Os canais seletivos a ânions dependente de voltagem (VDACs) são um grupo de proteínas, primeiramente identificadas na membrana mitocondrial externa, capazes de formar estruturas de poros hidrofílicos em membranas. As VDACs são conhecidas pela sua função essencial no metabolismo celular e nos estágios recentes de apoptose. Em mamíferos, foram identificadas três isoformas de VDACs (VDAC1, 2 e 3). Uma pesquisa proteômica, consistindo de eletroforese bi-dimensional seguida por western blotting com anticorpos anti-VDAC 1, anti-VDAC 2 e anti-VDAC 3 e espectrometria de massas com fonte de ionização/desorção à laser assistido por matriz e tempo de vôo foi utilizada para estudar a expressão das isoformas de VDAC em mitocôndrias cerebrais de aves, ratos e bois. Foi estudada a possibilidade que diferenças na expressão relativa das isoformas de VDAC possam ser um fator determinante da proporção espécie-dependente dos sítios de ligação da hexoquinase tipo A: tipo B nas mitocôndrias cerebrais. Os spots foram caracterizados, e a intensidade de sinal foi comparada entre os spots. VDAC1 e VDAC2 foram divididas dentro de múltiplos spots. A VDAC1 foi dividida em dois spots nos géis bi-dimensionais realizados com amostras de cérebros de ratos e bois, e três spots para cérebros de aves. A VDAC2 foi separada em três, cinco e dois spots para cérebros de ratos, bois e aves, respectivamente. Os resultados reportam uma heterogeneidade de carga das VDACs 1 e 2 nos cérebros analisados. A VDAC1 foi a mais expressa das três isoformas. Além disso, a expressão da VDAC1 mais VDAC2 foi muito maior em cérebros de aves e bois do que em cérebros de ratos. Mitocôndrias de cérebro de aves mostraram uma maior expressão de VDAC1 e menor de VDAC2. As mitocôndrias de cérebro bovino apresentaram os níveis mais altos de VDAC2. A VDAC3 não foi detectada nos cérebros das espécies estudadas. / The voltage dependent anion selective channels (VDACs) are a group of proteins first identified in the mitochondrial outer membrane that are able to form hydrophilic pore structures in membranes. VDAC are known to play an essential role in cellular metabolism and in the early stages of apoptosis. In mammals, three VDACs isoforms (VDAC1, 2, 3) have been identified. A proteomic approach, consisting of two dimensional electrophoresis, followed by western blotting with anti-VDAC 1, anti-VDAC 2 and anti-VDAC 3 and by matrix assisted laser desorption/ionization time of flight mass spectrometry was used to study the expression of VDAC isoforms in rat, bovine and avian brain mitochondria. We were studying the possibility that differences in the relative expression of VDAC isoforms may be a factor in determining the species-dependent ratio of type A: type B hexokinase binding sites on brain mitochondria. The spots were characterized, and the signal intensities among spots were compared. VDAC1 and VDAC2 were divided into multiple spots. VDAC1 was divided in two spots in two dimensional gels of rat and bovine brains and three spots in avian brains. VDAC2 was separated into three, five and two spots in rat, bovine and avian brains, respectively. The results report charge heterogeneity of VDACs 1 and 2 in the analyzed brains. VDAC1 was the most abundantly expressed of the three isoforms. Moreover the expression of VDAC1 plus VDAC2 was much higher in avian and bovine brains than in rat brains. Avian brain mitochondria showed the highest expression of VDAC1 and the lowest of VDAC2. Bovine brain mitochondria had the highest levels of VDAC2. No VDAC 3 was detected in studied species brains.

