<p>The purpose of this study was to evaluate enantioselective analytical methods by separation of the enantiomers of four drugs (citalopram, zopiclone, tramadol and methylphenidate) and their metabolites. The analyses were performed with HPLC-UV with columns whose stationary phases were based on macrocyclic glycopeptides (Chirobiotic V, V2 and T) and polysaccharides (Lux Cellulose-1, Cellulose-2 and Amylose-2).</p><p>The Chirobiotic V column showed high selectivity for citalopram and its metabolites. High resolution was obtained using a mobile phase consisting of methanol, acetic acid and ammonia. High selectivity for the enantiomers of zopiclone and its metabolites were obtained on the Cellulose-2 column using a mobile phase consisting of acetonitrile and ammonium acetate buffer.</p><p>The enantiomers of tramadol were separated with the Amylose-2 column. However, changes in the pressure arose, probably caused by the additive NH₄HCO₃. When the analysis was repeated at a later occasion, reproducible results were not obtained. With the Cellulose-1 column, lower selectivity was obtained, resulting in unacceptably long analysis time.</p><p>Only a few analyses of methylphenidate were performed and the results indicated that the glycopeptide columns had higher selectivity for this compound than the polysaccharides.</p>

The purpose of this study was to evaluate enantioselective analytical methods by separation of the enantiomers of four drugs (citalopram, zopiclone, tramadol and methylphenidate) and their metabolites. The analyses were performed with HPLC-UV with columns whose stationary phases were based on macrocyclic glycopeptides (Chirobiotic V, V2 and T) and polysaccharides (Lux Cellulose-1, Cellulose-2 and Amylose-2). The Chirobiotic V column showed high selectivity for citalopram and its metabolites. High resolution was obtained using a mobile phase consisting of methanol, acetic acid and ammonia. High selectivity for the enantiomers of zopiclone and its metabolites were obtained on the Cellulose-2 column using a mobile phase consisting of acetonitrile and ammonium acetate buffer. The enantiomers of tramadol were separated with the Amylose-2 column. However, changes in the pressure arose, probably caused by the additive NH4HCO3. When the analysis was repeated at a later occasion, reproducible results were not obtained. With the Cellulose-1 column, lower selectivity was obtained, resulting in unacceptably long analysis time. Only a few analyses of methylphenidate were performed and the results indicated that the glycopeptide columns had higher selectivity for this compound than the polysaccharides.

In 1990, the classification of carbohydrate-active enzymes (CAZymes) was introduced by the scientist Bernard Henrissat. According to sequence similarity, these enzymes were separated into families with conserved structures and reaction mechanisms. One interesting class of CAZymes is the group of glycoside hydrolases (GHs) containing more than 138000 modules divided into 131 families as of February 2013. One of the most versatile and the largest of these GH families, containing enzymes with numerous biomass-deconstructing activities, is glycoside hydrolase family 5 (GH5). However, for large and diverse families like the GH5 family, another layer of classification is required to get a better understanding of the evolution of diverse enzyme activities. In Paper I, a new subfamily classification of GH5 is presented in order to sort the family members into distinct groups with predictive power. In total, 51 subfamilies were defined. Despite the fact that several hundred GH5 enzymes have been characterized, 20 subfamilies lacking biochemically characterized enzymes and 38 subfamilies without structural data were identified. These highlighted subfamilies contain interesting targets for future investigation. The GH5 family includes endo-β-mannanases catalyzing the hydrolysis of the β-1,4-linked backbone of mannan polysaccharides, which are common hemicelluloses found as storage and structural polymers in plant cell walls. Mannans are commonly utilized as raw biomaterials in food, feed, paper, textile and cosmetic industries, and mannanases are often applied for modifying and controlling