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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
21

Derivation and application of response functions for nonlinear absorption and dichroisms

Fahleson, Tobias January 2017 (has links)
This thesis explores and expands upon theoretical means of quantifying a number of nonlinear spectroscopies, including two-photon absorption, resonant-inelastic x-ray scattering, Jones birefringence, and magnetic circular dichroism. On top of that, detailed information is given for the derivation and program implementation of damped cubic response functions. Complex-valued cubic response functions have been implemented in the quantum chemistry package DALTON, based on working equations formulated for an approximate-state wave function. An assessment of the implementation, such that for small frequencies the second-order hyperpolarizability should behave according to an analytic function that depends quadratically on the optical frequencies. It is demonstrated how two-photon absorption (TPA) can be described either through second-order transition moments or via the damped cubic response function. A few calculated TPA profiles are produced for a set of smaller molecules, in order to display the capability of the cubic response function in the x-ray frequency region. Resonance-inelastic x-ray scattering (RIXS) is explored in a similar manner as two-photon absorption. It is shown how the second-order hyperpolarizability can represent RIXS in the limit of intermediate-state and final-state resonances. Complications emerging from the complex dispersion of the hyperpolarizability are discussed. Moreover, linear birefringences, with focus on the Jones birefringence, are investigated for noble gases, monosubstituted benzenes, furan homologues, and a pure acetonitrile liquid. A linear relation between the Jones birefringence and the empirical para-Hammett constant as well as the permanent electric dipole moment is presented. Estimations of three linear birefringences --- Kerr, Cotton--Mouton, and Jones ---are obtained by averaging over a set of liquid snapshots. The Jones effect for acetonitrile turns out to be unusually large inmparison to the other two investigated linear birefringences. The final chapter of the thesis investigates magnetically induced circular dichroism (MCD). A question regarding relative stability of the first set of excited states for DNA-related molecular systems is resolved through MCD by exploiting the signed nature of circular dichroisms. Furthermore, to what extent solvent contributions affect MCD spectra is explored. The effect on uracil MCD spectrum due to thionation is studied, for which the degree of redshifting for systems 2-thiouracil and 4-thiouracil can be seen to be addative as compared to the 2,4-dithiouracil system. / <p>QC 20171129</p>
22

