Western honey bees (Apis mellifera; hereafter honey bees) provide vital pollination services to global agriculture and biodiversity. However in recent years they have experienced severe population declines in many regions of the northern hemisphere. Although causes of these honey bee declines are not well understood, multiple pressures such as changes in land-use and climate, management issues, and introduced parasites are believed to be responsible. First described in honey bees in 2006 during a period of high colony mortalities, the microsporidian gut parasite Nosema ceranae became of great concern. In this dissertation I investigated the distribution, management, virulence, and inter-specific interactions of this introduced species. First, I described and clarified the multiple pressures believed to influence honey bee health, including N. ceranae, especially in relation to the mysterious phenomenon Colony Collapse Disorder. I then surveyed colonies in Maritime Canada for N. ceranae and the historic honey bee microsporidian Nosema apis. Although both species were present at a regional scale, intensive sampling in Nova Scotia revealed that N. ceranae was highly prevalent compared to the historic congener. Next, I investigated two potential management options for the parasite. Chemotherapy using the fungicide fumagillin reduced N. ceranae spore intensity but had no effect on colony survival, and indoor over-wintering did not reduce spore intensity but was associated with increased colony survivorship in spring. Using a comparative approach, I observed that N. ceranae infection significantly reduced honey bee longevity in the laboratory but did not influence overall colony health or strength in the field. Last, a laboratory study demonstrated reduced spore production during N. ceranae and N. apis co-infection, possibly due to inter-specific competition that has resulted in the displacement of the historic Nosema species by N. ceranae in many global regions. This dissertation provides crucial information on biology and management of N. ceranae that can be used towards the development of an integrated pest management strategy, and for future studies investigating factors that may influence the parasite’s distribution, virulence, and inter-specific interactions.

Social behaviour is shaped by complex relationships between evolutionary and ecological processes interacting at different scales. Benefits gained from social associations can range from predator dilution to collective sensing, but little is known about how these can be influenced by social structure and phenotypic composition. In this thesis, I investigated how individual decision-making affects phenotypic social structure, and how this mediates social behaviour through emergent properties of collective group behaviour. First, using mixed-species flocks as a model system, I showed individual tits (Paridae, chapter 2) and thornbills (Acanthizae, chapter 3) varied significantly in their social positions. Within-species variation in network position was as large as between-species variation, sug- gesting that prescribing functional roles at the species level may not sufficiently account for potential differences in fitness operating at the individual level. Rather, this suggested that structure may be driven by phenotypic traits, underpinning network structure (chapter 4). Next, I used an extensive data set of foraging records to explore factors determining the composition, of flocks of great tits (Parus major, chapter 5). For example, assortment by dispersal phenotype (immigration status) was the result of spatial disaggregation, and I showed that this may facilitate social selection for breeding territories (chapter 6). Finally, I investigated how decision-making shaped mixed-species social structure. I found that tits used a common strategy for managing pressures of predation and starvation by shifting from exploration to exploitation at different times of the day (chapter 7). I then found that a very simple interaction rule successfully replicated mixed-species group structure (chapter 8). Strikingly, the same rule was applied to both conspecifics and het- erospecifics, potentially playing an important role in the maintenance of flock structure. Through experimental manipulation of ecological conditions, I found that heightened per- ceived predation resulted in stronger social attraction overall, whereas increased competition led to a reduction in attraction to conspecifics (chapter 9). Simulations suggested this could be one potential mechanism underpinning fission-fusion dynamics in these species. Together, the results in this thesis form a framework linking social behaviour to individ- ual fitness where natural selection is shaped by the social environment. This approach may prove useful for testing whether following common social rules reduces variance in benefits accrued by individuals, and how within-species variation in social behaviour can impact emergent properties of groups.