the property of mannan polysaccharides in such applications. The overwhelming majority of characterized mannanases are from microbial origin. The situation for plant mannanases is quite different, as the catalytic properties for only a handful have been determined. Paper II describes the first characterization of a heterologously expressed Arabidopsis β-mannanase. / År 1990 introducerade forskaren Bernard Henrissat en klassificering av kolhydrataktiva enzymer (CAZymer), enligt vilken enzymerna - baserat på sekvenslikhet - delades in i familjer med konserverade strukturer och reaktionsmekanismer. En intressant CAZym-klass är glykosidhydrolaserna (GH), en klass som i februari 2013 innehöll fler än 138000 katalytiska moduler indelade i 131 olika familjer. En av de största och mest varierade av GH-familjerna är glykosidhydrolasfamilj 5 (GH5), vilken innehåller en mångfald av identifierade enzymaktiviteter relevanta för nedbrytning av biomassa. För stora och diversifierade familjer som GH5 krävs det dock ytterligare en klassificeringsnivå för att bättre förstå evolutionen och uppkomsten av de många förekommande enzymaktiviteterna. I manuskript I presenteras en ny uppdelning av GH5 enzymer i subfamiljer med syfte att dela upp familjemedlemmarna i distinkta grupper som representerar olika funktioner. Utifrån denna klassificering kan sedan ett enzyms funktion förutsägas baserat på vilken subfamilj det tillhör. Totalt definierades 51 subfamiljer. Trots att hundratals GH5 enzymer har karaktäristerats så visade det sig att 20 av subfamiljerna helt saknar biokemiskt karaktäriserade enzymer och 38 av dem saknar publicerade proteinstrukturer. Dessa subfamiljer är särskilt intressanta för framtida studier. GH5-familjen inkluderar endo-β-mannanaser som katalyserar hydrolysen av den β-1,4-länkade huvudkedjan i mannanpolysackarider. Dessa växtpolymerer som ingår i hemicellulosagruppen är vanligt förekommande i cellväggarna, där de fungerar som energilagringsmolekyler eller har en strukturell funktion. Mannaner används ofta som råmaterial för industriell livs- och djurfodersproduktion, papper, textilier och kosmetika. I dessa processer behövs ofta mannanaser för modifiering och kontroll av egenskaperna hos dessa polysackarider. Den överväldigande majoriteten av alla karaktäriserade mannanaser kommer från mikroorganismer. Endast för ett fåtal växtmannanaser har de katalytiska egenskaperna analyserats. Manuskript II beskriver den första karaktäriseringen av ett heterologt uttryckt β-mannanas från Arabidopsis. / <p>QC 20130506</p>

Hydrated polysaccharide systems primarily using xylans along with mutans and alternans were studied using long atomistic simulations over a few microseconds to analyse structure-function relationships and nanoscale interactions with moisture. The influence of various structural and chemical factors such as alignment, nature of glycosidic linkage, effect of moisture / chemical substitutions was explored with a focus on structure-dynamics correlations to aid in the effective functionalisation of biomaterials for the development of a green, circular bioeconomy. The effect of initial geometry in terms of alignment of the xylan chains was observed to affect xylan chain extension and water dynamics significantly. Xylan interaction with moisture studied at high and low moisture contents showed compression along with structural locking, and evolution into segregated water-rich and polymer-rich phases respectively. The effect of chemical heterogeneity in terms of substitutions appeared to improve xylan dispersion in water resulting in faster dynamics for substituted residues with reference to unsubstituted residues along a given polymer chain. In addition, significant correlations between local hydration and polymer dynamics / structure in terms of relaxation times and order parameters was observed across differently substituted hydrated xylan systems, such that the polymer dynamics could be expressed as a local hydration water dependent component and a second partially stochastic component. In addition, the molecular structure of mixed linkage (1,3 and 1,6) as well as 1,3 linked glucans elucidated the effect of the nature of glycosidic linkage on the molecular structure