Theoretical Spectroscopy of Ga2O3

Vorwerk, Christian Wolfgang 05 January 2021 (has links)
Um neue Halbleiter-Bauelemente zu entwickeln und die Effizienz bereits existierender zu verbessern, müssen neue Materialien erkundet und untersucht werden. Für Anwendungen in Hochleistungselektronik und UV-Optoelektronik ist Ga2O3 mit seiner ultra-weiten Bandlücke von 4.8 eV ein vielversprechender Kandidat. Diese Anwendung haben zu wachsendem Interesse an seinen fundamentalen elektronischen und optischen Eigenschaften geführt. Diese Dissertation präsentiert eine umfassende ab initio-Untersuchung der elektronischen Anregungen in Ga2O3, um zu dem Verständnis dieser fundamentalen Eigenschaften beizutragen. Die Arbeit besteht aus zwei Teilen: Im ersten Teil präsentieren wir eine Vielteilchen-Störungstheorie Methode zur konsistenten Berechnung der neutralen Anregungen von Valenz- und Kernelektronen in kristallinen Halbleitern. Diese ermöglicht die präzise Berechnung von Absorptions- und Streuungsspektren vom optischen bis zum Röntgenbereich. Zusätzlich präsentieren wir einen neuartigen Ausdruck für resonante inelastische Röntgenstreuung (RIXS) innerhalb unseres Vielteilchen-Formalismus, der eine detaillierte Analyse dieser Streuung erlaubt. Mit ausgewählten Beispielen demonstrieren wir das Potential unserer Implementation, die Spektren dieser verschiedenen spektroskopischen Methoden zu berechnen, zu analysieren und zu interpretieren. Im zweiten Teil der Dissertation verwenden wir unsere Methode, um die Anregungen der Valenzelektronen, sowie der Ga 1s-, Ga 2p- und O 1s-Elektronen in Ga2O3 zu berechnen. Wir finden ausgeprägte Unterschiede in den diversen Röntgenabsorptionsspektren von Ga2O3 -Polymorphen, die von der unterschiedlichen lokalen elektronischen Struktur stammen. Wir bestimmen die Zusammensetzung der Valenz- und Kernanregungen und analysieren ihre Signatur in den verschiedenen Absorptions- und Streuungsspektren. Abschließend demonstrieren wir wie RIXS einen zusätzlichen Blickwinkel auf die Valenz- und Kernanregungen und deren Wechselwirkungen ermöglicht. / To develop new semiconductor devices and improve the performance of existing ones, the exploration and understanding of novel materials is required. With an ultra-wide band gap of around 4.8 eV, Ga2O3 is a promising candidate for applications in UV-optoelectronics and power electronics. These applications have led to an increasing interest in its fundamental electronic and optical properties. In this thesis, we present a comprehensive first-principles study of the electronic excitations of Ga2O3 to contribute to the understanding of these fundamental properties. The thesis consists of two parts: In the first part, we present an all-electron many-body perturbation theory (MBPT) approach for consistent calculations of neutral core and valence excitations. It enables accurate calculation of absorption and inelastic scattering spectra in the optical, UV, and x-ray region. While these spectroscopic techniques probe either the valence or core excitations, resonant inelastic x-ray scattering (RIXS) reveals the interplay between the two. We present a novel expression for the RIXS cross section within our all-electron many-body formalism that allows for a detailed analysis of this interplay. We demonstrate the capability of our implementation to compute, analyze, and interpret the different spectroscopic techniques with selected examples of prototypical insulators. In the second part, we apply our approach to study valence excitations, as well as excitations of various core states, i.e. the gallium 1s, gallium 2p, and oxygen 1s states in Ga2O3 . Comparing the core spectra of Ga2O3 polymorphs, we find distinct differences that originate from their local environments. We determine the composition of valence and core excitons, and analyze their signatures in the various absorption and scattering spectra. Finally, we demonstrate how RIXS can be employed to provide a different viewpoint on the core and valence excitations and unravel the interplay between them.
23

Magnetic excitations and ordering phenomena in iridium compounds studied by synchrotron techniques

Kusch, Maximilian 05 May 2021 (has links)
In the investigation of correlated electron systems which are characterized by strong spin-orbit coupling, one of the central challenges is the description of the complex interplay of different microscopic energy scales and the elucidation of its influence on the formation of exotic electronic phases like complex ordering phenomena and superconductivity. In the present thesis, exemplary three case studies of iridium-based compounds are presented, in which the effects of such an interplay have been investigated employing state-of-the-art synchrotron-based techniques. The particular focus is set on experimental possibilities to influence this equilibrium utilizing external parameters. In the first study, magnetic excitations are investigated in iridate double perovskites, which exhibit a nonmagnetic ground state. Upon increasing the influence of kinetic contributions, the potential condensation of these excitations is predicted to drive a novel kind of magnetic transitions, called ’excitonic magnetism’. A comprehensive investigation of the dynamics of these excitations via resonant inelastic x-ray scattering allows for an estimation of the relevant energy scales. These results indeed reveal that the influence of kinetic contributions is too small to drive such a transition under ambient conditions. Therefore the influence of excitonic magnetism on the macroscopic properties of the investigated compounds can be excluded. In the second case, the development of a new experimental setup is presented, facilitating the investigation of complex ordering phenomena at low temperatures as a function of pressure via resonant elastic x-ray scattering. This setup has been developed and implemented as part of this work in strong collaboration with the staff of the beamline P09 at the synchrotron PETRAIII (DESY). The functionality of this setup has been illustrated by measurements of the resonant magnetic x-ray scattering in the spin-orbit coupled Mott-insulator Sr 2IrO4. Since the magnetic ground state and magnetic order in iridates result from a complex interplay of different microscopic energy scales, these systems are particularly susceptible to external influences like hydrostatic pressure. In the third case, structural phase transitions are investigated in the iridium-based dichalcogenide IrTe2. Despite the macroscopic itinerant properties of IrTe2, the phase transitions are characterized by the formation of strongly localized states. These transitions have been investigated in the course of this work using single crystal x-ray diffraction experiments as a function of hydrostatic pressure and temperature. The presented experimental data show that these strongly localized states are stabilized with increasing pressure, which is observed as an increased density of Ir-Ir dimer bonds.
24

