Dans l’étude de la spéciation, l'existence de zones dans lesquelles deux espèces en sympatrie montrent différents niveaux de différenciation génétique constitue une bonne opportunité pour comprendre la nature et l'évolution des barrières à la reproduction entre espèces. Jaera (albifrons) albifrons et Jaera (albifrons) praehirsuta sont deux espèces d’isopodes marins qui coexistent en sympatrie le long des côtes nord-européennes. Des barrières écologiques, comportementales, et génétiques cloisonnent efficacement ces deux espèces, à l'exception d'une région unique (Normandie, France) dans laquelle des morphotypes intermédiaires avaient été décrits dans les années 60.Au cours de cette thèse, l'utilisation de microsatellites et de SNPs obtenus par séquençage RAD ont permis de démontrer que le niveau d'isolement interspécifique varie fortement entre sites, de l'hybridation introgressive à l'isolement quasi-complet. Une analyse comparative de ces sites combinant échantillonnage en populations naturelles, croisements expérimentaux et analyses génomiques a ensuite permis de : i) mettre en avant le rôle prépondérant de l'isolement sexuel (qui reste fort dans les populations introgressées) accompagné d'une barrière post-zygotique relativement faible, ii) découvrir la présence de bactéries Wolbachia au sein des deux espèces, iii) démontrer que la coexistence des deux espèces résulte d'une spéciation allopatrique suivie de contacts secondaires avec reprise de flux de gènes d'intensité variable, et iv) montrer que ces flux de gènes varient également fortement au sein du génome, les chromosomes sexuels et des chromosomes réarrangés semblant limiter fortement l'introgression. / Within the field of speciation, sympatric areas with different levels of interspecific genetic differentiation offer a good opportunity to understand the nature and evolution of reproductive barriers between species. Jaera (albifrons) albifrons and Jaera (albifrons) praehirsuta are two species of marine isopods that coexist in sympatry along the northern European coasts. Ecological, behavioral and genetic barriers efficiently isolate these two species, except in a unique region (Normandy, France) where morphological phenotypes were described in the 60's.In this thesis, microsatellites and SNPs obtained from RAD-sequencing allowed me to demonstrate that the level of interspecific isolation varies widely between sites, from introgressive hybridization to quasi-complete isolation. A comparative analysis of these sites combining sampling from natural populations, experimental crosses, and genomic analyses then allowed me to: i) demonstrate the predominant role of sexual isolation (which remains strong in introgressed populations), together with a relatively weaker post-zygotic barrier, ii) discover the presence of Wolbachia bacteria within the two species, iii) demonstrate that the coexistence of these species originate from an allopatric speciation followed by secondary contacts with varying levels of heterospecific gene flow renewal, and iv) show that gene flow varies also strongly along the genome, with an effect of sex chromosomes and rearranged chromosomes apparently limiting introgression.

Invasive species can have a variety of effects on the behavior and ecology of native species. Currently in New Orleans, Louisiana, both A. sagrei and A. carolinensis lizards are relatively abundant, but the A. sagrei population is expanding rapidly. I used a combination of laboratory and field studies to investigate factors that might be influencing local dominance of invasive A. sagrei over native A. carolinensis populations, including habitat use, display behavior, interspecific aggressive interactions, and plasticity. When comparing display behavior and habitat use in anole populations across three field sites in southern Louisiana, I found differences in male display behavior of both species, and also that A. carolinensis perched higher when A. sagrei was present. In staged interspecific interactions, I discovered that A. sagrei females achieved consistently higher aggressive scores than A. carolinensis females, suggesting that female interspecific behavior is probably more important than male behavior in driving changes in habitat use. Lastly, I studied plasticity in several morphological and whole-organism performance variables by rearing males and females of each species on two different perch diameters. I found that sprinting performance in A. sagrei was significantly different between treatment groups, although the morphological differences between perch treatments were subtler than those reported in previous studies. I also found that A. carolinensis females exhibited significant differences in both sprinting and clinging performance, despite no significant differences in male or female morphology between perch size treatments, highlighting the potential for both species-specific and sex-specific plasticity.

