<p>Sutherlandia frutescens (tribe Galegeae, Fabaceae), is a popular medicinal plant traditionally used in South Africa. In 2000, a company called Phyto Nova (Pty) Ltd. initiated large-scale cultivation and contract manufacturing of tablets, made from the powdered herb (i.e. thin stems and leaves). Most of these commercial Sutherlandia solid dosage forms are made from the dried leaf powder but recently a new product, viz. Promune&trade / capsules, made from a freeze-dried aqueous extract, came on the market and was claimed to be &ldquo / better&rdquo / as it mimics the traditional tea. However, the pharmaceutical quality and stability of these preparations have not yet been investigated. The objectives of this study were firstly, to develop a validated stability-indicating HPLC assay for sutherlandioside B (SU-B) / secondly, to compare the SU-B levels in the two commercially available Sutherlandia products viz, the Phyto Nova Sutherlandia SU1&trade / tablet and the Promune&trade / capsule, and, thirdly, to determine the effect of elevated temperature and humidity as well as acid hydrolysis on the SU-B levels in these two products.</p>

Protein-carbohydrate interactions are pivotal to many biological processes, from plant cell wall degradation to host-pathogen interactions. Many of these processes require the deployment of carbohydrate-active enzymes in order to achieve their intended effects. One such class of enzymes, glycoside hydrolases, break down carbohydrate substrates by hydrolyzing the glycosidic bond within polysaccharides or between carbohydrates and non-carbohydrate moieties. The catalytic efficiency of glycoside hydrolases is often enhanced by carbohydrate-binding modules (CBMs) which are part of the modular structure of these enzymes. Understanding the carbohydrate binding function of these modules is often key to studying the catalytic properties of the enzyme. This thesis investigates the molecular determinants of carbohydrate recognition by CBMs that share similar amino acid sequences and overall three-dimensional structures and thus fall within the same CBM family. Specifically this research focused on two families; plant cell wall binding family 6 CBMs and the alpha-glucan binding family 41 CBMs. Through X-ray crystallography, isothermal titration calorimetry and other biochemical experiments, the structural and biophysical properties of CBMs were analyzed. Studying members of CBM family 6 allowed us to establish the overall picture of how similar CBMs interact with a diverse range of polysaccharide ligands. This was found to be due to changes in the topology of the binding site brought about by changes in amino acid side chains in very distinct regions of the binding pocket such that it adopted a three-dimensional shape that is complementary to the shape of the carbohydrate ligand. Members of CBM family 41 were shown to have nearly identical modes of starch recognition as found in starch-binding CBMs from other families. However family 41 CBMs are distinct as they are found mainly in pullulanases (starch debranching enzymes) and have developed binding pockets which are able to accommodate alpha-1,6-linkages, unlike other starch-binding CBM families. These are the first studies comparing multiple CBMs from within a given CBM family at the molecular level whose results allow us to examine the distinct modes of carbohydrate recognition within a CBM family. Analysis of the family 41 CBMs revealed that these CBMs are mainly found in pullulanases from pathogenic bacteria. Members from Streptococcal species were shown to specifically interact with glycogen stores within mouse lung tissue, leading us to investigate the role of alpha-glucan degradation by the pullulanase SpuA in the pathogenesis of Streptococcus pneumoniae. SpuA targets the alpha-1,6-branches in glycogen granules, forming alpha-1,4-glucan products of varying lengths. The overall three-dimensional structure of SpuA in complex with maltotetraose was determined by X-ray crystallography and showed that its active site architecture is optimal for interacting with branched substrates. Additionally, the N-terminal CBM41 module participates in binding substrate within the active site, a novel feature for CBMs. This is the first study of alpha-glucan degradation by a streptococcal virulence factor and aids in explaining why it is crucial for full virulence of the organism.

