published_or_final_version / abstract / Zoology / Master / Master of Philosophy

Sweet potato is one of the 15 most important food crops worldwide. At least 30 different virus species, belonging to different taxonomic groups affect sweet potato. Little is known about the viruses present in sweet potato crops in Central America, which is the primary origin of sweet potato. The objective of this study was to design and implement primers for use in polymerase chain reaction (PCR) and Reverse transcription-PCR (RT-PCR) to identify and survey the diversity of plant viruses infecting sweet potato in Honduras and Guatemala. Primers were designed and used to amplify, clone, and sequence a taxonomically informative fragment of the coat protein (CP) gene for whitefly-transmitted geminiviruses (herein, sweepoviruses) and potyviruses, and of the heat shock protein 70 (HSP70) for the Crinivirus, Sweet potato chlorotic stunt virus (SPCSV). The partial genome sequences were used for identification based on phylogenetic relationships with reference sequences available in the GenBank database. All three of the plant virus groups identified in this study were found to occur either in single or in multiple infections. Results of the sequence analyses indicated that the genomic regions amplified in this study were capable of discriminating among potyvirus species, and strains of SPCSV. With respect to potyvirus, all isolates were identified as Sweet potato feathery mottle virus (SPFMV) species, except for two, which grouped phylogenetically with Sweet potato virus G (SPVG) and Sweet potato virus C (SPVC). All sweepoviruses detected in sweet potato plants belonged to a single phylogenetically, well-supported group that contains all other previously described geminiviruses (sweepoviruses) associated with sweet potato or closely related host species. These results demonstrate that the primers designed for amplification of plant virus species commonly recognized to infect sweet potato, effectively detected the viruses singly and in mixtures from symptomatic plants, and that the resultant fragment, when subjected to cloning and DNA sequenced, was phylogenetically informative at the species and/or strain levels, depending on the virus group.

HER2/neu is an oncogenic tumor-associated antigen over-expressed in several human tumors including breast and ovarian cancer. The selective expression of HER2/neu and its role in epithelial carcinogenesis makes HER2/neu an ideal target for immunotherapy. Tumor-derived chaperone-rich cell lysate (CRCL), containing numerous heat shock proteins, has successfully been used to generate tumor-specific immunity against a wide range of murine tumors and is a great candidate for an effective vaccine against HER2/neu positive tumors. In the first part of this study, the potency of human ovarian cancer-derived CRCL to activate dendritic cells (DCs) and to generate tumor-specific T cells in vitro has been investigated. Chaperone-rich cell lysate was generated from primary ovarian cancer tissues and SKOV3-A2, a HER2/neu, Wilm's tumor gene 1 (WT1) and HLA-A2 positive human ovarian tumor cell line. T cells from healthy donors and from ovarian cancer patients secreted higher amounts of interferon-γ following in vitro re-stimulation with ovarian cancer-derived CRCL compared to HER2/neu or WT1 peptide-pulsed DCs. We were also able to generate cytotoxic T lymphocyte activity against cancer-specific antigens such as HER2/neu and WT1 from all healthy donors, but from only one of the four ovarian cancer patients with bulky disease. In the second part of the study, the potency of tumor-derived CRCL to elicit the humoral immune response against a murine HER2/neu positive tumor (TUBO) has been examined. Vaccination of mice bearing a palpable tumor efficiently delayed the development of the tumor. In the vaccinated mice, CRCL vaccination induced significant anti-HER2/neu antibodies. Using B cell deficient mice and antibody transfer experiments, we have shown that the induction of anti-HER2/neu antibodies is both necessary and sufficient for the anti-tumor effect. Further, we have demonstrated that serum from TUB0 CRCL-vaccinated mice stimulated the internalization of the HER2/neu molecules, resulting in the down-regulation of their surface expression. Moreover, antibody-dependent cellular cytotoxicity has been observed against TUBO cells when presented with sera from vaccinated mice. These results indicate that CRCL may be a potent adjuvant for women suffering from HER2/neu positive ovarian or breast cancer and that this personalized vaccine may be a promising approach for active immunotherapy.