Thesis (PhD (Conservation Ecology and Entomology))--Stellenbosch University, 2008. / ENGLISH ABSTRACT: Shifts in species ranges are an important consequence of climate change, and can affect the composition, structure and functioning of ecosystems. Generally, in response to rising temperatures, species have increased their altitudinal and latitudinal distributions along their cooler boundaries, although there has been large variation between species. However, in addition to climatic factors, species range limits are also sensitive to biotic interactions. Therefore, interspecific interactions may be able to influence the impact of climate change on species distributions. In this thesis climate change, range shifts and spatial variation in plant-plant interactions are documented to examine the potential for biotic interactions to mediate climate-driven altitudinal range shifts on sub-Antarctic Marion Island. The climate on Marion Island changed considerably between 1949 and 2003, with significant trends in biologically-relevant parameters encompassing average climatic conditions, variability in climate parameters and extreme weather events. Combining these trends showed that while environmental conditions have ameliorated for some species, they have become more abiotically stressful for others (e.g. hygrophilous species). Concurrent with changes in the island’s climate, there have been rapid changes in the elevational distribution of Marion Island’s native vascular flora. On average species ranges expanded upslope (as predicted in response to the warming experienced on the island), although individual range expansion rates varied greatly. As a result of the idiosyncratic expansion rates, altitudinal patterns of species richness and community composition changed considerably. Therefore, both speciesand community-level changes occurred in the flora of Marion Island, demonstrating the community’s sensitivity to climate change. To determine the potential for interspecific interactions to have mediated these changes in species elevational ranges, spatial variation in the balance of positive and negative plant-plant interactions were examined. Increasing spatial association between four dominant species along an altitudinal severity gradient suggested that the intensity of facilitation, relative to the intensity of competition, is greater under more severe conditions. While, interaction strength varied between species pairs, the nature of relationship was consistent across the species. At a broader spatial scale, the performance of the grass Agrostis magellanica was compared in the presence and in the absence of the cushion plant Azorella selago along the entire altitudinal range of both species. The influence of the cushion plant on A. magellanica switched from negative to positive with increasing environmental severity, reaching a positive asymptote under extreme environmental conditions. Therefore, on Marion Island the spatial variation in the nature of biotic interactions is related to environmental severity, and facilitative interactions can be strong under extreme environmental conditions. These results show that positive biotic interactions are important at higher elevations on Marion Island, and could thus accelerate upslope range expansions in response to climate change. Nonetheless, competitive inhibition of upslope species movement, especially in areas of dense vegetation (i.e. mid or low altitudes), could have the opposite result, acting antagonistically with the effect of rising temperatures. This research highlights the importance of considering interspecific interactions when examining the biotic implications of climate change, both for affecting the rate at which species ranges change and the extent of species distributions. / AFRIKAANSE OPSOMMING: Die verskuiwing van spesies se verspreidingspatrone is ‘n belangrike gevolg van klimaatsverandering en kan die samestelling, struktuur en funksionering van ekosisteme affekteer. Oor die algemeen, in reaksie op verwarming, kom spesies op hoër hoogtes bo seespieël en hoër breedtegrade voor, alhoewel daar groot verskille tussen spesies in hierdie aspek is. Behalwe vir klimatologiese faktore, is spesies se verspreidingslimiete ook sensitief vir biotiese interaksies met ander spesies. Daarom kan interaksies tussen spesies die effek van klimaatsverandering op spesiesverspreiding verder beïnvloed. In hierdie verhandeling word klimaatsverandering, verandering in verspreiding van spesies en geografiese variasie in plant-plant interaksies ondersoek. Dit word gedoen ten einde die moontlikheid te toets dat biotiese interaksies die verandering in verspreidingspatrone van klimaat gedrewe spesies op sub-Antarktiese Marion Eiland beïnvloed. Marion Eiland se klimaat het aansienlik tussen 1949 en 2003 verander, met betekenisvolle neigings in biologies-relevante parameters, insluitend gemiddelde klimaatstoestande, variasie in klimaat en uiterste weerstoestande. As die veranderinge saam beskou word, wys dit dat, terwyl