Clostridium perfringens is a gram positive spore forming anaerobe and a causative agent of gas gangrene, necrotic enteritis (pig-bel) and food poisoning in humans and other animals. This organism secretes a battery of exotoxins during the course of infection as well as a variety of virulence factors which may help to potentiate the activities of the toxins. Among these virulence factors is the μ-toxin, a family 84 glycoside hydrolase which acts to degrade hyaluronan, a component of human connective tissue. C. perfringens has 53 open reading frames encoding glycoside hydrolases. About half of these glycoside hydrolases are predicted to be secreted. Among these are CpGH84C, a paralogue of the μ-toxin, and CpGH89. CpGH89 shares sequence similarity to the human α-N-acetylglucosaminidase, NAGLU, in which mutations can cause a devastating genetic disease called mucopolysaccharidosis IIIB. One striking feature of the secreted glycoside hydrolase enzymes of C. perfringens is their modularity, with modules predicted to be dedicated to catalysis, carbohydrate-binding, protein-protein interactions and cell wall attachment. The extent of the modularity is remarkable, with some enzymes containing up to eight ancillary modules. In order to help understand the role of carbohydrate-active enzymes produced by bacterial pathogens, this thesis will focus on the structure and function of the modular extracellular glycoside hydrolase enzymes secreted by the disease causing bacterium, C. perfringens. These structure function studies examine two family 32 CBMs (carbohydrate-binding modules), one from the μ-toxin and the other from CpGH84C. As well we examine the complete structure of CpGH84C in order to help further our understanding of the structure of carbohydrate-active enzymes as a whole. Finally, the catalytic module of CpGH89 is characterized and its relationship to the human NAGLU enzyme is discussed.

Stevia rebaudiana Bertoni, une herbe vivace de la famille des Asteraceae originaire du Paraguay, est d'un intérêt croissant en tant que source d’édulcorants naturels acoloriques, les glycosides de steviol (SVglys). Ces diterpénoïdes sont organisés autour d’un noyau de steviol et diffèrent par le nombre et la nature d’unités de sucre liées à ce noyau. Ils sont accumulés à des concentrations allant de 4 à 20% de la masse sèche des feuilles, selon le génotype, le stade phénologique et les conditions de croissance. S. rebaudiana apparaît comme une espèce alternative prometteuse en Europe, mais nécessite au préalable une évaluation de ses besoins en culture et un travail de sélection variétale afin d’optimiser la teneur et la composition en SVglys en milieu tempéré. L'objectif de ce travail était d'étudier les sources de variabilité génotypique et environnementale pour l’accumulation en SVglys et la production de biomasse foliaire. Une forte variabilité génotypique a été observée pour la composition en SVglys et, à un degré moindre, pour la teneur en SVglys ainsi que pour des critères morphologiques et de précocité. L’environnement (fertilisation, durée du jour, stade phénologique, âge de la plante) a également eu un effet sur l’élaboration de la biomasse foliaire et sur la teneur en SVglys, alors que la composition en SVglys a été moins affectée par ces facteurs. Ces résultats suggèrent des mécanismes biochimiques et génétiques complexes régissant la voie de biosynthèse des SVglys. Ils laissent également entrevoir des possibilités de sélection variétale et donnent des indications sur les exigences de S. rebaudiana pour sa culture sous nos climats. / Stevia rebaudiana Bertoni, a perennial shrub of the Asteraceae family originating from Paraguay, is of increasing interest as a source of zero-calorie natural sweeteners: the steviol glycosides (SVglys). These diterpenoids differ in the number and the nature of sugar units bound to a steviol skeleton. They accumulate in leaves at concentrations ranging from 4 to 20%, according to genotype, phenological stage, and growth conditions. S. rebaudiana appears as a promising alternative culture in Europe, but requires investigations to assess its cultivation plant requirements and a breeding effort to optimize SVgly content and composition under temperate climate. The objective of this work was to explore the sources of genotypic and environmental variability for SVglys accumulation and leaf biomass production. High genotypic variability has been observed for SVgly composition and, to a lesser extent, for SVgly content as well as for morphological criteria and precocity. Leaf biomass and SVgly content varied also with the environment (fertilization, daylength, phenological stage) and over the years in perennial culture, while SVgly composition was less affected by these factors. These results suggested complex biochemical and genetic mechanisms regulating SVglys biosynthetic pathway. In parallel they revealed breeding potentialities and gave indications on S. rebaudiana requirements for its cultivation under temperate climate.