j = 3/2 Quantum spin-orbital liquids / Líquidos spin-orbitais quânticos j = 3/2

Natori, Willian Massashi Hisano 17 August 2018 (has links)
Quantum spin liquids (QSLs) are strongly correlated systems displaying fascinating phenomena like long-range entanglement and fractionalized excitations. The research on these states has since its beginning followed trends generated by the synthesis of new compounds and the construction of new theoretical tools. In coherence with this history, a manifold of new results about QSLs were established during the past decade due to studies on the integrable Kitaev model on the honeycomb lattice. This j = 1/2 model displays bond-dependent and anisotropic exchanges that are essential to stabilize its QSL ground state with Majorana fermion excitations and emergent Z2 gauge field. Even more interestingly, this model is relevant to understand the magnetism of a certain class of 4/5d5 Mott insulators with specific lattice constraints, t2g orbital degeneracy and strong spin-orbit coupling (SOC). This mechanism defining these so-called Kitaev materials can be applied to similar compounds based on transition metal ions in different electronic configurations. In this thesis, I investigate minimal models for two types of 4/5d1 Mott insulators: the ones on the ordered double perovskite structure (ODP) and the ones isostructural to the Kitaev materials. Their effective models generically show bond-dependent and anisotropic interactions involving multipoles of an effective j = 3/2 angular momentum. Such degrees of freedom are conveniently written in terms of pseudospin s and pseudo-orbital &tau; operators resembling spin and orbital operators of Kugel-Khomskii models with twofold orbital degeneracy. Despite their anisotropy, the two realistic models display continuous global symmetries in the limit of vanishing Hund\'s coupling enhancing quantum fluctuations and possibly stabilizing a QSL phase. Parton mean-field theory was used to propose fermionic QSLs that will be called quantum spin-orbital liquids (QSOLs) due their dependence with s and &tau;. On ODPs, I studied a chiral QSOL with Majorana fermion excitations and a gapless spectrum characterized by nodal lines along the edges of the Brillouin zone. These nodal lines are topological defects of a non-Abelian Berry connection and the system exhibits dispersing surface states. Several experimental responses of the chiral QSOL within the mean-field approximation are compared with the experimental data available for the spin liquid candidate Ba2YMoO6. Moreover, based on a symmetry analysis, I discuss the operators involved in resonant inelastic X-ray scattering (RIXS) amplitudes for 4/5d1 Mott insulators and show that the RIXS cross sections allow one to selectively probe pseudospin and pseudo-orbital degrees of freedom. For the chiral spin-orbital liquid in particular, these cross sections provide information about the spectrum for different flavors of Majorana fermions. The model for materials isostructural to the Kitaev materials has an emergent SU(4) symmetry that is made explicit by means of a Klein transformation on pseudospin degrees of freedom. The model is known to stabilize a QSOL on the honeycomb lattice and instigated the investigation of QSOLs on a generalization of this lattice to three dimensions. Parton mean-field theory was used once again to propose the liquid states, and a variational Monte Carlo (VMC) method was used to compute the energies of the projected wave functions. The numerical results show that the lowest-energy QSOL corresponds to a zero-flux state with a Fermi surface of four-color fermionic partons. Further VMC computations also revealed that this state is stable against formation of plaquette ordering (tetramerization). The energy of this QSOL is highly competitive even when Hund\'s coupling induced perturbations are included, as shown by comparison with simple ordered states. Extensions and perspectives for future work are discussed in the end of this thesis. / Líquidos de spin quânticos (QSLs) são sistemas fortemente correlacionados que apresentam fenômenos fascinantes como