omgewingstoestande vir sommige spesies verbeter het, toestande vir ander spesies abioties meer ongunstig geword het (bv. akwatiese plantsoorte). Tesame met die veranderinge in die eiland se klimaat, het die hoogte bo seespieël verspreiding van Marion Eiland se inheemse vaatplante vinnig verander. Gemiddeld het spesies-verspreiding se hoogte bo seespieël na hoër hoogtes verskuif (soos voorspel in reaksie op verwarming), alhoewel die tempo van verskuiwing na hoër hoogtes tussen spesies verskil het. As gevolg van hierdie idiosinkratiese reaksies, het die aantal en samestelling van plant spesies op verskillende hoogtes op die eiland aansienlik verander. Die sensitiwiteit van Marion Eiland se flora ten opsigte van klimaatsverandering word deur hierdie verandering gedemonstreer. Om te bepaal of die interaksies tussen spesies verspreidingspatrone kan beïnvloed, is die geografiese variasie in die balans van positiewe en negatiewe interaksies ondersoek. Vier dominante vaatplante het meer geassosieerd geraak hoe hoër hulle bo seespieël voorgekom het. Dit is ‘n aanduiding dat die sterkte van die positiewe interaksies (fasilitering), relatief tot die sterkte van die negatiewe reaksie (kompetisie), groter onder uiterste omgewingstoestande is. Die sterkte van die interaksie het verskil tussen spesies pare, maar die verhouding tussen omgewingstoestande en die sterkte van die interaksie was dieselfde vir alle spesies. Op ‘n breër geografiese vlak is die opbrengs van die gras Agrostis magellanica in die teenwoordigheid en afwesigheid van die polsterplant Azorella selago op alle hoogtes waar die plante saam voorkom vergelyk. Die invloed van A. selago op A. magellanica was negatief op lae hoogtes bo seespieël, maar het meer positief geraak met ‘n toename in hoogte bo seespieël, tesame met omgewingshardheid. Die invloed van die polsterplant op die gras het ‘n positiewe asimptoot onder uiterste omgewingstoestande bereik. Dus, op Marion Eiland is die geografiese variasie in biotiese interaksies verwant aan omgewingstoestande, en positiewe interaksies kan selfs onder die uiterste omgewingstoestande sterk wees. Hierdie resultate wys dat positiewe biotiese interaksies tussen plante belangrik is by hoër hoogtes bo seespieël op Marion Eiland. Die interaksies kan dus die opwaartse verspreiding van spesies in reaksie op klimaatsverandering versnel. Nogtans kan negatiewe interaksies die teenoorgestelde effek hê aangesien kompetisie tussen plante, veral in plekke met digte plantegroei (d.w.s. lae of middel hoogtes bo seespieël) opwaartse verskuiwing van spesies kan verhinder. Hierdie navorsing dui aan hoe belangrik dit is om interaksies tussen spesies in ag te neem, aangesien die interaksies die tempo en omvang van veranderinge in verspreiding kan beïnvloed.

Submitted by Franciele Moreira (francielemoreyra@gmail.com) on 2018-04-11T11:57:10Z No. of bitstreams: 2 Dissertação - Lucas Pereira Martins - 2018.pdf: 2113878 bytes, checksum: 4c38a4d425f42506d50aa62bf6661c3f (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2018-04-12T11:22:54Z (GMT) No. of bitstreams: 2 Dissertação - Lucas Pereira Martins - 2018.pdf: 2113878 bytes, checksum: 4c38a4d425f42506d50aa62bf6661c3f (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Made available in DSpace on 2018-04-12T11:22:54Z (GMT). No. of bitstreams: 2 Dissertação - Lucas Pereira Martins - 2018.pdf: 2113878 bytes, checksum: 4c38a4d425f42506d50aa62bf6661c3f (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2018-03-15 / Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPq / Understanding how species interact with each other is essential to advance our knowledge on community ecology. However, there are still gaps regarding how interspecific interactions affect and are affected by the variation in the composition of species that constitute the ecological networks. In particular, studies of beta diversity are interesting to understand how sets of biotic filters may affect species’ geographic distribution and persistence on communities. Another interesting question is if variations in species composition may cause changes on how ecological networks are structured. In this dissertation, we propose to evaluate patterns of beta diversity and structure on insect-plant interaction networks. Specifically, in the first chapter we aimed to test if beta diversity is affected by the trophic level to which the assemblage belongs, and by the degree of specialization of species at higher trophic levels to their host species. For this, we used a tritrophic system comprising plants of the family Asteraceae, endophagous herbivores and parasitoids sampled in remnants of Brazilian Cerrado. Our main results show that total beta diversity of parasitoids (higher trophic level) was lower than those of the other trophic levels, while there was no difference between total beta diversity of plants and herbivores. Furthermore, the degree of specialization of the assemblages of herbivores and parasitoids was positively associated to the beta diversity of these groups. In