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第22033号 / 理博第4537号 / 新制||理||1652(附属図書館) / 京都大学大学院理学研究科生物科学専攻 / (主査)准教授 森 哲, 教授 沼田 英治, 教授 中務 真人 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DGAM

The aim of this work is a literature review on the topic of the mitochondrial genome and DNA barcoding, building a dataset of mitochondrial sequences from GenBank database and creatione of a software function for extraction of individual genes that are present in the mitochondrial genome. This function was developed in Matlab. DNA barcoding is a method that uses short DNA sequence of mitochondrial genome for identification of species. There is no comprehensive work examining the appropriateness of different mitochondrial genes. This aim investigates the potential of other mitochondrial genes and evaluate their effectiveness for DNA barcoding and calculation of intra-and interspecific variability.

Orientador: Ivan Sergio Nunes Silva Filho / Resumo: Trachycephalus atlas e Trachycephalus nigromaculatus são espécies da família Hylidae, Ordem Anura, que são morfologicamente semelhantes entre si. Apesar de T. atlas ser relatada em sua maioria em ambientes do Bioma Caatinga e T. nigromaculatus ocorrer em regiões costeiras da Mata Atlântica e interioranas em matas de galeria do Cerrado, ambas foram registradas em ambientes com fitofisionomia vegetal de transição de Mata Atlântica e Caatinga, especialmente no estado da Bahia. Devido à sua semelhança morfológica, não existe uma característica conspícua que ajude na diagnose destas espécies. Suas diferenças aparecem no canto e no girino. Neste estudo examinamos essas duas espécies utilizando a morfometria geométrica para analisar as variações da forma do crânio e determinar se essas variações são diagnósticas, encontrando amparo em dados estatísticos robustos. A morfometria geométrica (MG) tem sido empregada para resolver uma variedade de questões do mais amplo contexto de ecologia e evolução. Foram examinados 160 exemplares de coleções representativas das espécies, perfazendo o maior número possível de localidades registradas. Os crânios dos indivíduos foram fotografados em vista dorsal e lateral e 17 marcos anatômicos (landmarks) foram selecionados e digitalizados de acordo com a representatividade em estruturas homólogas da área craniana de todos os exemplares. Para as análises de morfometria geométrica foi utilizado o método de sobreposição de Procrustes com as coordenadas do... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Trachycephalus atlas and Trachycephalus nigromaculatus are species of the family Hylidae, Order Anura, which are morphologically similar to each other. Although T. atlas is mostly reported in environments of the Caatinga Biome and T. nigromaculatus occurs in coastal regions of the Atlantic Forest and inlands of Cerrado, both were recorded in environments with transition vegetation phytophysiognomy of the Atlantic Forest and Caatinga, especially in the state of Bahia. Due to its morphological similarity, there is no conspicuous characteristic that helps in the diagnosis of these species. Their differences appear in the call and the tadpole. In this study we examine these two species using geometric morphometry to analyze variations in the shape of the skull and determine whether these variations are diagnostic, finding support in more robust statistical data. Geometric morphometry (GM) has been used to solve a variety of issues in the broadest context of ecology and evolution. The sample consisted of 160 specimens of representative collections of the species, sampling the largest possible number of registered locations. The skulls of the individuals were photographed in dorsal and lateral views and 17 anatomical landmarks were selected and digitized according to the representativeness in homologous structures of the cranial area of all the specimens. For the analysis of geometric morphometry, the Procrustes superimposition method with the coordinates of the milestones for the ... (Complete abstract click electronic access below) / Mestre