Orientador: Marco Aurelio Zezzi Arruda / Tese ( doutorado) - Universidade EStadual de Campinas, Instituto de Quimica / Made available in DSpace on 2018-08-12T12:53:25Z (GMT). No. of bitstreams: 1 Magalhaes_CristianaSchmidtde_D.pdf: 4986578 bytes, checksum: d903003de832394edae53527286bdab8 (MD5) Previous issue date: 2008 / Resumo: Este trabalho de Tese apresenta os resultados da avaliação de onze procedimentos de extração de proteínas nas plantas medicinais ginkgo biloba (Ginkgo biloba L.) e castanha da Índia (Aesculus hippocastanum) e no fitoterápico Espirulina (Spirulina maxima). Os procedimentos variaram desde a simples agitação até àqueles onde se somavam várias etapas, tais como agitação, maceração, sonicação e centrifugação. A avaliação foi feita em termos da comparação da concentração de proteínas totais extraídas por meio de cada procedimento, utilizando-se o método de Bradford e de Kjeldhal. Os procedimentos contendo mais etapas se mostraram mais eficientes na extração de proteínas. Também foi feito o mapa protéico da castanha da Índia (Aesculus hippocastanum) e avaliada a influência dos procedimentos de extração de proteínas no perfil protéico da referida amostra. Para isso foi feita a separação das proteínas presentes nos extratos protéicos utilizando-se eletroforese SDS-PAGE. Esta separação (para as proteínas desnaturadas e sob condição não-redutora) permitiu identificar, em termos de massa molar, quais proteínas compunham os extratos protéicos, onde se verificou uma banda mais expressiva (MM = 33,2 ± 0,9 kDa), independentemente do procedimento de extração usado, fato que foi relacionado à mobilidade da proteína. Quando a separação ocorria sob condições redutoras, a banda mais expressiva apresentava MM = 23,5 ± 0,5 kDa. Com a finalidade de se fazer uma investigação mais detalhada, as proteínas da castanha da Índia que foram extraídas pelo procedimento de maceração e centrifugação, foram também separadas por eletroforese bidimensional, na qual houve o desdobramento da banda mais expressiva em pelo menos nove bandas protéicas. Estas bandas foram decompostas tripticamente e foram analisadas por espectrometria de massas, com a obtenção de várias seqüências peptídicas que se repetiam em várias bandas diferentes. Estes resultados sugerem que estas proteínas se tratam de isoformas. Finalmente, foi proposta a identificação de quais íons metálicos estariam ligados às proteínas, o que foi possível por meio do mapeamento das bandas protéicas utilizando-se a fluorescência de raios-X com radiação Síncrotron. Foram identificados 4 íons metálicos, os quais foram investigados quantitativamente. As bandas separadas por SDS-PAGE e por 2D-PAGE foram decompostas por radiação microonda e a determinação das concentrações dos íons metálicos foi obtida por ETAAS e FAAS. Para as bandas separadas por 2D-PAGE observou-se uma interessante distribuição não homogênea dos íons metálicos, sugerindo que algumas se trataram de metaloproteínas, enquanto outras não. Assim, estas proteínas podem ser de origem citosólica e de armazenamento, e que, embora sejam apenas coadjuvantes na ação medicinal da castanha, participariam ativamente nos processos germinativos e metabólicos da planta. / Abstract: This work presents the evaluation of eleven protein extraction procedures using ginkgo biloba (Ginkgo biloba L.), horse chestnut (Aesculus hippocastanum) medicinal plants, and also using the phytomedicine Spirulina (Spirulina maxima). The procedures varied since the agitation only until the addition of several steps, such as agitation, maceration, sonication, and centrifugation. This evaluation was made by comparing the total extracted proteins through Bradford and Kjeldhal methods. The more efficient protein extraction procedures were those whose steps were added. The influence of protein extraction procedures was also evaluated in the protein map of horse chestnut (Aesculus hippocastanum). The proteins present in extracts were separated by SDS-PAGE. This separation (for denatured and non-reduced proteins) allowed identifying the more expressive protein band (MM = 33.2 ± 0.9 kDa) independently of the used procedure. When the separation was carried out under reduced and denatured conditions, the more expressive protein band had MM = 23.5 ± 0.5 kDa. This difference in MM was attributed to protein mobility. The horse chestnut proteins extracted by maceration and centrifugation were also separated by twodimensional electrophoresis in order to obtain a more detailed protein profile. Through this separation, the more expressive band was folded in, at least, nine protein bands. These bands were triptically decomposed and analysed by mass spectrometry. Several peptide sequences that repeated in different protein bands were obtained. These results suggested to deal of isoforms. Finally, the identification of metallic ions bonded to proteins, using Sincrotron radiation- X-ray fluorescence was also proposed. Four metallic ions were identified, which were quantitaively investigated. The protein bands separated by SDS-PAGE and by 2D-PAGE were decomposed using microwave radiation, and metallic ion concentrations were determined by ETAAS and FAAS techniques. For 2D-PAGE bands an interesting non-homogeneous metallic ion distribution was observed, suggesting that some proteins can be metalloproteins or metal-binding proteins. Therefore, these studied proteins probably present a citosolic origin and storing function. However, they may be coadjuvants at medicinal action, and much probably participate in germinating and metabolic processes. / Doutorado / Quimica Analitica / Doutor em Ciências