the second chapter, we evaluated if species beta diversity among sites affects dissimilarity in network structure, and if this relationship changes across time. Overall, the relationship between spatial beta diversity and dissimilarity in plant-herbivore network structure was context-dependent, thus indicating that different ecological processes (i.e., niche-based and neutral) may drive the organization of antagonistic networks across time. / Compreender como as espécies interagem entre si é essencial para avançar o nosso conhecimento em ecologia de comunidades. No entanto, ainda existem lacunas no que se refere a como interações interespecíficas influenciam e são influenciadas pela variação na composição de espécies que constituem as redes ecológicas. Em particular, estudos de diversidade beta são interessantes para entender como conjuntos de filtros bióticos podem influenciar a distribuição geográfica e persistência de espécies nas comunidades. Outra questão interessante é se variações na composição de espécies podem causar mudanças no modo como redes ecológicas são estruturadas. Nesta dissertação, propomos avaliar padrões de diversidade beta e estrutura de redes de interações inseto-planta. Especificamente, no primeiro capítulo visamos testar se a diversidade beta é influenciada pelo nível trófico ao qual a assembleia pertence, e pelo grau de especialização de espécies de níveis tróficos superiores às suas espécies hospedeiras. Para isso, utilizamos um sistema tritrófico composto por plantas da família Asteraceae, herbívoros endófagos e parasitoides amostrado em remanescentes de Cerrado brasileiro. Nossos principais resultados demonstram que a diversidade beta total de parasitoides (nível trófico superior) foi menor do que a dos demais níveis tróficos, enquanto que não houve diferença entre a diversidade beta total de plantas e herbívoros. Além disso, o grau de especialização das assembleias de herbívoros e parasitoides foi positivamente relacionado à diversidade beta destes grupos. No segundo capítulo, avaliamos se a diversidade beta de espécies entre locais influencia a dissimilaridade na estrutura de redes ecológicas, e se esta relação muda através do tempo. De modo geral, a relação entre diversidade beta espacial e dissimilaridade na estrutura de redes planta-herbívoro foi contexto-dependente, indicando assim que diferentes processos ecológicos (i.e., baseados em nicho e neutros) podem determinar a organização de redes antagonistas através do tempo.

Rodents often colonise agricultural lands and become pests that cause economic loss and crop damage. Eradicating or regulating pest numbers has economic and environmental costs and has always been of great interest to farmers and nature conservationists. To reduce rodent numbers poison baits are used more often than biological control. However, poisoning has adverse environmental impacts and ignores the underlying biological factors that influence pest abundance. This study examined the interactions of the common rat species of oil palm plantations, namely Rattus rattus diardii, R. argentiventer and R. tiomanicus, with their food resource, habitat structure and introduced predators in an attempt to provide a better understanding and approach for their control. To investigate the interrelationships among rodents, owls and oil palms, rodent trapping was conducted simultaneously with pellet collection and assessment of the breeding of owls over six study plots and seven trapping intervals in one oil palm plantation. Trapping records suggested that relative abundances of rodent species differed in plots with palms of differing ages. There were more R. r. diardii as a proportion of the total captures in older palms (seven years old) while R. argentiventer was the most common rat captured in younger palms (three years old). The abundance of R. tiomanicus remained low throughout trapping sessions for palms of all ages. A numerical response of rats to fruit availability in older palms was demonstrated by a positive and significant correlation between the numbers of fruit bunches present and the total number of rats captured. This relationship was observed in both older and younger palms only for R. argentiventer but not R. r. diardii or R. tiomanicus in either age of palms. This suggests that the competitiveness of R. argentiventer may be higher than that of the other two species providing that there were no factors other than food availability that limit the numbers of other two species. However, the levels of damage to palm fruit were significantly correlated with the relative abundance of R. argentiventer only in younger palms, not in older ones where R. r. diardii were more abundant. The more terrestrial nature of R. argentiventer may have restricted their acquisition of food when the palms became taller. In addition to differences in feeding niche, habitat heterogeneity may also be important in determining the rat species compositions at different ages of palms. Vegetation cover may act as a refuge