<p>Pored rodova evropskih orhideja koji se odlikuju velikim stepenom diverzifikacije, kao i značajnim brojem novoopisanih vrsta, kao &scaron;to su <em>Ophrys </em>ili<em> Epipactis,</em> rod<em> Anacamptis </em>je ostao poprilično zapostavljen u orhidolo&scaron;kim istraživanjima. Na predstavnicima ovog roda uglavnom su vr&scaron;ena molekularna istraživanja, u kojima je bio uključen i veći broj drugih rodova.Takođe, urađene su i opsežne studije, ali samo na pojedinim vrstama. Morfolo&scaron;ka istraživanja su bila veoma retka i uz par uzuzetaka, ograničena na geografski mala područja i na jednu ili nekoliko morfolo&scaron;ki sličnih vrsta. Analiza morfolo&scaron;ke varijabilnosti ovolikog broja taksona roda<em> Anacamptis</em> na geografski relativno velikom području kakvo je Balkansko poluostrvo, kao i deo Panonske nizije koji se oslanja na njega, do&nbsp; sada nije bilo sprovedeno. Morfolo&scaron;kim analizama bili su podvrgnuti gotovo svi predstavnici ovog roda u rangu vrste i podvrste, a koji se javljaju na području kopnenog dela Balkanskog poluostrva, kao i južnog oboda Panonske nizije. Sprovedene su jednostrane i uporedne morfolo&scaron;ke analize sa detaljnomobradom podataka metodama bazične, univarijantne i multivarijantne statistike. Do sada najvećim istraživanjem taksona roda<em> Anacamptis</em>, po broju obrađenih jedinki i području na kom je sprovedeno, bila je obuhvaćena 2001 jedinka iz 185&nbsp; populacija. Analizirane su prirodne populacije, ali i materijal iz Herbarijuma BUNS. Ukupno je definisano 69 morfolo&scaron;kih karaktera, kvantitativnih i kvalitativnih, a među njima su traženi oni koji imaju potencijalno diferencijalni karakter između opisanih vrsta i infraspecijskih taksona. Analize su obuhvatile i interpopulacionu morfolo&scaron;ku varijabilnost u okviru svakog taksona, a u cilju uočavanja postojanja određenih geografskih obrazaca njenih promena. Morfolo&scaron;ki karakteri koji su se u sprovedenim analizama pokazali kao taksonomski informativni, iskori&scaron;ćeni su za formiranje dihotomog ključa za determinaciju taksona roda <em>Anacamptis</em> prisutnih na istraživanom području. Analizama je utvrđen veliki broj karaktera koji su statistički značajno različiti između analiziranih populacija, podvrsta i vrsta. Većina karaktera je pokazala umerenu ili nisku varijabilnost, a u retkim slučajevima i povećanu. Karakteri cveta međusobno su statistički značajno korelisani,većina slabo do umereno, dok su oni na listićima kacige, kao i između labeluma i drugih delova cveta jako do izrazito jako povezani. Jedini takson koji nije pokazao nikakvu infraspecijsku diferencijaciju, a koji se odlikuje velikom unutari interpopulacionom varijabilno&scaron;ću je<em> A. pyramidalis</em>. Iz istog razloga je pokazano kao neosnovano izdvajanje jedinki iz različitih delova njegovog areala u do sada opisane infraspecijske oblike. Potvrđena je niska morfolo&scaron;ka varijabilnost uskorasprostranjene vrste <em>A. boryi.</em> Kod svih preostalih istraživanih taksona utvrđeno je postojanje određenih obrazaca geografske interpopulacione varijabilnosti i infraspecijske struktuiranosti.Populacije <em>A. laxiflora</em> subsp. <em>laxiflora </em>mogu se podeliti na jadranske i kontinentalne, pri čemu najzapadnije pokazuju i najmanje vrednosti analiziranih karaktera. <em>A. coriophora </em>subsp.<em> fragrans </em>se pokazala kao manje varijabilnom od tipske podvrste, ali je u okviru nje kao zaseban takson izdvojen var. <em>hermae </em>kao fenolo&scaron;ki, ekolo&scaron;ki i morfolo&scaron;ki odvojen u odnosu na ostaleispitivane populacije. Tipska podvrsta pokazuje obrazac variranja ukupne morfolo&scaron;ke varijabilnosti u pravcu zapad-istok. Kao karakteri koji su najznačajniji za diferencijaciju podvrsta vrste<em> A. palustris</em> izdvojeni su dužina i &scaron;irina brakteje, stepen diferenciranosti labeluma na režnjeve, kao i dubina sinusa koja ih razdvaja. Populacije<em> A. palustris</em> subsp. <em>elegans</em> moguće je podeliti na tri geografski i morfolo&scaron;ki definisane grupe &ndash; istočnobalkansku, zapadnobalkansku i periferne populacije sa severa Srbije i iz Slovenije. Kao diferencijalni karakteri između taksona sekcije <em>Laxiflorae</em> pokazali su se odnos između dužine plodnika i brakteje, kao i dužina srednjeg režnja labeluma. Vrsta<em> A. morio </em>je po prvi put jasno morfolo&scaron;ki i arealno podeljena na dve podvrste na istraživanom području. Podvrste pokazuju velika preklapanja vrednosti morfolo&scaron;kih karaktera, ali se obe odlikuju specifičnim karakteristikama cveta, pre svega labeluma na osnovu kojih ih je moguće razlikovati. Definisani su areali podvrsta<em> A.morio </em>na istraživanom području &ndash; tipska podvrsta je prevashodno severnija i zapadnija, dok je subsp.