One unique feature of cancer cells that can be exploited for anticancer drug discovery is their dependence on their own cellular stress responses to survive the stressful acidotic, hypoxic and nutrient-deprived conditions within the tumor. Reasoning that desert organisms surviving under stressful conditions may have evolved to produce small molecule metabolites capable of modulating heat shock protein 90 (Hsp90) function, and/or other cell stress responses, we employed the cellular heat shock response in a moderate-throughput phenotypic assay. This strategy has resulted in the isolation and characterization of a number of small molecule natural products with heat shock induction activity from these organisms. Three such natural products are the subject of this study.In a limited structure-activity relationship (SAR) study, a previously known Hsp90 inhibitor radicicol (RAD), and several structurally related molecules including the fungal metabolite monocillin 1 (MON) were found to interact with Hsp90. In addition, RAD and MON were shown to lead to the degradation of Hsp90 client proteins involved in the cancer cell survival the estrogen receptor (ER) and the insulin-like growth factor receptor 1 (IGF-1R).We further characterized MON and showed that by targeting the molecular chaperone Hsp90, this compound induces components of the heat shock response at the transcriptional and translational levels, and leads to the acquisition of a thermotolerant phenotype in seedlings of the plant Arabidopsis thaliana. These findings support our hypothesis that there is ecological significance to the elaboration of small molecules that target stress responses.A number of extracts active in our phenotypic assay contained small molecules with no apparent Hsp90 activity. One such extract afforded terrecyclic acid A (TCA) with significant anti-tumor activity against a panel of human cancer cell lines. To characterize the biological activities of TCA we examined three key stress responsesthe heat shock, oxidative, and inflammatory responsesand show that TCA destabilizes these pathways associated with cancer cell survival through induction of oxidative stress (ROS), and inhibition of NF-kappaB transactivation.The isolation of RAD, MON and TCA from Sonoran desert organisms provides proof of principle that we have developed an effective strategy for the discovery of small molecule modulators of cellular stress responses that can serve as leads for the development of new anticancer drugs with novel mechanisms of action.

Hsp22 has been implicated in stress tolerance and longevity in various organisms though its role in Drosophila melanogaster larval thermal tolerance has not yet been investigated. I undertook this project to determine if over-expression of hsp22 in either muscle or motor neurons could alter locomotor ability at high temperature in third instar larvae of D. melanogaster. A combination of the UAS-gal4 and tet-On promoter systems was used to over-express transgenic hsp22 in the larvae. A β-galactosidase assay was used to determine the level of gene expression following administration of different amounts of tetracycline. A concentration of 100 μg/ml of tetracycline was found to elicit appreciably higher expression of the reporter gene than 0 and 0.1 μg/ml of tetracycline. Locomotor ability of larvae was assessed at a temperature of approximately 400C by measuring the time to movement failure (TMF). Larvae that were fed 100 μg/ml of tetracycline showed a significant decline in the TMF, which could be attributed to the presence of tetracycline at a concentration of 100 μg/ml. Possible reasons behind the lack of a noticeable effect of hsp22 over-expression on the TMF are discussed. The detrimental effect of tetracycline could be attributed to the decline in mitochondrial translation or a decline in the population of endogenous bacteria, which are known to exert positive effects on the development and function of Drosophila larvae. / Thesis (Master, Biology) -- Queen's University, 2007-10-01 14:24:15.801

There is a thermal range for the operation of neural circuits beyond which nervous system function is compromised. Poikilotherms are particularly vulnerable to thermal stress, since their body temperature can fluctuate with ambient temperature. Animals that experience frequent hyperthermia have various coping mechanisms such as the thermoprotective effect of a prior exposure to sublethal temperatures (heat shock response). The molecular mechanisms of this thermoprotection have yet to be understood. This project studies the changes in protein expression in the nervous system of gregarious Locusta migratoria subjected to heat shock. For this purpose, proteins were extracted from metathoracic ganglia (MTG) by different methods and a proteomic map was subsequently obtained by 2-D gel electrophoresis which was compared between control (CON) and heat-shocked (HS) animals. Additionally, the localization pattern of Hsp70 was studied in the MTG of CON and HS gregarious locusts. Although 2-D gels showed changes in the amount of different isoforms of ATP-synthase β, the overall amount of this protein subunit was found to be unchanged. My experiments also revealed no significant change in the distribution of Hsp70 in the MTG of locusts caused by HS. However, new findings show that this protein is constitutively expressed at higher levels in perineurium, glia and tracheal cells than in neurons. In separate experiments, isolated locusts were also examined in order to measure any stress-associated increase of Hsp70 in the tissues of animals not previously exposed to crowding pressure. Quantitative western blots did not show a consistent change of the Hsp70 level in the MTG of isolated locusts following heat shock. Results of my research suggest that the change in the protein profile of the metathoracic ganglion following heat shock, if it exists, is subtle or occurs in very low-abundance proteins whose monitoring requires the application of special techniques. Alternatively, the thermoprotective effect of heat shock on the nervous system might be promoted through other pathways which can change the protein activity at the post-translational level and may work independently from protein synthesis. / Thesis (Master, Biology) -- Queen's University, 2009-03-20 12:28:32.962

Nuclear receptors play crucial roles in the transcriptional regulation of many biological processes such as development and cellular differentiation. ERRalpha is known, along with coactivator PGC-1alpha, to playa central role in the control of energy metabolism in cardiac and skeletal muscle. They activate the expression of many genes involved in mitochondrial oxidative metabolism. Here we identified PROX1, a factor that was previously shown to broadly influence metabolism, as a regulator of this pathway. Indeed, PROX1 interacts in vitro and in vivo with both ERRalpha and PGC-1alpha. To provide more insight on the hepatic functions of ERRalpha and PROX1, we performed ChIP-on-chip using mouse liver, identifying a large number of ERRalpha and PROX1 genomic targets and reinforcing their role in energy metabolism. Over 40% of the target genes were found to be common to both factors and we observed that PROX1 could be recruited to ERRalpha binding sites and act as a negative regulator o fthe ERRalpha/POC-1alpha pathway.