for rats; the overall occurrence of rats, and especially R. argentiventer, was positively correlated with vegetation cover and height, and even certain vegetation associations. This study supported the continued use of the barn owl Tyto alba javanica for biological control of rodent pests in the palm oil plantations. The numbers of different rat species consumed by owls, as measured by pellet numbers, were proportional to prey captures with R. r. diardii dominating the prey items. Weights and sexes of rats, based upon sizes of bones recovered from owl pellets, indicated that the birds did not preferentially prey on any size or sex classes of rats. Although there was no differential predation by the owls, a functional, and possibly a numerical, response of the birds to changes in rat numbers was demonstrated. A functional response of barn owls to prey abundance was evidenced by a significant positive relationship between the relative abundance of rats captured and numbers of pellets collected. Some form of numerical response of barn owls was suggested by higher breeding records when rat abundances were significantly higher. Since both functional and numerical responses are important determinants of whether predators are likely to be able to regulate prey numbers, the role of barn owls as a practical biological control agent in oil palm plantations was supported. This study suggested that the regulation of rodent pests in oil palm plantations should not be limited to chemical measures but can be complemented by other biological factors including interspecific interactions, manipulation of the availability and density of food and habitat structure, in addition to predation by barn owls. The findings suggested that an integrated approach to rodent control, considering all biological factors that influence rat numbers, should be properly applied if an environmentally friendly and possibly cost effective approach is to be applied for the palm oil industry.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / The natural regeneration in disturbed areas might become a slow process due to harsh conditions and constraints imposed by the environment. The positive interactions in these locations are important for the establishment of woody plant community. In abandoned pastures the isolated remnant trees facilitate regeneration by easing the environmental conditions, reducing competition below their canopies and attracting animal dispersers that might increase the local seed rain. Thus, this study aimed to understand the role of isolated trees in the regeneration process and evaluate which factors might affect this process. For this purpose, we selected an abandoned pasture in Deciduous Seasonal Forest conditions (DSF), located within the borders of Parque Estadual do Pau Furado (Pau Furado State Park), Uberlândia MG. In a 10 - hectare area we selected twenty isolated trees and set four 4m² - plots in each one, two below the canopy and two outside the canopy (open area). All the regenerating woody individuals found in the plots were measured and identified. Some characteristics of the trees were also measured: tree height, canopy coverage and area, and distance from the nearest DSF fragment. The environmental data of temperature and relative humidity were gathered in both environments (below and outside the canopy) in two distinct seasons (dry and rainy). The natural regeneration was represented by 245 woody individuals (224 in the plots below the canopy and 21 in the plots outside the canopy), distributed in 51 species, 42 genera, and 22 botany families. The most important families were Fabaceae, Myrtaceae, Rubiaceae, Malvaceae and Bignoniaceae. The plots below the canopy showed higher density of individuals and species richness when compared to the plots outside the canopy. When it comes to dispersion syndrome, the zoochore species were predominant (46.9%), indicating that isolated trees attract dispersers that deposit the seeds on site. As a direct effect of canopy shading we recorded lower temperature and higher values of relative humidity below the canopy in both seasons. The shading also affected the grass coverage that was reduced below the canopy. This reduction is important for seedlings establishment and growing, since alien grasses set limits to natural regeneration due to competition. From the analyzed environmental and biophysical factors by using Canonical Correspondence Analysis (CCA), the height, the canopy area and RH showed a relation to distribution of woody species. The relation species/environment was significant in the dry season (p<0.05), according to Monte Carlo test even though it only explained 23.7 of data variation. In stressful environments, as abandoned pastures, a successful regeneration will probably rely on the existence of isolated trees that act as facilitators easing, thus, the environmental conditions below their canopies. / A regeneração natural em áreas degradadas pode se tornar um processo lento, devido às condições adversas e