<em> caucasica </em>južnija i istočnija. Prvu odlikuju krupniji cvetovi, bubrežastih labeluma sa srednjim režnjem koji ne prevazilazi značajno dužinu bočnih, dok je druga sa sitnijim cvetovima i snažno isturenim srednjim režnjem. Obe podvrste mogu se podeliti na grupe populacija sa jasno definisanim geografskim raspostranjenjem. Vrsta <em>A. papilionacea </em>je po prvi put morfolo&scaron;ki istaživana na većem broju primeraka, a ne prostim poređenjem pojedinačnih primeraka iz različitih delova areala. Pokazana je morfolo&scaron;ka diferenciranost na dve podvrste &ndash; tipsku i subsp. aegaea, koje se jasno morfolo&scaron;ki razlikuju i zauzimaju različite delove areala vrste. U okviru subsp. <em>papilionacea</em> registrovan je klinalni raspored morfolo&scaron;ke varijabilnosti u pravcu sever-jug. Registrovana su i tri hibrida, nova za područje pojedinih zemalja &ndash; A. <em>&times; gennarii</em> (Severna Makedonija),A. <em>&times; parvifolia</em> (Crna Gora) i A. &times; <em>timbali</em> (Srbija). Hibridi pokazuju generalnu morfolo&scaron;ku intermedijarnost u odnosu na roditelje, ali se odlikuju i novim stanjima karaktera, nezabeleženim kod roditeljskih taksona. Slični obrasci morfolo&scaron;ke varijabilnosti, kako na interpopulacionom nivou pojedinih vrsta, ali iizmeđu podvrsta svake istraživane vrste, pokazuju jasnu vezu između istraživanih taksona i jo&scaron; jednom opravdavaju njihovo zajedničko grupisanje u rod<em> Anacamptis.</em></p> / <p>Unlike the highly diversified and species-rich genera of European orchids, such as<em> Ophrys </em>or <em>Epipac</em>tis, the genus <em>Anacamptis </em>has remained quite neglected in orchidological research. Representatives of this genus, together with many others genera, were investigated mainly by molecular methods. Also, extensive studies have been done, but only on specific species. Morphological studies were very rare, and with a few exceptions, limited to geographically small areas and one or more morphologically similar species. Analysis of the morphological variability of so many taxa of the genus <em>Anacamptis</em>, in a is, in a geographically relatively large area such as the Balkan Peninsula, as geographically relatively large area such as the Balkan Peninsula, as well as the southern part of the Pannonian Plain, has not been conducted so far. Morphological analyses were<br />performed on almost all representatives of this genus,in the species and subspecies rank , occurring in the Balkan Peninsula mainland, as well as in the southern perimeter of the Pannonian Plain. Comparativemorphological analyses were conducted using the methods of basic, univariate and multivariate statistics.So far, the largest study of the genus&nbsp; nacamptis, by the number of processed individuals and the area in which it was conducted, included 2001 individuals from 185 populations. Natural populations and&nbsp; material from the BUNS Herbarium were analyzed. A total of 69 morphological characters, quantitative and&nbsp; qualitative, were defined, and those that have a potentially differential character among analyzed species and infraspecific taxa were selected. The analyzes also included interpopulation morphological variability within each taxon, to identify the existence of specific geographic patterns of its changes. The morphological characters that proved to be taxonomically informative, were used to form the dichotomous key for the determination of the genus Anacamptis members, presented in the study area. The analyzes identified a large number of characters that were statistically significantly different between the analyzed populations, subspecies, and species. Most of