L'étude phytochimique de plantes médicinales suscite depuis toujours beaucoup d'intérêt à cause de la variété de métabolites secondaires à activités biologiques intéressantes fabriqués par les plantes. Dans ce travail de thèse, notre contribution à l'amélioration de la connaissance de quelques plantes médicinales ivoiriennes par l'isolement et la caractérisation de leurs molécules a été rapportée. Les espèces Gouania longipetala, Ventilago africana (Rhamnaceae), Combretum racemosum (Combretaceae) et Glyphaea brevis (Malvaceae) ont été investiguées. Soixante métabolites secondaires ont été identifiés par les techniques spectroscopiques (RMN et SM). Une première partie présente l'investigation phytochimique des parties aériennes de G. longipetala qui a conduit à l'isolement de 23 composés dont neuf saponosides à squelette de type dammarane et quatre hétérosides flavoniques de structures nouvelles. Dans un second temps, nos travaux ont mené à l'élucidation de 12 flavonoïdes dont deux nouveaux et un acide sesquiterpénique à partir des feuilles de V. africana. Ces flavonoïdes ont été identifiés à la rhamnocitrine substituée en position 3 par une chaîne diosidique ou triosidique. Les racines de Combretum racemosum ont fourni 16 triterpènes dont un à squelette de type 18-oléanène de structure nouvelle. Finalement, un dérivé du cinnamide et dix nouveaux C-glycosides de phényl nonane substitués en position 9 par un iminosucre ont été caractérisés à partir des racines de G. brevis. Cette étude correspond à la première identification structurale de métabolites secondaires des espèces Gouania longipetala, Ventilago africana (Rhamnaceae) et Combretum racemosum (Combretaceae). / The phytochemical study of medicinal plants has always raised a lot of interest because of the variety of secondary metabolites with interesting biological activities produced by plants. In this thesis, our contribution to improving the knowledge of some ivorian medicinal plants by the isolation and characterization of their molecules has been reported.Species Gouania longipetala, Ventilago africana (Rhamnaceae), Combretum racemosum (Combretaceae) and Glyphaea brevis (Malvaceae) were investigated. Sixty secondary metabolites were identified by spectroscopic techniques (NMR and MS).The first part presents the phytochemical investigation of the aerial parts of G. longipetala which led to the isolation of 23 compounds including nine new saponins with skeleton type dammarane and four new flavonoids glycosides.In a second step, our work has led to the elucidation of 12 flavonoids including two original and a sesquiterpene acid from the leaves of V. africana. These flavonoids have been identified as rhamnocitrin substituted at position 3 by a disaccharide or trisaccharide chain. The roots of Combretum racemosum provided 16 triterpenes and one of them is a new compound with a skeleton type 18-oleanene. Finally, a derivative of cinnamide and ten new alkyl phenyl C-glycosides substituted at position 9 by iminosugar have been characterized from the roots of G. brevis.This study represents the first structural identification of secondary metabolites of the species Gouania longipetala, Ventilago africana (Rhamnaceae) and Combretum racemosum (Combretaceae).