das barreiras impostas pelo ambiente. Nesses locais, as interações positivas podem ser muito importantes para o estabelecimento da comunidade lenhosa. Em pastagens abandonadas, as árvores remanescentes isoladas facilitam a regeneração por amenizar as condições ambientais e reduzir a competição abaixo de sua copa, e atrair animais dispersores que podem incrementar a chuva de sementes no local. Assim, o presente estudo teve como objetivo compreender o papel de árvores isoladas no processo de regeneração e avaliar quais fatores podem estar atuando nesse processo. Para essa finalidade, selecionou-se uma pastagem abandonada (sem uso) em condições de Floresta Estacional Decidual (FED), situada dentro dos limites do Parque Estadual do Pau Furado, Uberlândia, MG. Em uma área de 10 hectares, foram escolhidas vinte árvores isoladas, e em cada uma foram instaladas quatro parcelas de 4m², duas sob a copa e duas fora da copa (área aberta). Todos os indivíduos lenhosos regenerantes encontrados nas parcelas foram medidos e identificados. Algumas características da árvore também foram mensuradas: altura da árvore, área e cobertura da copa e distância do fragmento de FED mais próximo. Os dados ambientais de temperatura e umidade relativa do ar e cobertura do solo foram medidos nos dois ambientes (dentro e fora da copa) em duas estações distintas (seca e chuvosa). A regeneração natural foi representada por 245 indivíduos do componente lenhoso (224 nas parcelas sob a copa e 21 nas parcelas fora), distribuídos em 51 espécies, 42 gêneros e 22 famílias botânicas. As famílias que mais se destacaram foram Fabaceae, Myrtaceae, Rubiaceae, Malvaceae e Bignoniaceae. As parcelas sob a copa das árvores apresentaram maior densidade de indivíduos e riqueza de espécies que as parcelas abaixo da copa. Quanto às síndromes de dispersão, nas parcelas sob a copa houve uma predominância de espécies zoocóricas (46,9%), um indicativo de que as árvores isoladas atraem dispersores que depositam sementes no local. Como efeito direto do sombreamento pela copa, observamos temperaturas mais baixas e valores mais altos de umidade relativa nas parcelas abaixo da copa, nas duas estações do ano. O sombreamento também afetou a cobertura de gramíneas, que foi reduzida abaixo da copa das árvores. Essa redução é importante para o estabelecimento e crescimento das plântulas, pois as gramíneas exóticas limitam a regeneração por serem fortes competidoras. Dentre os fatores ambientais e biofísicos avaliados, usando Análise de Correspondência Canônica (ACC), a altura, área de copa e UR apresentaram relação com a distribuição das espécies lenhosas. A relação espécie/ambiente foi significativa na estação seca (p<0,05) pelo teste de Monte Carlo, mesmo explicando somente 23,7% da variação dos dados. Em ambientes estressantes, como pastagens abandonadas, o sucesso da regeneração pode, muitas vezes, depender da existência de árvores isoladas que atuam como facilitadoras amenizando, desta forma, as condições ambientais abaixo da copa das árvores. / Mestre em Ecologia e Conservação de Recursos Naturais

Étant au somment de la chaîne alimentaire, les grands prédateurs ont la capacité d'influencer le fonctionnement des écosystèmes, y compris au sein de leur guilde. En Afrique, les lions (Panthera leo) et les hyènes tachetées (Crocuta crocuta, hyènes ci-après) sont les plus gros et les plus nombreux prédateurs, et les hyènes sont souvent considérées comme subordonnées aux lions. Néanmoins, notre compréhension de leurs interactions est très limitée, d'autant plus dans les milieux boisés. Ce travail vise à identifier les mécanismes permettant la coexistence des hyènes et des lions. L'hypothèse principale est que les hyènes évitent les lions à la fois dans l'espace et dans le temps. Une revue de la littérature montre que malgré leur fort potentiel pour la compétition d'exploitation (régimes alimentaires similaires) et d'interférence (kleptoparasitisme et prédation), les lions partagent la quasi-totalité de leur distribution avec les hyènes et leurs densités sont positivement corrélées. J'ai collecté des données sur l'écologie des hyènes et des lions durant 2.5 ans à partir d'observations directes et de colliers GPS dans le Parc National de Hwange (PNH), au Zimbabwe. PNH est caractéristique d'une savane dystrophique arborée semi-aride dominée par l'éléphant (Loxodonta africana). L'écologie de la hyène y est largement influencée par la localisation des points d'eau artificiels, des carcasses d'éléphants et des lions. Les hyènes sélectionnent les habitats riches en proies et près des points d'eau, tout comme le font les lions qu'elles n'évitent que dans des conditions extrêmes de vulnérabilité et de risques. Les carcasses d'éléphants représentent une ressource alimentaire majeure pour les hyènes qui en ont augmenté leur utilisation en réponse à une augmentation de la compétition avec les lions. La disponibilité de ces carcasses facilite probablement la coexistence entre les deux carnivores. Les rencontres avec les lions autour de