéréosélective de l'alcyne sur l'iminium intermédiaire. Nous avons alors utilisé cette propriété pour combiner la réaction à 3 composants avec la chimie click pour obtenir en quatre étapes une banque de 40 C-glycosides complexes hautement fonctionnalisées. Dans la deuxième partie de ce travail nous avons mis à profit la présence d'un alcool allylique sur le cycle pyranne pour mettre au point une nouvelle réaction tandem, la réaction A3M. Ce nouveau procédé permet d'obtenir en une seul étape des pyridino pyrannes par une réaction à trois composants. Après oxydation de l'alcool en cétone, le C-glycoside est irradie par les micro ondes en présence d'une amine primaire, et d'une alcyne (couplage A3). Cette première réaction est suivie d'une addition de Michael intramoléculaire sur la double liaison activée pour donner stéréo sélectivement le composé bicyclique

Human maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI) are the small-intestinal glucosidases responsible for catalyzing the last glucose-releasing step in starch digestion. MGAM and SI are each composed of duplicated catalytic domains, N- and C-terminal, which display complementary substrate specificities for the mixture of short linear and branch oligosaccharide substrates that typically make up terminal starch digestion products. As MGAM and SI are involved in post-prandial glucose production, regulating their activities with α-glucosidase inhibitors is an attractive approach to controlling blood glucose levels for the prevention and treatment of Type 2 diabetes. To better understand the complementary activities and mechanism of inhibition of these intestinal glucosidases, this thesis aims to characterize the individual N- and C-terminal MGAM and SI domains using a combination of X-ray crystallographic structural studies, enzyme kinetics, and inhibitor studies. First, the structure of the N-terminal domain of MGAM (ntMGAM) was determined in its apo form and in complex with the inhibitor acarbose. In addition to sequence alignments and kinetics studies, the structures provide insight into the preference of the N-terminal MGAM domain for short linear substrates and the C-terminal domain for longer substrates. Second, the structure of ntMGAM was determined in complex with various α-glucosidase inhibitors, including those currently on the market (acarbose and miglitol), a new class of inhibitors from natural extracts of Salacia reticulata (salacinol, kotalanol and de-O-sulfonated kotalanol) and chemically synthesized derivatives of salacinol. These studies reveal the features of the Salacia reticulata inhibitors that are essential for inhibitory activity and highlight their potential as future drug candidates. Third, the crystal structure of the N-terminal domain of SI (ntSI) was determined in apo-form and in complex with kotalanol. Structural comparison of ntSI and ntMGAM reveal key differences in active site architectures, which are proposed to confer differential substrate specificity.

Human maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI) are the small-intestinal glucosidases responsible for catalyzing the last glucose-releasing step in starch digestion. MGAM and SI are each composed of duplicated catalytic domains, N- and C-terminal, which display complementary substrate specificities for the mixture of short linear and branch oligosaccharide substrates that typically make up terminal starch digestion products. As MGAM and SI are involved in post-prandial glucose production, regulating their activities with α-glucosidase inhibitors is an attractive approach to controlling blood glucose levels for the prevention and treatment of Type 2 diabetes. To better understand the complementary activities and mechanism of inhibition of these intestinal glucosidases, this thesis aims to characterize the individual N- and C-terminal MGAM and SI domains using a combination of X-ray crystallographic structural studies, enzyme kinetics, and inhibitor studies. First, the structure of the N-terminal domain of MGAM (ntMGAM) was determined in its apo form and in complex with the inhibitor acarbose. In addition to sequence alignments and kinetics studies, the structures provide insight into the preference of the N-terminal MGAM domain for short linear substrates and the C-terminal domain for longer substrates. Second, the structure of ntMGAM was determined in complex with various α-glucosidase inhibitors, including those currently on the market (acarbose and miglitol), a new class of inhibitors from natural extracts of Salacia reticulata (salacinol, kotalanol and de-O-sulfonated kotalanol) and chemically synthesized derivatives of salacinol. These studies reveal the features of the Salacia reticulata inhibitors that are essential for inhibitory activity and highlight their potential as future drug candidates. Third, the crystal structure of the N-terminal domain of SI (ntSI) was determined in apo-form and in complex with kotalanol. Structural comparison of ntSI and ntMGAM reveal key differences in active site architectures, which are proposed to confer differential substrate specificity.

<p>The aim of this work was to develop a production process for the enzyme xyloglucan <i>endo</i>-transglycosylase from <i>Populus tremula x tremuloides</i> (<i>Ptt</i>XET16-34). The natural transglycosylating activity of this enzyme has previously been employed in a XET-Technology. This chemo enzymatic method is useful for biomimetic modification of cellulose surfaces and holds great potential for industrial applications. Thus, it requires that the XET-enzyme can be produced in larger scale.</p><p>This work also shows how the wildtype <i>Ptt</i>XET16-34 was modified into a glycosynthase. By mutation of the catalytic nucleophile into an alanine, glycine or serine residue, enzymes capable of synthesising defined xyloglucan fragments were obtained. These defined compounds are very valuable for further detailed studies of xyloglucan active-enzymes, but are also useful in molecular studies of the structurally important xyloglucan-cellulose interaction.</p><p>A heterologous production system for <i>Ptt</i>XET16-34 was previously developed in the methylotrophic yeast Pichia pastoris. A methanol-limited fed-batch process was also previously established, but the yield of active XET was low due to proteolysis problems and low productivity. Therefore, two alternative fed-batch techniques were investigated for the production of <i>Ptt</i>XET16-34: a temperature-limited fed-batch (TLFB) and an oxygen-limited high-pressure fed-batch (OLHPFB).</p><p>For the initial recovery of XET after the fermentation process, two different downstream processes were investigated: expanded bed adsorption (EBA) and cross-flow filtration (CFF).</p>

<p>The aim of this study was to investigate the effect the plant matrix and the structure of the flavonoid (i.e. whether aglycone or glycoside) may have on the gastrointestinal uptake and metabolism of luteolin derivatives from Artemisia afra traditional plant medicine. Specifically, how these two factors influenced the intestinal uptake and disposition of luteolin derivatives in pure and in Artemisia afra plant extract forms were to be assessed by investigating the uptake and metabolism of the luteolin derivatives in human intestinal epithelial Caco-2 cells and the perfused rat intestinal loop. To realize this aim, the following were determined: (1) identification and characterization of major luteolin derivatives found in Artemisia afra, (2) the effect of the plant matrix on the uptake of luteolin derivatives in Artemisia afra aqueous-extract forms across the Caco-2 cell monolayer, (3) the effect of the plant matrix on the absorption and metabolism of luteolin derivatives in Artemisia afra aqueous-extract forms in the perfused rat small intestine, (4) the effect of gut contents on the uptake and metabolism of luteolin derivatives in intestinal loop and (5) the metabolic profiles of luteolin derivatives obtained for the pure solutions versus plant aqueous extract solutions in Caco-2 cells and the rat intestine.</p>