Abstract In this work the type XVIII collagen has been studied by using several approaches, such as different animal models. The primary structure of frog, Xenopus laevis, type XVIII collagen and the expression pattern of its variants during early embryogenesis have been elucidated. The gene structure of human type XVIII collagen was characterized and the localization and processing of its longest variant was studied by generated antibodies. In addition, the function of the proteolytically released C-terminal part of type XVIII collagen, endostatin, was studied by generating transgenic mice expressing endostatin. The primary structure of X. laevis type XVIII collagen is comprised of three N-terminal variants resembling their mammalian counterparts. The sizes of the polypeptides are 1285, 1581, and 1886 residues. The most conserved regions are the C-terminal endostatin region and the cysteine-rich domain in the N-terminus. Whole-mount in situ hybridization reveals different expression patterns for variants during embryogenesis. The short variant is the most abundant, whereas the two longest variants exhibit more restricted expression. The gene structure of human type XVIII collagen reveals an exon-intron organization that is conserved with mouse. The length of the human gene is about 105 kb and contains 43 exons. The third variant of type XVIII collagen has a conserved cysteine-rich domain with homology to the extracellular part of frizzled proteins. This third variant is localized to developing muscle and lung, and is also found in serum. In cell culture, the proteolytic fragments of the N-terminus, including the cysteine-rich motif, are also detected. Endostatin function was studied by generating mouse lines expressing endostatin under the keratin-14 promoter, which drives the expression mainly in the skin. Three independent transgenic mouse lines were achieved with varied expression levels. The phenotype was seen in the eye with lens opacity and abnormal morphology of epithelial cells in the lens. In the skin, a broading of the basement membrane in the epidermis dermis junction was detected. Immunoelectron microscopy analysis revealed a polarized orientation of type XVIII collagen in the basement membrane. In transgenic mice, altered localization of endogenous type XVIII collagen was seen, suggesting displacement of the endogenous type XVIII collagen with transgenic endostatin leading to disorganized basement membrane.

La maladie de Paget est caractérisée par un remodelage osseux anarchique débutant par une phase de résorption excessive suivie d’une phase de formation désordonnée. Comme les ostéoclastes sont recrutés en plus grand nombre et sont hyperactifs aux sites affectés par la maladie, cette cellule a été incriminée dans ce désordre osseux. Le phénotype de l’ostéoclaste pagétique comporte de plus un défaut du processus autophagique, de même qu'une résistance à l'apoptose, dont les mécanismes restent mal connus. Certains facteurs génétiques et environnementaux contribuent en partie au phénotype, mais d'autres facteurs pourraient y être associés. Des travaux du laboratoire ont mis en évidence six événements de l’épissage alternatif associés à la maladie de Paget. Parmi les gènes identifiés, le gène TBC1D25 et ses deux isoformes connus n’ont jamais été étudiés dans l’ostéoclaste. Le gène TBC1D25 possède un domaine hautement conservé TBC régulant l’activité des petites GTPases Rabs dans le transport vésiculaire et un domaine LIR liant la protéine LC3 durant le processus de l’autophagie. Ces domaines fonctionnels se retrouvent seulement dans l’isoforme long. L’hypothèse de recherche est que l’altération de l’épissage alternatif du gène TBC1D25 dans les ostéoclastes pagétiques explique en partie le phénotype de la cellule. Le changement dans le ratio de l’expression des isoformes affecterait le processus de l’autophagie, en plus d’affecter la principale fonction de l’ostéoclaste, la résorption osseuse. L’objectif principal de l’étude est de caractériser l’expression et la fonction de TBC1D25 dans les ostéoclastes humains. Des ostéoclastes humains différenciés à partir de monocytes fœtaux ont été utilisés pour l’étude de la fonction de TBC1D25 dans l’autophagie, l’apoptose et la résorption osseuse. Les travaux ont permis de localiser les protéines dans l’ostéoclaste dans des conditions maintenant un niveau basal de l’autophagie et dans des conditions induisant l’autophagie. L’interaction entre TBC1D25 et Rab34 a été confirmée pour la première fois dans les ostéoclastes. De plus, une variation de cette interaction a été observée dans les différentes conditions modulant le niveau d’induction de l'autophagie. Les résultats préliminaires montrent une augmentation du ratio LC3II/LC3I lors de la diminution de l’expression de TBC1D25 dans des conditions augmentant l’induction de l'autophagie. Par contre, aucun effet a été observé sur la résorption osseuse ou sur l'apoptose lors de la diminution de l’expression de TBC1D25. En conclusion, les résultats préliminaires montrent que TBC1D25 préviendrait l’augmentation du ratio LC3II/LC3I dans l’ostéoclaste soit en inhibant l’induction de l’autophagie ou en favorisant la dégradation des autophagosomes par l’entremise de son action sur Rab34. / Abstract : Paget’s disease of bone (PDB) is characterized by increases in bone turnover starting with excessive resorption followed by disorganized bone formation. Because the initial phase of PDB involves excessive bone resorption, osteoclasts have been identified as the cells primarily affected in PDB. Pagetic osteoclasts are overactive, resistant to apoptosis and exhibit defects in autophagy, but the mechanisms involved are still unclear. While genetic and environmental factors associated with PDB may partially account for the osteoclast phenotype, other genetic contributors have been identified. Recent work from our laboratory has identified six alternative splicing events associated with PDB. Among those genes, TBC1D25 and its two known isoforms have never been studied in osteoclasts. The two functional domains of TBC1D25 (TBC and LIR) are only present in the long isoform. The highly conserved TBC domain regulates small Rab GTPases in vesicular transport and the LIR domain interacts with LC3 during autophagy. Our research hypothesis is that altered alternative splicing of TBC1D25 in pagetic osteoclasts could contribute to phenotype. Differential isoform expression could affect osteoclast autophagy and bone resorption. The aim of the study is to characterize the expression and function of TBC1D25 proteins in human osteoclasts. Osteoclasts differentiated from cord blood monocytes were used to investigate the function of TBC1D25 in autophagy, apoptosis and bone resorption. First, the localization of the protein has been characterized in conditions maintaining basal autophagy and in rapamycin-induced autophagy. Interactions between TBC1D25 and Rab34 have been observed for the first time in osteoclasts. Moreover, changes in the interaction were observed with autophagy induction. Preliminary results suggest increases in LC3II/LC3I ratio with decreasing TBC1D25 expression when autophagy induction is stimulated. On the other hand, preliminary results showed that decreased expression of TBC1D25 did not affect bone resorption, nor apoptosis. In conclusion, preliminary results show that in osteoclasts, TBC1D25 could prevent the increase of LC3II/LC3I ratio by inhibiting autophagy induction or by promoting the clearance of autophagosomes through its action on Rab34.