carcasses sont communes et les deux espèces peuvent rester à proximité pendant plusieurs nuits consécutives. En revanche, les rencontres non liées aux carcasses sont de très courte durée et les deux prédateurs s'éloignent rapidement l'un de l'autre. Contrairement à l'hypothèse classique, les hyènes n'évitent pas les lions de manière systématique. Les interactions entre les deux espèces sont complexes et les hyènes répondent aux lions de manière dynamique et réactive plutôt que prédictive. Bien que les lions soient leur plus grand compétiteur, les hyènes restent à proximité dans certaines circonstances, car ils représentent une source alimentaire grâce au charognage et au kleptoparasitisme. Ces résultats apportent de nouvelles connaissances sur les mécanismes de coexistence et d'interactions entre grands carnivores ainsi que sur l'impact potentiel des décisions de gestion sur leur écologie qui peuvent être utiles pour leur conservation / Being at the top of the food chain, apex predators have the potential to influence the whole community structure through food webs, even within their own guild. In Africa, lions (Panthera leo) and spotted hyaenas (Crocuta crocuta, hyaenas hereafter) are the largest and most numerous predators, with hyaenas often thought to be subordinate to the larger lion Never the less, our understanding of their interactions is limited, even more in wooded ecosystems. This work focuses on identifying the mechanisms allowing for hyaenas and lions to coexist, such as resource and habitat partitioning. The main hypothesis is that hyaenas should avoid lions both spatially and temporally. A literature review shows that despite the high potential for exploitative and interference competition (high range and diet overlaps), hyaenas are present at nearly all sites occupied by lions and their densities are positively correlated. I collected data on hyaena and lion ecology, through direct observations and GPS collars, during 2.5 years of fieldwork in Hwange National Park (HNP), Zimbabwe. HNP is characteristic of a semi-arid dystrophic wooded savanna dominated by elephants (Loxodonta africana). In HNP, hyaena ecology is largely influenced by the location of artificial waterholes, elephant carcasses and lions. Hyaenas select for habitats where prey are abundant and locations close to artificial waterholes, as do lions. Hyaenas only spatially avoid lions in extreme conditions of vulnerability and risk. Elephant carcasses are a major source of food for hyaenas and their used increased during a period of increased intraguild competition with lions, which lead to switch in hyaena foraging strategy from active hunting to scavenging. The presence of large carcasses is probably promoting coexistence between the two large carnivores. Encounters with lions at carcasses are common and can occur during several consecutives nights with the two predators staying in the vicinity of each other. However, when not related to food, encounters are very short with both predators often moving away after being in contact. In stark contrast with the classical hypothesis, hyaenas in HNP do not show a general pattern of lion avoidance. Interactions between these two species are complex and hyaenas appear to respond to lion presence is reactive rather than predictive and very dynamic. Even though lions are their main competitors, in some circumstances hyaenas stay in their vicinity, as they can also be a source of food through scavenging and kleptoparatism. These results bring some light on the mechanisms of interaction and coexistence between large carnivores as well as the impact on management decisions on their ecology that could prove useful for planning their conservation

Ligninolytic fungi are well known for their ability to degrade a wide range of xenobiotics contaminating the environment, including synthetic industrial dyes. In this work Pleurotus ostreatus was used for decolorization of a synthetic textile dye Remazol Brilliant Blue R (RBBR). To set up a model fungal "fixed-bed" bioreactor the fungus was immobilized on a polyurethane foam and artificially contaminated with a model bacterium Rhodococcus erythropolis. The development of bacterial contamination can be expected during a real application of fungal bio filters in wastewater treatment. The main aim of the work was to study interspecies interactions in the model bioreactors during the dye decolorization. Ligninolytic enzyme activities were followed in the bioreactor cultures as markers of fungal biodegradation ability. In contrast to the controls, no bacterial growth was observed in the P. ostreatus bioreactor culture liquid. The results showed that fungal laccase, pH of the culture liquid, and glucose consumption by the fungus had no effect on the bacterial growth. However, 4*105 - 1,3*106 CFU/ml of R. erythropolis was detected to be associated with the fungal solid support. The presence of these bacteria had no effect on the decolorization performance of the bioreactors. Dye decolorization efficiency...