emaranhamento de longo alcance e excitações fracionárias. A pesquisa a respeito destes estados seguiu tendências geradas pela síntese de novos compostos e construção de novas técnicas teóricas desde seu princípio. Coerentemente com essa história, uma variedade de novos resultados a respeito de líquidos de spin foram estabelecidos na última década graças a estudos feitos sobre o modelo integrável de Kitaev na rede colmeia. Este modelo de spins j = 1/2 apresenta interações de troca anisotrópicas e direcionalmente dependentes que são essenciais para estabilizar um estado fundamental do tipo QSL com férmions de Majorana e campo de gauge Z2 emergente. Ainda mais interessante, este modelo é relevante para se entender o magnetismo de uma certa classe de isolantes de Mott baseados em metais de transição na configuração 4/5d5 em redes específicas, degenerescência orbital t2g e acoplamento spin-órbita forte (SOC). Esse mecanismo que define os chamados materiais do tipo Kitaev podem ser aplicados a compostos baseados em metais de transição em configurações eletrônicas diferentes. Nesta tese, eu investigo modelos mínimos para dois tipos de isolantes de Mott do tipo 4/5d1: os que se apresentam na estrutura perovskita dupla ordenada (ODP) e os isostruturais aos materiais do tipo Kitaev. Seus modelos efetivos genericamente apresentam interações multipolares anisotrópicas e direcionalmente dependentes de um momento angular efetivo j = 3/2. Estes graus de liberdade são convenientemente escritos em termos de operadores de pseudospin s e pseudo-orbital &tau; semelhantes a operadores de spin e orbital de modelos do tipo Kugel-Khomskii com orbitais duplamente degenerados. A despeito da anisotropia, esses dois modelos realísticos apresentam simetrias globais contínuas no limite de acoplamento de Hund nulo que incrementam flutuações quânticas e possivelmente estabilizam uma fase do tipo QSL. A teoria de campo médio com partons foi usada para propor QSLs fermiônicos que serão chamados de líquidos spin-orbitais quânticos (QSOLs) devido à dependência deles com s e &tau;. Em ODPs, eu estudei um líquido de spin quiral com excitações do tipo férmion de Majorana e um espectro sem gap caracterizado por linhas nodais ao longo das arestas da zona de Brillouin. Essas linhas nodais são defeitos topológicos de uma conexão de Berry não-abeliana e o sistema apresenta estados de superfície dispersivos. Várias respostas experimentais foram calculadas para o QSOL quiral dentro da aproximação de campo médio e comparadas com os dados experimentais disponíveis para o candidato a líquido de spin Ba2YMoO6. Além disso, baseado em uma análise de simetria, discuto os operadores envolvidos nas amplitudes de espalhamento de raios-x ressonante para isolantes de Mott na configuração 4/5d1 e mostro que seções de choque de RIXS permitem estudar seletivamente os graus de liberdade de pseudospins e pseudo-orbitais. Para o caso particular do líquido spin-orbital quiral, essas seções de choque nos fornecem informações sobre o espectro de diferentes sabores de férmions de Majorana. Esse modelo possui uma simetria SU(4) emergente que é tornada explícita através de uma transformações de Klein nos graus de liberdade de pseudospin. Sabe-se que este modelo estabiliza um QSOL na rede colmeia, o que instigou uma investigação de QSOLs na generalização desta rede em três dimensões. A teoria de campo médio com partons foi usada novamente para propor estes líquidos quânticos, e o método de Monte Carlo Variacional (VMC) foi usado para calcular as energias das funções de onda projetadas. Os resultados numéricos mostraram que o QSOL de menor energia corresponde a um estado de fluxo-zero com superfície de Fermi envolvendo partons fermiônicos de quatro cores. Cálculos adicionais com VMC também demonstraram que este estado é estável à formação de ordem de plaquetas (tetramerização). A energia deste QSOL é altamente competitiva mesmo quando perturbações induzidas pelo acoplamento de Hund são incluídas, o que é mostrado através da comparação com estados ordenados simples. Extensões e perspectivas para trabalhos futuros são discutidas no final desta tese.
25

