The effects of the toxic dinoflagellate, karenia brevis (Wilson clone), on larval survival and development of the northern quahog (=hard clam, Mercenaria mercenaria), eastern oyster (Crassostrea virginica) and bay scallop (Argopecten irradians) were studied in the laboratory. The effects of K. brevis on feeding activities of juveniles from these species plus the green mussel (Perna viridis) were also examined. Finally, adult bay scallops were exposed to K. brevis for two weeks to investigate possible cytotoxic effects. Survival of 3-day-old larvae was generally > 85% for all shellfish species at Karenia brevis densities of 100 cells . ml-1 or less, and not significantly different between whole and lysed culture. At 1,000 cells . ml-1, survival was significantly less in lysed culture than whole culture for both M. mercenaria and C. virginica. Survival of 7-day-old larvae in all species was not significantly affected at densities up to 1,000 cells . ml-1. At 5,000 cells . ml-1, however, survival was reduced to 37, 26 and 19% for A. irradians, M. mercenaria and C. virginica, respectively. Development of C. virginica and M. mercenaria larvae was protracted at K. brevis densities of 1,000 cells . ml-1. Clearance rates of juveniles were determined under static and flow-through conditions using whole and lysed cultures of K. brevis. The bay scallop was most sensitive, exhibiting a 79% reduction in clearance rate at 1,000 cells . ml-1 of whole culture. The eastern oyster was least responsive, showing a 38% reduction in clearance rate between the same treatments. The green mussel and the northern quahog displayed intermediate responses. Similar results were observed during longer (2 day) exposures to a continuous supply of K. brevis. Bay scallops showed a significant decline in clearance rate at 100 cells . ml-1 after 24 hr exposure; clearance rate of oysters was not affected by K. brevis at this concentration. No mortality was observed for any species during these brief exposures. Adult bay scallops exposed to K. brevis for two weeks showed degenerative and inflammatory changes in the digestive gland, including reduced thickness of the epithelium, increased size of digestive tubule lumens and hemocytic infiltration. The prospect for recovery of bay scallop populations in Florida may be hampered by recurring blooms of K. brevis.

Anthropogenic climate change is one of the main challenges affecting the globe, with particular implications for the oceans. Marine climate change research has moved forward rapidly in recent years, and a range of physical model outputs are available that can be used by ecologists to help predict how species might be affected into the future. Policy makers require a level of understanding of how certain species and their ranges might change so that they can respond with sustainable management actions. This thesis aims to make use of a number of modelling techniques to explore implications of past and future conditions for marine species, and to appraise those tools that can be used under differing circumstances. Policy questions are answered relating to changes in the abundance and distribution of marine species. The links between historical climatic conditions and Barents Sea cod abundance are explored using Generalised Additive Models using data collected in the middle of the 20th century. This valuable historical data indicated that cod have temperature preferences and expand and shift their distributions based on environmental conditions. A simpler modelling technique is used to examine how oxygen conditions have changed in recent decades in the North Sea, how they might change in the future, and what implications this has for commercial fish species. The models show that oxygen conditions have improved recently and that they will not decrease to levels that result in large negative effects in the coming century. Species distribution modelling using a combination of global and downscaled model outputs shows that the UK will become more suitable for some non-native and harmful algal species in the 21st century, and less suitable for others. The model outputs contribute to the understanding of climate change effects and development of management tools to ensure the resilience of marine ecosystems into the future.

Diel vertical migration (DVM) can offer motile phytoplankton a competitive advantage over other phytoplankton species. DVM has been well documented in the harmful dinoflagellate, Karenia brevis; however, the extent to which changes in nutrient regimes and density stratification modify migration patterns has not been thoroughly investigated. A 2 m experimental column was constructed with sensors and sampling ports at four depths to obtain fluorescence and temperature measurements and discrete water samples. The environmental parameters of the experimental column represented temperature and nutrient conditions found on the West Florida Shelf (WFS), where Karenia blooms frequently occur. Results demonstrated a clear DVM pattern for K. brevis where surface aggregations occurred during light periods, and bottom aggregations occurred in dark periods. However, the rate and intensity of migration varied between experimental conditions. Injections of nutrient replete water at the surface and bottom did not appear to modify migratory behavior, in that a portion of the population resided at depth regardless of light or dark periods. Weak density stratification caused a delay in downward migration in dark periods, whereas strong density stratification caused a complete cessation of downward migration. In a weakly stratified environment with a bottom injected replete water mass, DVM patterns most closely replicate the pattern under weakly stratified conditions alone. Modifications in the natural DVM pattern of K. brevis with respect to varying environmental and nutrient conditions that occur on the WFS can have major implications current forecast model predictions, and for monitoring and mitigation strategies.