the characters showed moderate or low variability, and in rare cases increased variability. Flower&rsquo;s characters were statistically significantly correlated with each other, most of them weakly to moderately, while those of the sepals and petals, as well as between the&nbsp; labellum and other parts of the flower, were very strongly correlated. The only taxon that has not shown any infraspecific differentiation (except <em>A. boryi</em>), and which is characterized by high intra- and interpopulation variability, is A. pyramidalis. For the same reason, it has been shown as unjustified to separate individuals from different parts of species range into infraspecific forms. The low morphological variability of the narrowly distributed A. boryi was confirmed. In all other taxa studied, the existence of certain patterns of geographical interpopulation variability and infraspecific structuring was detected. <em>A. laxiflora</em> subsp. <em>laxiflora</em> populations can be divided into two groups &ndash; Adriatic and Continental, with the lowest characters values measured among the westernmost populations. <em>A. coriophora s</em>ubsp. <em>fragrans</em> proved to be less variable than the type subspecies, but within it, a new variety (var. hermae) as phenological, ecological and morphologically distinct from other studied populations was described. The typesubspecies has a transition of morphological variability in a west-east direction. The characters that are the most important for differentiation of A. palustris subspecies are the&nbsp; bract length and width, the degree of labellum differentiation into lobes, and the depth of the sinuses that separate them. Populations of A. palustris subsp. elegan<em>s </em>can be divided into three geographically and morphologically defined groups &ndash; Eastern Balkan, Western Balkan and peripheral populations from the North Serbia and Slovenia. Differential characters&nbsp; among the Laxiflorae section taxa are ration between the ovary length and bract length, as well as the labellum middle lobe length. For the first time, species <em>A. morio </em>is morphologically and geographically divided into two subspecies, in the&nbsp; study area. Analyzed subspecies have great overlapping values for many morphological characters, but both are characterized by specific flower&rsquo;s characteristics, above all labellum shape. On this basis, it is possible to distinguish them. Areals of <em>A</em>. <em>morio </em>subspecies were defined &ndash; the type subspecies is predominantly northern and western,while subsp. caucasica is southern and eastern. The first is characterized by larger flowers, renal shape labellum with a median lobe that does not exceed significantly the length of the lateral ones, while the second subspecies has smaller flowers and strongly projecting the median lobe. Both subspecies can be divided into groups of populations that have clearly defined geographical distribution. For the first time, A. papilionacea was morphologically investigated on a larger number of specimens, unlike previous&nbsp;&nbsp; researches in which individual specimens from different parts of the range were simply compared. Morphological differentiation into two subspecies was shown &ndash; type and subsp. aegaea. They are morphologically distinct and occupy different parts of the species range. Within the subsp. papilionacea a clinal distribution of morphological variability in the north-south direction was recorded. Three taxa of hybrid origin, new for the area of North Macedonia (A.<em> &times; gennari</em>i), Montenegro (A. <em>&times; parvifolia</em>) and Serbia (A. &times; t<em>imbali</em>) were registered. Hybrids exhibit a general morphological intermediacy between parents but are also distinguished by new character states that were not observed in<br />parental taxa. Similar patterns of morphological variability, both at the interpopulation level ofindividual species and between the subspecies of each species studied, show a clear relationship between the studied taxa and once again justify their grouping into the genus <em>Anacamptis.</em></p>