Magister Pharmaceuticae - MPharm

In 1990, the classification of carbohydrate-active enzymes (CAZymes) was introduced by the scientist Bernard Henrissat. According to sequence similarity, these enzymes were separated into families with conserved structures and reaction mechanisms. One interesting class of CAZymes is the group of glycoside hydrolases (GHs) containing more than 138000 modules divided into 131 families as of February 2013. One of the most versatile and the largest of these GH families, containing enzymes with numerous biomass-deconstructing activities, is glycoside hydrolase family 5 (GH5). However, for large and diverse families like the GH5 family, another layer of classification is required to get a better understanding of the evolution of diverse enzyme activities. In Paper I, a new subfamily classification of GH5 is presented in order to sort the family members into distinct groups with predictive power. In total, 51 subfamilies were defined. Despite the fact that several hundred GH5 enzymes have been characterized, 20 subfamilies lacking biochemically characterized enzymes and 38 subfamilies without structural data were identified. These highlighted subfamilies contain interesting targets for future investigation. The GH5 family includes endo-β-mannanases catalyzing the hydrolysis of the β-1,4-linked backbone of mannan polysaccharides, which are common hemicelluloses found as storage and structural polymers in plant cell walls. Mannans are commonly utilized as raw biomaterials in food, feed, paper, textile and cosmetic industries, and mannanases are often applied for modifying and controlling the property of mannan polysaccharides in such applications. The overwhelming majority of characterized mannanases are from microbial origin. The situation for plant mannanases is quite different, as the catalytic properties for only a handful have been determined. Paper II describes the first characterization of a heterologously expressed Arabidopsis β-mannanase. / År 1990 introducerade forskaren Bernard Henrissat en klassificering av kolhydrataktiva enzymer (CAZymer), enligt vilken enzymerna - baserat på sekvenslikhet - delades in i familjer med konserverade strukturer och reaktionsmekanismer. En intressant CAZym-klass är glykosidhydrolaserna (GH), en klass som i februari 2013 innehöll fler än 138000 katalytiska moduler indelade i 131 olika familjer. En av de största och mest varierade av GH-familjerna är glykosidhydrolasfamilj 5 (GH5), vilken innehåller en mångfald av identifierade enzymaktiviteter relevanta för nedbrytning av biomassa. För stora och diversifierade familjer som GH5 krävs det dock ytterligare en klassificeringsnivå för att bättre förstå evolutionen och uppkomsten av de många förekommande enzymaktiviteterna. I manuskript I presenteras en ny uppdelning av GH5 enzymer i subfamiljer med syfte att dela upp familjemedlemmarna i distinkta grupper som representerar olika funktioner. Utifrån denna klassificering kan sedan ett enzyms funktion förutsägas baserat på vilken subfamilj det tillhör. Totalt definierades 51 subfamiljer. Trots att hundratals GH5 enzymer har karaktäristerats så visade det sig att 20 av subfamiljerna helt saknar biokemiskt karaktäriserade enzymer och 38 av dem saknar publicerade proteinstrukturer. Dessa subfamiljer är särskilt intressanta för framtida studier. GH5-familjen inkluderar endo-β-mannanaser som katalyserar hydrolysen av den β-1,4-länkade huvudkedjan i mannanpolysackarider. Dessa växtpolymerer som ingår i hemicellulosagruppen är vanligt förekommande i cellväggarna, där de fungerar som energilagringsmolekyler eller har en strukturell funktion. Mannaner används ofta som råmaterial för industriell livs- och djurfodersproduktion, papper, textilier och kosmetika. I dessa processer behövs ofta mannanaser för modifiering och kontroll av egenskaperna hos dessa polysackarider. Den överväldigande majoriteten av alla karaktäriserade mannanaser kommer från mikroorganismer. Endast för ett fåtal växtmannanaser har de katalytiska egenskaperna analyserats. Manuskript II beskriver den första karaktäriseringen av ett heterologt uttryckt β-mannanas från Arabidopsis. / <p>QC 20130506</p>

No description available.