Adaptive radiation – the proliferation of species from a single ancestor and diversification into many ecologically different forms – has long been heralded as an important process in the generation of phenotypic diversity. However, the early stages of adaptive radiation are notoriously elusive to observe and study. In this dissertation, I capitalize on communities of introduced non-native Anolis lizards as analogues of early stage adaptive radiations. In Chapter II, I begin by reviewing the concept of “ecological opportunity” – a classic hypothesis put forward as a potential key to understanding when and how adaptive radiation occurs. In Chapter III, I investigate the mechanisms which allow for coexistence and community assembly among ecologically-similar species. To do this I investigate range dynamics and assembly patterns of introduced anoles on the oceanic island of Bermuda. I discover that interspecific partitioning of the structural environment facilitates species coexistence, however the order of species assembly was an important predictor of final community composition. In Chapter IV, I then investigate how interspecific interactions between coexisting species may drive phenotypic divergence. This is the process of character displacement, which has been widely hypothesized to be an important mechanism driving phenotypic divergence in adaptive radiations. To do this I investigate sympatric and allopatric populations of introduced Cuban brown anoles (Anolis sagrei) and Puerto Rican crested anoles (A. cristatellus) in Miami FL, USA. I identify morphological shifts in sympatry, driven by divergence in habitat use and decreases in abundance. This study provides evidence of how selection on both ecologically and sexually-important traits can both drive phenotypic divergence during character displacement. Finally, in Chapter V, after taking advantage of non-native species as model eco-evolutionary systems in previous chapters, I investigate the potentially harmful effects that their presence may have on vulnerable native biodiversity. To do this I investigate the conservation risk posed by newly-discovered populations of A. sagrei on Bermuda to Critically Endangered endemic Bermuda skinks (Plestiodon longirostris). Through a detailed analysis of habitat use, diet, population size, and morphology of A. sagrei on Bermuda, we conclude it likely poses a high conservation threat to P. longirostris through interspecific competition.

Invasive exotic species threaten biodiversity and ecosystem functions globally, creating need for and encumbering ecological restoration. When restoring exotic plant-dominated ecosystems, reinvasion pressure is the rate of new exotic recruitment following mature exotic removal. It can vary broadly among similarly invaded habitats and is crucial to restoration outcomes and costs, but is difficult to predict and poorly understood. Initial results from the experimental restoration of a wetland dominated by Triadica sebifera led us to develop the ‘outgrow the stress’ hypothesis. It holds: (1) Variation in reinvasion pressure is driven by differences in propagule abundance and spatiotemporal availability of realized recruitment windows, which are defined by abiotic conditions and biotic interactions. (2) Differences in reinvasion pressure become masked by exotic dominance when increases in niche breadth during development enable exotic persistence across sites where recruitment windows range from frequent to episodic. We validated this hypothesis. First, we used greenhouse and field experiments to quantify Triadica’s moisture niche early in development. By two months post-germination, seedling tolerances broadened to include conditions unsuitable for germination. This clearly demonstrated a rapid ontogenetic niche expansion, which could decouple mature Triadica density and average reinvasion pressure. Second, we used a greenhouse mesocosm experiment to quantify how recruitment window duration, competition and fertility impacted population-level Triadica establishment in stressful environments. As ‘outgrow the stress’ predicts, longer windows increased Triadica success and multi-factor interactions were common, with competition and fertility effects varying among environmental contexts. Third, we substantiated predictions of ‘outgrow the stress’ regarding propagule availability and soil moisture by manipulating these in a multi-site field experiment spanning eleven experimental restorations of Triadica-dominated habitats along a moisture gradient. Triadica reinvasion pressure varied broadly among sites but correlated with moisture and fertility. Propagule availability drove reinvasion in favorable environments, but availability of suitable conditions trumped propagules in extreme environments. Competition reduced Triadica performance and sometimes survival. Triadica prevalence reduced native plant prevalence. Six restorations require minimal Triadica management for success. This work advances our understanding and enables better predictions of reinvasion pressure and invasions in general. Accurate predictions enhance restoration efficiency by informing site selection and optimal management strategies.