Prostate cancer is the most common noncutaneous malignancy in men. It is an excellent target for primary prevention. Vitamin E trials conducted for prevention of prostate cancer have had conflicting results with a lower incidence of prostate cancer in the ATBC trial and a higher incidence in the vitamin E arm of the SELECT trial. Most of the clinical trials with vitamin E have been limited to the alpha-tocopherol isoform alone. An increasing body of evidence suggests, however, that the gamma- and delta-isoforms of tocopherol and tocotrienols are more promising with regard to cancer prevention. This review tries to justify our assertion that the gamma- and delta-isoforms of tocopherol and tocotrienol might be superior as prostate cancer preventers.

Prostate cancer is the most common noncutaneous malignancy in men. It is an excellent target for primary prevention. Vitamin E trials conducted for prevention of prostate cancer have had conflicting results with a lower incidence of prostate cancer in the ATBC trial and a higher incidence in the vitamin E arm of the SELECT trial. Most of the clinical trials with vitamin E have been limited to the alpha-tocopherol isoform alone. An increasing body of evidence suggests, however, that the gamma- and delta-isoforms of tocopherol and tocotrienols are more promising with regard to cancer prevention. This review tries to justify our assertion that the gamma- and delta-isoforms of tocopherol and tocotrienol might be superior as prostate cancer preventers.

No description available.

No description available.

Chitinase has been suggested to play a role in defense mechanisms. In this study, the activity and expression of chitinase in muskmelon seeds were investigated. Multiple chitinase isoforms were detected in muskmelon seeds from early development through radicle emergence. One acidic and three basic chitinase isoforms were detected in developing seeds at 40 days after anthesis (DAA). Both acidic and basic chitinase isoforms were detected in endosperm tissue during seed imbibition and after radicle emergence. Basic chitinase isoforms, but not acidic isoforms, were detected in embryo tissue. Basic chitinase isoforms were also detected in the embryonic axis or radicle tissue. Taken together, these observations indicate that chitinases are regulated developmentally and in a tissue-specific manner in muskmelon seeds. Therefore the potential function of chitinases in muskmelon seeds is discussed. Two complete cDNAs, Cmchi1 and Cmchi2, and a partial genomic clone of Cmchi2 have been isolated from muskmelon seeds. Cmchi2 gene has two introns in the coding region while Cmchi1 is intronless. Cmchi1 cDNA encodes a class III chitinase while Cmchi2 cDNA encodes a class II chitinase. Cmchi1 and Cmchi2 proteins might be targeted to secretory pathways because they possess signal peptides. Southern blotting suggested that there is at least one additional gene similar to Cmchi1 in the muskmelon seed genome, while there is only one copy of Cmchi2. Northern blotting analysis showed that both Cmchi1 and Cmchi2 are expressed in the radicle tissue at the time of radicle emergence. This indicates that the expression is regulated developmentally and in a tissue-specific manner. Salicylic acid (SA) and benzothiadiazole (BTH) stimulated the expression of Cmchi1 but not Cmchi2 in seeds after radicle emergence, indicating that SA might be involved in inducing the expression of Cmchi1, while a different signal might be involved in triggering the expression of Cmchi2. The protein encoded by Cmchi1cDNA was expressed in E.coli. It did not show any enzymatic activity. Western blotting using an antibody raised against the class III chitinase protein in cucumber was inconclusive, as this antibody recognized the purified Cmchi1 fusion protein and other unknown proteins isolated from the embryonic axis or the radicle tissue. / Ph. D.

No description available.