Glykosidhydrolaser (GHs) är enzymer som katalyserar hydrolys av glykosidbindningar i polysackarider och fungerar på endo- eller exo-sätt, beroende på om de riktar sig mot mitten eller änden av en glykan-kedja. De är viktiga i kolcykeln och i olika industrier som använder biomassa som substrat. GHs är fördelaktiga i många industriella processer på grund av deras höga specificitet, omsättningsgrad och biologiska nedbrytbarhet, men de kan vara instabila och är ofta dyra att producera. De varierar i specificitet och har ibland flera katalytiska domäner eller icke-katalytiska tillbehörsdomäner, vilket hjälper till att bryta ner polysackarider och/eller främjar enzymets livslängd. Många GHs kan ha kolhydratbindande moduler (CBMs) som ökar deras termostabilitet och/eller katalytiska aktivitet. CBMs är kopplade till andra domäner i multimodulära domäner av inter-domän länkar (IDLs), vilket är polypeptidkedjor som ger strukturell flexibilitet och låter CBMs nå önskade mål på ett substrat, men den fulla funktionen av IDLs i enzymstabilisering har inte dokumenterats. Kitinaser är en grupp av GHs som riktar sig mot det motsträviga polysackaridet kitin, vilket finns i både marina och markbundna miljöer. De finns i organismer såsom insekter med kitinhaltiga exoskelett och i svampar eller andra mikrober med kitininnehållande cellväggar, men de finns även i organismer som inte syntetiserar eller ens metaboliserar kitin, på grund av deras andra relevanta funktioner inom patogenicitet, immunförsvar, etc. Kitin och dess oligosackarid-derivat har flera funktioner i biomass-industrier och kan användas för medicinska ändamål. Många GHs innehåller icke-katalytiska CBMs, varav många är kitinbindande, och spelar därför en roll i att främja kitinbindning och hydrolys av deras enzympartners. Detta projekt fokuserar på ett modulärt GH18-kitinas kodat av genen Cpin_2580. Kitinasdomänen är flankerad av två CBMs. Tidigare forskning har visat att dessa inte är kitinbindande men föreslog att de påverkar enzymets termostabilitet. Däremot undersöktes inte IDL:ernas påverkan i den tidigare studien. För att bestämma rollen av IDLs designades primers för att klona nya genvarianter av Cpin_2580 för att producera nya proteiner med varierande längder av länkar för att bestämma vad för effekt längden har på enzymets termostabilitet. Dessa primers användes till PCR för att skapa gensekvenser med den befintliga Cpin_2580-18s-plasmiden som mall, följt av kloning, proteinproduktion, rening och analys med hjälp av fluoroforbindningsanalys. Nya proteinvarianter kunde genereras och produceras i liten skala, men produktionen upplevde problem, vilket ledde till att IDLs roll inte kunde fastställas fullt ut. / Glycoside hydrolases (GHs) are enzymes that catalyse the hydrolysis of glycosidic bonds in polysaccharides, functioning in endo- or exo-manners, depending on whether they target the middle or the end of a glycan chain. They are crucial in the carbon cycle and various industries that utilise biomass as substrate. GHs are advantageous in many industrial processes due to their high specificity, turnover rates, and biodegradability, but they can be unstable and are often costly to produce. They vary in specificity and sometimes carry multiple catalytic domains or non-catalytic accessory domains, aiding in polysaccharide breakdown and/or promoting the longevity of the enzyme. Many GHs can have carbohydrate binding modules (CBMs) attached that can be considered accessory domains, which increases their thermostability and/or catalytic activity in many cases. CBMs are attached to other domains in multi-modular enzymes by inter-domain linkers (IDLs), which are polypeptide chains that give structural flexibility and allow the CBMs to reach desired targets on a substrate, but the full function of IDLs in enzyme stabilisation has not been documented. Chitinases are a group of GHs that targets the recalcitrant polysaccharide chitin, which exists in both marine and terrestrial environments. They exist in organisms such as insects that have chitinous exoskeletons and in fungi or other microbes with chitin-containing cell walls, but they are also found in organisms that do not synthesise or even metabolise chitin, due to their other functions of relevance in pathogenicity, immune defence, etc. Chitin and its oligosaccharide derivatives have multiple functions in biomass industries, and can be used for medical purposes. Many chitinases contain non-catalytic CBMs, many of which are often chitin-binding, and therefore have a role in promoting chitin attachment and hydrolysis by their enzyme partners. This project focuses on a modular GH18 chitinase encoded by the gene Cpin_2580. The chitinase domain is flanked by two CBMs. Previous research has shown that these are not chitin-binding but suggested they do influence the thermostability of the enzyme. However, the impact of the IDLs was not explored in that previous study. To determine the role of the IDLs, primers were designed with the purpose of cloning new gene variants of the gene Cpin_2580 to produce novel proteins with varying lengths of linkers to determine the effect the length has on the thermostability of the enzyme. These primers were used for PCR to create novel gene sequences using the pre-existing Cpin_2580-18s plasmid as a template, followed by cloning, protein production, purification, and analysis using fluorophore binding assay. Novel protein variants could be generated and produced at small scale, but scaled-up protein production experienced problems, which led to the role of IDLs not being fully determined.