Dynamics and thermal behaviour of films of oriented DNA fibres investigated using neutron scattering and calorimetry techniques

Valle Orero, Jessica 26 June 2012 (has links) (PDF)
The majority of structural studies on DNA have been carried out using fibre diffraction, while studies of its dynamics and thermal behaviour have been mainly performed in solution. When the DNA double helix is heated, it exhibits local separation of the two strands that grow in size with temperature and lead to their complete separation. This work has investigated various aspects of this phenomenon. The experiments reported in this thesis were carried out on films of oriented fibres of DNA prepared with the Wet Spinning Apparatus. Thus, sample preparation and characterisation are essential parts of the research. The structures of two forms of DNA, A and B, have been explored as a function of relative humidity at fixed ionic conditions. A method to eliminate traces of ever-present B-form contamination in A-form samples was established. The high orientation of the DNA molecules within the samples allowed us to investigate dynamical fluctuations and the melting transition of DNA using neutron scattering, which can provide the spatial information crucial to understand a phase transition, probing the static correlation length along the molecule as a function of temperature. The transition has been investigated for A and B-forms in order to understand its dependence on molecular configuration.Furthermore, after the first melting, denatured DNA films show typical glass behaviour. Their thermal relaxation has been explored using calorimetry.Neutron and X-ray inelastic scattering (INS and IXS) were used in the past to measure longitudinal phonons in fibre DNA, and the results shown disagreement. Recent INS measurements supported with phonon simulations have been crucial to understand the different dispersion curves reported to date. Experiments using INS and IXS have been carried out to continue with this investigation. Attempts to observe the transverse fluctuations associated to the thermal denaturing of DNA, never experimentally investigated before, have been made.
26