Lethal interactions between carnivorans (interspecific killing) may influence their population dynamics, behavior, and other important aspects of their ecology. In this study, I expand upon previous research on the broad-scale patterns of interspecific killing in Carnivora (Palomares & Caro 1999, Donadio & Buskirk 2006) with a greatly expanded dataset (inclusion of scat and stomach data and more intensive sampling of the literature), and suggest avenues for future research. While like previous studies, I found a positive effect of relative body size between killer species and killed species on the likelihood of forming a killing interaction, I failed to find evidence that this effect had a body size ratio threshold above which interactions become less common, suggesting a greater role of non-competitive killing than previously believed. I also found evidence for a positive influence of range overlap and dietary overlap on species interactions, but found mixed effects of phylogeny. This study suggests that our previous understanding of the broad-scale dynamics interspecific killing in Carnivora was, due to limited sampling, incomplete in scope. Incidental killing, whereby killing interactions occur as a byproduct of opportunistic lethal encounters caused by the hyperpredatory behavior of carnivorans, has a number of interesting implications for our understanding of interspecies aggression, including research on intraguild predation and its effects.

Social observational learning is one of learning abilities expected in domestic horses (Equus caballus) because of their ecological and evolutional history. However, a few studies focused on this type of learning in horses failed to provide clear evidence of observational learning and/or could not distinguished it from other types of learning. We tested interspecific observational learning abilities using the spatial task and a human demonstrator. We hypothesised that 1) horses with possibility of observing a human demonstrator will complete the task in shorter time than control horses without any demonstrator, and 2) horses observing a familiar demonstrator will carry out the task in shorter time than horses with an unfamiliar demonstrator due to established positive human - horse relationship. Twenty - four riding horses of mixed age and breed were randomly allocated to three groups per 8 and started the task either with observing a familiar demonstrator, unfamiliar demonstrator or no demonstrator (control group). Each horse was released individually at the starting point in the experimental paddock and the latency to pass the task was recorded. A horse completed the task once it walked 25 m from the starting point to the squared area (4x4 m) fenced by a tape, went into it through the entrance on the...

The family Procyonidae (raccoons, coatis, olingos, ringtails, kinkajous, and their extinct relatives) consists of six extant genera and is restricted to North and South America. Currently recognized fossil species suggest that procyonid diversity was previously much greater, including six extinct genera throughout South America. However, it is unusual that so many confamilial taxa are represented in a relatively brief span of time and restricted geographic region, and, considering that six of ten are based on badly preserved specimens, often fragments of bone with worn teeth, the validity of many of these taxa is suspect. As a step towards reevaluating past procyonid diversity in South America, we sought to identify the degree of intra- and interspecific variation in six molariform teeth of extant Procyon, particularly to identify which teeth are potentially most useful for identifying fossil procyonids. The six molariform cheek teeth analyzed consistently yielded smaller intra- than interspecific variation, permitting high accuracy of taxonomic classification. However, this accuracy varied by tooth, and the upper and lower first molars proved to be the most reliable. Thus, these particular teeth should be preferred, if available, as bases for recognizing extinct species of procyonids or reevaluating currently recognized extinct species, as a means to prevent nomina dubia.

No description available.