Les efflorescences de la micro-algue toxique Alexandrium minutum sont en constante augmentation au niveau mondial, accentuées par les apports anthropiques et le réchauffement global, et posent des problèmes écologiques, économiques et sanitaires. Lors d’une exposition à A. minutum, l’accumulation des phycotoxines paralysantes (PSP) dans les tissus semble être différente entre les huîtres diploïdes et triploïdes. Par ailleurs, de nombreuses fonctions physiologiques de l’huître C. gigas sont impactées. L’ensemble des fonctions physiologiques d’un organisme est régulé par des rythmes biologiques. Propriété fondamentale de la vie, les rythmes biologiques permettent aux organismes de se synchroniser et d’anticiper les variations cycliques de l’environnement. Dans mes travaux, je me suis intéressée aux rythmes biologiques des huîtres diploïdes et triploïdes C. gigas et à leurs interactions avec la contamination par les PSP. Une analyse in situ sur un an a mis en évidence une relation jusque-là inconnue entre le comportement valvaire de C. gigas et le cycle d’éclairement de la lune, ainsi qu’une relation fine et subtile des cycles comportementaux nycthéméraux et tidaux avec l’évolution annuelle de la photopériode. Cette relation est modulée par la ploïdie. Par ailleurs, la mise au point d’une approche non-invasive d’interférence par ARN a permis de mettre en évidence l’implication de l’horloge circadienne dans les processus de bioaccumulation des PSP chez C. gigas. Enfin, l’analyse du transcriptome cyclique dans les branchies de C. gigas a mis en évidence qu’au moins 42 % du transcriptome peut être exprimé de façon oscillante. Contre intuitivement, en condition d’alternance jour / nuit, une majorité de transcrits sont ultradiens, trois fois plus nombreux que les transcrits circadiens. Exposées à A. minutum, les huîtres ont montré un remodelage profond de leur transcriptome cyclique, pouvant entraîner la perte de synchronisation de l’huître avec son environnement. / Harmful algal blooms of Alexandrium minutum are constantly increasing at the global level, accentuated by anthropogenic contributions and global warming, causing ecological, economical and sanitary problems. During exposition to A. minutum, paralytic phycotoxins (PSP) accumulation differs between diploid and triploid oysters. Moreover, many physiological functions of the oyster C. gigas are impacted. All physiological functions of an organism are regulated by biological rhythms. As a fundamental property of life, biological rhythms allow organisms to synchronize and anticipate cyclic variations of the environment. In my work, I was interested in the biological rhythms of diploid and triploid oysters C. gigas, and their interactions with PSP contamination. A one-year in situ analysis revealed a previously unknown relationship between valve behavior of C. gigas and the lunar illumination cycle, as well as a fine and subtle relationship of the nycthemeral and tidal behavioral cycles with the annual evolution of the photoperiod. This relationship was modulated by the ploidy. Moreover, the development of a non-invasive approach of RNA interference revealed the involvement of the circadian clock in bioaccumulation processes of PSPs in C. gigas. Finally, analysis of the cyclic transcriptome in the gills of C. gigas showed that at least 42 % of the transcriptome can oscillate. Surprisingly, in day / night entrainment, most of transcripts were ultradians, three times more abundant than circadian transcripts. Exposed to A. minutum, results showed a profound remodeling of the cyclic transcriptome of C. gigas, which could lead to loss of synchronization of the oyster with its environment.

Anthropogenic effects are causing significant environmental degradation, and regardless of actions taken to mitigate further changes, humans and animals will have to live with these impacts (IPCC 2019). Rapid population growth in coastal regions, saltwater intrusion (SWI), lowering water quality, and increased presence of toxic materials are degrading coastal resiliency. An important and popular coastal region for the United States is the state of Florida, and it is also an area extremely vulnerable to aspects of climate change such as sea-level rise (SLR) (Noss 2011). This project analyzes how the state is currently experiencing the direct and indirect impacts of toxic materials on the state’s people, environment, and economy. It will do so through analysis of the performance of federal legislation created with the intent to protect human and environmental health, quantification of current rates of using toxic chemicals and potential pollution, as well as quantifying effects of both anthropogenic and natural toxic materials on Florida’s housing market. It was anticipated that legislation such as the Safe Drinking Water Act (SDWA) to ensure strict enforcement of drinking water standards and the Emergency Planning Community Right to Know Act (EPCRA) to prevent toxic pollution would be present in the vulnerable region. Also that natural phenomenon such as the harmful algal blooms significantly degrade the housing market through decreasing income through tourism and lowering housing prices in coastal neighborhoods. This project found that the SDWA is not being enforced, EPCRA data shows a huge risk to potential exposures from large storms, and that algal blooms are significant to housing prices in the state. Using these scientific findings to improve policy and appropriately communicating complex scientific topics to the public is extremely important. Doing so will enable a higher level of coastal resiliency as communities continue attempt to mitigate climate change, but also learn to understand current impacts and better live in a degrading environment.

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The initiation, persistence, and termination of harmful algal blooms (HABs) can all be influenced by nutrient availability. Recent studies have highlighted the role of both organic and inorganic nitrogen sources in HAB dynamics. The pelagophyte Aureoumbra lagunensis causes ecosystem disruptive algal blooms and is responsible for the longest recorded harmful algal bloom (1989-1997). Because of Aureoumbra's small size and its inability to use nitrate, it has been hypothesized that its ability to use ammonium and organic nitrogen, especially at low concentrations, contributed to the unusual persistence of this bloom. This project aimed to assess the response of Aureoumbra to inorganic and organic nitrogen sources by examining the expression of genes responsible for nitrogen assimilation, with an eventual intent of developing expression assays that are indicative of nitrogen source use and/or sufficiency in Aureoumbra. Large volume batch cultures of Aureoumbra were grown with either ammonium or urea as a nitrogen source. Physiological characteristics (C:N, chlorophyll [alpha] cell⁻¹, and Fv/Fm) were monitored throughout the growth period, and the expression of the AMT-1, AMT-2 and UREC genes was assayed at early-, mid- and late-exponential phases. The results show that Aureoumbra can use both ammonium and urea, and that it is well adapted to low-nutrient environments. Only one gene, AMT-1, appeared to be transcriptionally regulated in response to changing nitrogen concentration, and only to ammonium. The results of this study contribute to our understanding of how algae in general cope with low nutrient availability and should ultimately help to define the dynamics of these HAB events. / text

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