j = 3/2 Quantum spin-orbital liquids / Líquidos spin-orbitais quânticos j = 3/2

Willian Massashi Hisano Natori 17 August 2018 (has links)
Quantum spin liquids (QSLs) are strongly correlated systems displaying fascinating phenomena like long-range entanglement and fractionalized excitations. The research on these states has since its beginning followed trends generated by the synthesis of new compounds and the construction of new theoretical tools. In coherence with this history, a manifold of new results about QSLs were established during the past decade due to studies on the integrable Kitaev model on the honeycomb lattice. This j = 1/2 model displays bond-dependent and anisotropic exchanges that are essential to stabilize its QSL ground state with Majorana fermion excitations and emergent Z2 gauge field. Even more interestingly, this model is relevant to understand the magnetism of a certain class of 4/5d5 Mott insulators with specific lattice constraints, t2g orbital degeneracy and strong spin-orbit coupling (SOC). This mechanism defining these so-called Kitaev materials can be applied to similar compounds based on transition metal ions in different electronic configurations. In this thesis, I investigate minimal models for two types of 4/5d1 Mott insulators: the ones on the ordered double perovskite structure (ODP) and the ones isostructural to the Kitaev materials. Their effective models generically show bond-dependent and anisotropic interactions involving multipoles of an effective j = 3/2 angular momentum. Such degrees of freedom are conveniently written in terms of pseudospin s and pseudo-orbital &tau; operators resembling spin and orbital operators of Kugel-Khomskii models with twofold orbital degeneracy. Despite their anisotropy, the two realistic models display continuous global symmetries in the limit of vanishing Hund\'s coupling enhancing quantum fluctuations and possibly stabilizing a QSL phase. Parton mean-field theory was used to propose fermionic QSLs that will be called quantum spin-orbital liquids (QSOLs) due their dependence with s and &tau;. On ODPs, I studied a chiral QSOL with Majorana fermion excitations and a gapless spectrum characterized by nodal lines along the edges of the Brillouin zone. These nodal lines are topological defects of a non-Abelian Berry connection and the system exhibits dispersing surface states. Several experimental responses of the chiral QSOL within the mean-field approximation are compared with the experimental data available for the spin liquid candidate Ba2YMoO6. Moreover, based on a symmetry analysis, I discuss the operators involved in resonant inelastic X-ray scattering (RIXS) amplitudes for 4/5d1 Mott insulators and show that the RIXS cross sections allow one to selectively probe pseudospin and pseudo-orbital degrees of freedom. For the chiral spin-orbital liquid in particular, these cross sections provide information about the spectrum for different flavors of Majorana fermions. The model for materials isostructural to the Kitaev materials has an emergent SU(4) symmetry that is made explicit by means of a Klein transformation on pseudospin degrees of freedom. The model is known to stabilize a QSOL on the honeycomb lattice and instigated the investigation of QSOLs on a generalization of this lattice to three dimensions. Parton mean-field theory was used once again to propose the liquid states, and a variational Monte Carlo (VMC) method was used to compute the energies of the projected wave functions. The numerical results show that the lowest-energy QSOL corresponds to a zero-flux state with a Fermi surface of four-color fermionic partons. Further VMC computations also revealed that this state is stable against formation of plaquette ordering (tetramerization). The energy of this QSOL is highly competitive even when Hund\'s coupling induced perturbations are included, as shown by comparison with simple ordered states. Extensions and perspectives for future work are discussed in the end of this thesis. / Líquidos de spin quânticos (QSLs) são sistemas fortemente correlacionados que apresentam fenômenos fascinantes como emaranhamento de longo alcance e excitações fracionárias. A pesquisa a respeito destes estados seguiu tendências geradas pela síntese de novos compostos e construção de novas técnicas teóricas desde seu princípio. Coerentemente com essa história, uma variedade de novos resultados a respeito de líquidos de spin foram estabelecidos na última década graças a estudos feitos sobre o modelo integrável de Kitaev na rede colmeia. Este modelo de spins j = 1/2 apresenta interações de troca anisotrópicas e direcionalmente dependentes que são essenciais para estabilizar um estado fundamental do tipo QSL com férmions de Majorana e campo de gauge Z2 emergente. Ainda mais interessante, este modelo é relevante para se entender o magnetismo de uma certa classe de isolantes de Mott baseados em metais de transição na configuração 4/5d5 em redes específicas, degenerescência orbital t2g e acoplamento spin-órbita forte (SOC). Esse mecanismo que define os chamados materiais do tipo Kitaev podem ser aplicados a compostos baseados em metais de transição em configurações eletrônicas diferentes. Nesta tese, eu investigo modelos mínimos para dois tipos de isolantes de Mott do tipo 4/5d1: os que se apresentam na estrutura perovskita dupla ordenada (ODP) e os isostruturais aos materiais do tipo Kitaev. Seus modelos efetivos genericamente apresentam interações multipolares anisotrópicas e direcionalmente dependentes de um momento angular efetivo j = 3/2. Estes graus de liberdade são convenientemente escritos em termos de operadores de pseudospin s e pseudo-orbital &tau; semelhantes a operadores de spin e orbital de modelos do tipo Kugel-Khomskii com orbitais duplamente degenerados. A despeito da anisotropia, esses dois modelos realísticos apresentam simetrias globais contínuas no limite de acoplamento de Hund nulo que incrementam flutuações quânticas e possivelmente estabilizam uma fase do tipo QSL. A teoria de campo médio com partons foi usada para propor QSLs fermiônicos que serão chamados de líquidos spin-orbitais quânticos (QSOLs) devido à dependência deles com s e &tau;. Em ODPs, eu estudei um líquido de spin quiral com excitações do tipo férmion de Majorana e um espectro sem gap caracterizado por linhas nodais ao longo das arestas da zona de Brillouin. Essas linhas nodais são defeitos topológicos de uma conexão de Berry não-abeliana e o sistema apresenta estados de superfície dispersivos. Várias respostas experimentais foram calculadas para o QSOL quiral dentro da aproximação de campo médio e comparadas com os dados experimentais disponíveis para o candidato a líquido de spin Ba2YMoO6. Além disso, baseado em uma análise de simetria, discuto os operadores envolvidos nas amplitudes de espalhamento de raios-x ressonante para isolantes de Mott na configuração 4/5d1 e mostro que seções de choque de RIXS permitem estudar seletivamente os graus de liberdade de pseudospins e pseudo-orbitais. Para o caso particular do líquido spin-orbital quiral, essas seções de choque nos fornecem informações sobre o espectro de diferentes sabores de férmions de Majorana. Esse modelo possui uma simetria SU(4) emergente que é tornada explícita através de uma transformações de Klein nos graus de liberdade de pseudospin. Sabe-se que este modelo estabiliza um QSOL na rede colmeia, o que instigou uma investigação de QSOLs na generalização desta rede em três dimensões. A teoria de campo médio com partons foi usada novamente para propor estes líquidos quânticos, e o método de Monte Carlo Variacional (VMC) foi usado para calcular as energias das funções de onda projetadas. Os resultados numéricos mostraram que o QSOL de menor energia corresponde a um estado de fluxo-zero com superfície de Fermi envolvendo partons fermiônicos de quatro cores. Cálculos adicionais com VMC também demonstraram que este estado é estável à formação de ordem de plaquetas (tetramerização). A energia deste QSOL é altamente competitiva mesmo quando perturbações induzidas pelo acoplamento de Hund são incluídas, o que é mostrado através da comparação com estados ordenados simples. Extensões e perspectivas para trabalhos futuros são discutidas no final desta tese.
27