of glucan oligosaccharides. A combination of glucan linkages and the ratio of different conformation states of the hydroxymethyl dihedral angle was observed to yield linear, twisted and extended structures in mutans, or helical coils of varying pitch sizes in alternans. Further modeling of structure-dynamics dependencies in hydrated xylan systems and analysis of the effect of alignment / chemical substitutions at the nanoscale is to be correlated with scattering or related experimental techniques in the future to understand the dynamics of hydrated xylan aggregates in typically aqueous solutions at varying intermediate length / timescales. In addition, the methodologies derived in this work to identify atom-specific, temporally sensitive, structural / dynamical parameters for analysing structural / dynamical variations at the nanoscale can be extended to study other hydrated biopolymeric systems. The role of substitutions, involving its polar nature and interactions with other xylans, can be extended to neutral groups such as arabinose sugars to broaden knowledge in carbohydrate science as well as being analysed further to improve effective functionalisation for tailoring physical properties influencing phenomena like aggregation / dispersion. / Hydrerade polysackaridsystem som primärt använde xylaner, mutaner och alternaner studerades med hjälp av långa atomistiska simuleringar under några mikrosekunder för att analysera struktur-funktionsförhållanden och interaktioner med fukt i nanoskala. Inverkan av olika strukturella och kemiska faktorer såsom placering, karaktären av glykosidbindning, effekten avfukt/kemiska substitutioner undersöktes med fokus på struktur-dynamiska korrelationer för att hjälpa till med en effektiv funktionalisering av biomaterial för utvecklingen av en grön, cirkulär bioekonomi. Effekten av initial geometri i termer av placering av xylan-kedjorna observerades påverka xylan-kedjeförlängningen och vattendynamiken signifikant. Xylaninteraktionen medfukt studerades vid höga och låga fukthalter och visade kompression tillsammans med strukturell låsning och utveckling till segregerade vattenrika och polymerrika faser respektive. Effekten av kemisk heterogenitet i termer av substitutioner verkade förbättra dispersionen av xylan i vatten vilket resulterade i snabbare dynamik för substituerade delar jämfört med osubstituerade delar längs en given polymerkedja. Dessutom observerades signifikanta korrelationer mellan lokal hydratisering och polymerdynamik/struktur i termer av relaxationstider och ordningsparametrar över olika substituerade hydratiserade xylansystem, så att polymerdynamiken kunde uttryckas som en lokal hydreringsvattenberoende komponent och en andra delvis stokastisk komponent. Dessutom klargjorde den molekylära strukturen av blandad koppling (1,3 och 1,6) såväl som 1,3 länkade glukaner effekten av glykosidkopplingens natur på molekylstrukturen hos glukanoligosackarider. En kombination av glukanbindningar och förhållandet mellan olika konformationstillstånd för den hydroximetyldiedriska vinkeln observerades i linjära, vridna och utsträckta strukturer som i mutaner, eller som spiralformade spolar med varierande stigningsstorlekar i alternaner. Ytterligare modellering av struktur-dynamiska beroenden i hydratiserade xylansystem och analys av effekten av inriktning/kemiska substitutioner på nanoskala ska korreleras med spridning av relaterade experimentella tekniker i framtiden för att förstå dynamiken hos hydratiserade xylanaggregat i typiskt vattenhaltiga lösningar vid varierande medellängd /tidsskalor. Dessutom kan de metoder som härrör från detta arbete för att identifiera atomspecifika, tidsmässigt känsliga, strukturella/dynamiska parametrar för analys av strukturella/dynamiska variationer på nanoskala, utvidgas till att studera andra hydratiserade biopolymera system. Substitutionernas roll, som involverar dess polära natur och interaktioner med andra xylaner, kan utvidgas till neutrala grupper som arabinossocker för att bredda kunskapen inom kolhydratvetenskap samt analyseras ytterligare för att förbättra effektiv funktionalisering för att skräddarsy fysiska egenskaper som påverkar fenomen som aggregering / dispersion. / <p>QC 2023-05-22</p>