ABSTRACT This thesis describes an investigation into the role of acetylenic and allenic precursors in the formation of the important aroma compound β-damascenone (1). Chapter 1 provides an introduction to the subject, beginning with a brief history of the Australian wine industry which began with the first fleet’s arrival in 1788. Many of the various volatile compounds found in wine are then discussed, with particular emphasis on β-damascenone (1). Some previous syntheses of 1 are summarised, as well as the in vivo generation of this compound, and also the role of glycoconjugation in nature. The chapter concludes with the aims of the present work. Chapter 2 covers the synthesis of the suspected acetylenic precursor 9-hydroxymegastigma-3,5-dien-7-yne (36), which was prepared by the addition of 3-butyn-2-ol to 2,6,6-trimethylcyclohex-2-en-1-one, followed by a conjugate dehydration reaction. The synthetic sample of 36 was shown to be identical to a compound previously observed in the hydrolysate of 3,5,9-trihydroxymegastigma-6,7-diene (31). Upon acid hydrolysis, 36 produced > 90% β-damascenone (1). Chapter 3 outlines the synthesis and hydrolysis of the C9 glycoside 43, which was prepared by a modified Koenigs-Knorr procedure on aglycone 36. Diastereomerically pure samples of each of the two possible glycosides were synthesised from corresponding enantiomerically pure samples of 36, which in turn were prepared by the use of either (R) or (S) 3-butyn-2-ol. Detailed hydrolytic studies (at 25 ºC) were conducted on both the aglycone and the two glycosides: the half lives of conversion of 36 into 1 were 40 hours and 65 hours at pH 3.0 and pH 3.2 respectively; the (9R) diastereomer of 43 had half-lives of 3 days and 6 days, respectively at the same pH values, whereas the (9S) diastereomer had half lives of 3.5 days and 6.5 days, respectively at the same pH values. The synthesis of the other suspected precursor, megastigma-4,6,7-triene-3,9-diol (35) is covered in Chapter 4. This allene was prepared by addition of 3-butyn-2-ol to phorenol, with the allene function generated by reaction with lithium aluminium hydride. By using (3S)-phorenol and both (R) and (S) 3-butyn-2-ol, four different diastereomers of 35 were prepared and characterised. The (3S, 6R, 9S)-isomer of 35 was also found to be identical to a compound previously observed in the hydrolysate of (31). A detailed hydrolytic study of the four synthetic isomers of 35 is contained within Chapter 5. This study revealed that each of the four isomers underwent rapid epimerisation at 25 ºC and pH 3.0. Careful analysis of the four product mixtures by chiral GC-MS revealed that this epimerisation was occurring exclusively at C3. The complete absence of 3-hydroxydamascone (2) from any of the hydrolysates required a re-appraisal of the mechanism of in vivo formation of β-damascenone (1), which forms the focus of the second half of this chapter. The experimental procedures (materials and methods) for all work covered in chapters 2-5 are located in Chapter 6.