HSP27, the Drosophila homolog of mammalian HspB1, is a nuclear sHsp that is both stress induced and developmentally regulated with a conserved cyto-protective function. It is multiply phosphorylated in vivo through an unconfirmed mechanism at unidentified residues. The effect of phosphorylation on its localization, oligomerization, and function is also not well understood. Here we report a genetic investigation into the role of Hsp27 in Drosophila development, and a preliminary investigation into the effect of phosphorylation on HSP27 localization and function in Drosophila S2 cells. Through a proteomic screen, a pro-apoptotic role for Hsp27 in embryonic developmentally regulated programmed cell death was suggested and supported by RNAi experiments, but not replicated using Hsp27null mutant stocks. These stocks were complicated by the intriguing appearance of multiple background mutations. Specific developmental defects in transgenic lines overexpressing phospho-mutant isoforms were then investigated. These too were subject to multiple independent incidences of background genetic mutation, which we believe may be related to Hsp27 mis-expression. We also studied the endogenous expression and localization pattern of HSP27 in stressed and unstressed Drosophila S2 cells. We found evidence that wild-type protein localization is influenced by stress. Finally, we took a first step toward understanding how phosphorylation might regulate HSP27 localization by examining the effect of targeted mutations of serine residues (S58, S71, and S75) on the localization pattern of exogenous HSP27. By characterizing the expression of endogenous and overexpressed HSP27 in Drosophila cells, we provide a foundation for future investigation into the regulated localization and function of HSP27 that can be extended to address the regulatory mechanisms that govern the protective capacities and oligomeric properties of phosphorylated HSP27 in Drosophila.

Algae are being considered as a possible tool for carbon dioxide mitigation because they uptake carbon dioxide during photosynthesis. Using flue gas from a coal-fired power plant as a carbon source would allow the algae to remove CO2 from the flue gas before it is emitted into the atmosphere. Because algae do not grow well at the high temperature, low pH conditions presented by flue gas, the traditional approach has been to alter the flue gas to suit the needs of the algae; however, this work aimed to genetically modify the algae Chlamydomonas reinhardtii to grow better at less than optimal conditions. Heat shock proteins are important in the stress responses of many organisms; therefore, this work modified C. reinhardtii to overexpress HSP70A in order to increase the tolerance of C. reinhardtii to higher temperature and lower pH. Experiments yielded mixed results, but there were several instances in which the modified algae appeared to have gained an increased tolerance to decreased pH based on the chlorophyll concentration of the algae.

Stress can be a driving force for new evolutionary changes leading to local adaptation, or may be responded to with pre-existing, ancestral tolerance mechanisms. Using brachionid rotifers (microzooplankton) as a study system, I demonstrate roles of both conserved physiological mechanisms (heat shock protein induction) and rapid evolution of traits in response to ecologically relevant stressors such as temperature and hydroperiod. Rapid evolution of higher levels of sex and dormancy in cultures mimicking temporary waters represents an eco-evolutionary dynamic, with trait evolution feeding back into effects on ecology (i.e., reduced population growth). I also reveal that prolonged culture in a benign laboratory environment leads to evolution of increased lifespan and fecundity, perhaps due to reduction of extrinsic mortality factors. Potential mechanisms (e.g., hormonal signals) are suggested that may control evolvability of facets of the stress response. Due to prior studies suggesting a role of progesterone signaling in rotifer sex and dormancy, the membrane associated progesterone receptor is assayed as a candidate gene that could show positive selection indicating rapid divergence. Despite some sequence variation that may contribute to functional differences among species, results indicate this hormone receptor is under purifying selection. Detailed analyses of multiple stress responses and their evolution as performed here will be imperative to understanding current patterns of local adaptation and trait-environment correlations. Such research also is key to predicting persistence of species upon introduction to novel habitats and exposure to new stressors (e.g., warming due to climate change). Perhaps one of the most intriguing results of this dissertation is the rapid, adaptive change in levels of sex and dormancy in a metazoan through new mutations or re-arrangements of the genetic material. This suggests species may be able to rapidly evolve tolerance of new stressors, even if standing genetic variation does not currently encompass the suite of alleles necessary for survival.