Dynamics and thermal behaviour of films of oriented DNA fibres investigated using neutron scattering and calorimetry techniques / Dynamique et comportement thermique des films de fibres orientées d'ADN étudiés par les techniques de diffusion de neutrons et calorimétrie

Valle Orero, Jessica 26 June 2012 (has links)
La majorité des études structurales sur l’ADN avaient été réalisées par diffraction sur des fibres tandis que ses propriétés dynamiques thermiques avaient été étudiées en solution. Lorsque la double hélice d’ADN est chauffée elle présente des séparations locales des deux brins, dont la taille augmente avec la température jusqu’à la séparation complète des brins. Ce travail étudie différents aspects de ce phénomène. Les expériences présentées dans cette thèse ont été réalisées sur des films formés de fibres orientées d’ADN préparés par la méthode du ”filage humide“. La préparation et la caractérisation des échantillons en deux formes A et B de l’ADN ont constitué une partie importante de la recherche. Une méthode pour éliminer la contamination résiduelle de la forme B dans les échantillons de forme A a été mise au point. La bonne orientation des molécules d’ADN dans les échantillons nous a permis d’étudier les fluctuations dynamiques et la transition de dénaturation thermique de l’ADN par diffraction de neutrons, sensibles à la longueur de corrélation statique le long de la molécule en fonction de la température. La transition a été étudiée pour les formes A et B pour déterminer comment elle dépend de la conformation. De plus, après la première dénaturation thermique, les films d’ADN présentent un comportement typique d’un verre. Leur relaxation thermique a été étudiée par calorimétrie. La diffusion inélastique de neutrons et de rayons X (INS et IXS) avaient été utilisées antérieurement pour mesurer les phonons longitudinaux dans des fibres d’ADN, avec des désaccords entre les résultats. Des mesures INS récentes, complétées par des simulations, avaient été cruciales pour comprendre les différentes courbes de dispersion observées. Nous avons mené des expériences INS et IXS pour poursuivre cette analyse. Des tentatives pour observer les mouvements transversaux associés à la dénaturation thermique de l’ADN, jamais observés expérimentalement, ont également été faites. / The majority of structural studies on DNA have been carried out using fibre diffraction, while studies of its dynamics and thermal behaviour have been mainly performed in solution. When the DNA double helix is heated, it exhibits local separation of the two strands that grow in size with temperature and lead to their complete separation. This work has investigated various aspects of this phenomenon. The experiments reported in this thesis were carried out on films of oriented fibres of DNA prepared with the Wet Spinning Apparatus. Thus, sample preparation and characterisation are essential parts of the research. The structures of two forms of DNA, A and B, have been explored as a function of relative humidity at fixed ionic conditions. A method to eliminate traces of ever-present B-form contamination in A-form samples was established. The high orientation of the DNA molecules within the samples allowed us to investigate dynamical fluctuations and the melting transition of DNA using neutron scattering, which can provide the spatial information crucial to understand a phase transition, probing the static correlation length along the molecule as a function of temperature. The transition has been investigated for A and B-forms in order to understand its dependence on molecular configuration.Furthermore, after the first melting, denatured DNA films show typical glass behaviour. Their thermal relaxation has been explored using calorimetry.Neutron and X-ray inelastic scattering (INS and IXS) were used in the past to measure longitudinal phonons in fibre DNA, and the results shown disagreement. Recent INS measurements supported with phonon simulations have been crucial to understand the different dispersion curves reported to date. Experiments using INS and IXS have been carried out to continue with this investigation. Attempts to observe the transverse fluctuations associated to the thermal denaturing of DNA, never experimentally investigated before, have been made.

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