The aquatic environment is severely impacted by xenobiotics that are released due to anthropogenic activities, threatening ecosystem health. Some of these contaminants accumulate in lipophilic fish tissues and are maternally transferred to developing offspring, affecting their growth and performance. However, knowledge about the long-term and generational impacts associated with maternal transfer of contaminants is limited in fish. In this thesis, the hypothesis tested was that maternal transfer of bisphenol A (BPA) leads to disruption in the developmental programing of growth and stress axes functioning in rainbow trout (Oncorhynchus mykiss), and that these changes are passed on to the next generation. This was tested by exposing oocytes to either control (vehicle; <0.01% ethanol) 0.3, 3.0, and 30.0 mg l-1 BPA in ovarian fluid for 3 h, prior to fertilization, to mimic maternal transfer. This led to the accumulation of 0, 0.8, 4.4 and 41.3 ng BPA embryo-1. Oocytes were fertilized with milt from clean males, and offspring growth, development and stress performances were assessed in a clean environment for a year (F1 generation). For F2 generation, oocytes collected from F1 females, raised from the different BPA accumulated eggs, were fertilized with milt from clean males and raised in a clean environment for one year as described for F1 generation. The accumulated BPA in eggs was quickly cleared and it was no longer detected in the F1 embryos at hatch. BPA exposure reduced specific growth rate and increased food conversion ratio in larvae reared from BPA-laden oocytes. Moreover, BPA-exposed fish had an altered cortisol developmental profile and a delay in stress axis maturation. In addition, the mRNA abundance of genes involved in somatotropic [insulin-like growth factor (IGF) -1; IGF-2; IGF receptor b (IGF-1rb)] and stress axes functioning [steroidogenic acute regulatory protein (StAR); cytochrome P450 side chain cleavage (P450scc)] were altered. Also, changes in thyroid signaling [thyroid receptor (TR) mRNA levels] and cortisol signaling [glucocorticoid receptor (GR) protein expression] were disrupted temporally during development. These results demonstrate that BPA accumulation in eggs, mimicking maternal transfer, impacts growth and development, and delays stress axis maturation via non-reproductive endocrine disrupting routes in trout. Some of the BPA changes seen in F1 generation also persisted in the F2 generation. For instance, ancestral exposure to BPA led to reduced growth and whole body glycogen content prior to feeding in the F2 fish. The developmental transcript profile of growth hormone-1and -2, IGF-1 and -2 and IGF-1rb, along with whole body cortisol levels were impacted by ancestral exposure to BPA. Moreover, a delay in cortisol dynamics post-stress was noted in the F2 fish of BPA exposure lineage. Our results show that ancestral exposure to BPA leads to effects on growth and stress performance in rainbow trout, but the mechanism is not known. To further investigate the long-term effect of BPA accumulation in eggs on stress performances, F1 and F2 juvenile fish were subjected to an acute stressor. Also, head kidney tissues from these juvenile fish were subjected to adrenocorticotrophic hormone (ACTH) stimulation in vitro to assess cortisol production capacity. BPA accumulation in eggs led to a reduced acute handling stressor-induced plasma cortisol response in trout from the F1 and F2 (only high BPA group) generations. Also, BPA exposure had a pronounced impact on acute handling stressor-mediated plasma glucose (only F2 generation) and lactate levels, indicative of a metabolic disturbance. BPA exposure (only the 4.4 ng group) did affect unstimulated but not stimulated [ACTH or 8-bromo-cyclic AMP (8-B-cAMP)] cortisol production from head kidney slices of juvenile fish from F1 generation. In the F2 generation, there was an increase in ACTH-stimulated cortisol production only from the high BPA-exposed group. Overall, BPA in eggs disrupts long-term cortisol and metabolic stress performances in rainbow trout. While the impaired plasma cortisol stress performance was dose-related in the F1, the effect was apparent only for high BPA group in the F2 generation, suggesting that the generational effects on cortisol stress axis functioning may be concentration-dependent. A metabolomics approach further confirmed multigenerational effects associated with BPA accumulation in eggs. Analysis of the metabolome profile at hatch and prior to first feed, using gas chromatography-time of flight-mass spectrometry (GC-TOF-MS), revealed a BPA-mediated metabolic disruption, including changes in pathways involved in carbohydrate, lipid and amino sugar metabolism, and amino acid metabolism and synthesis. Pathways involved in citric acid cycle and alanine, aspartate and glutamate metabolism were altered in both generations, suggesting that these pathways have the potential to be markers with predictive value for multigenerational effects of BPA in fish. Altogether, the study provides novel insights on the impact of BPA on rainbow trout metabolome at hatch and first feed. The results suggest that pathways involved in energy metabolism are targets for BPA impact and should be investigated as potential markers for BPA toxicity. Overall, BPA accumulation in oocytes induces long-term delays in growth and stress axis maturation in F1 generations fish, and these effects persist in the F2 generation. The developmental profiles of key genes of the somatotropic and HPI axes were altered by BPA, along with whole body composition, suggesting that BPA exposure leads to a metabolic disturbance in fish, resulting in reduced growth. Additionally, the altered plasma cortisol response to acute stress in F1 and F2 juveniles provides evidence for multigenerational effects of BPA on stress axis functioning. The current study proposes that BPA-induced epigenetic modifications during early development may be playing a key role in the generational effects on growth and stress axes disruption in trout. The finding that the growth and developmental changes to BPA exposure also corresponds with endocrine and metabolome changes in multiple generations in trout is novel, and underscores the necessity to develop new risk assessments tools for chemicals that are maternally transferred in fish.

Uma avaliação da concentração dos aminoácidos primários em amostras de urina de crianças com refluxo vésico-ureteral (VUR) em busca de caminhos para o diagnóstico não invasivo desta doença. Dois métodos analíticos por eletroforese capilar com detecção UV/vis foram desenvolvidos para a quantificação dos analitos. No método 1 empregou-se a detecção UV/vis direta em 200 e 214 nm com as condições eletroforéticas eletrólito tampão fosfato 90 mmol L-1 pH 2,1; tensão de +15 kV; injeção de 7 s a 0,5 psi; capilar de 75 &#181;m de diâmetro interno; 40,2 cm de comprimento total e 30,0 cm de comprimento efetivo. No método 2, fez-se uso da detecção indireta em 254 nm, com as condições eletroforéticas eletrólito tampão TEA 20 mmol L-1 e DNB 10 mmol L-1 pH 10,84; modificador de fluxo DDAB a 4 mmol L-1; tensão de -15 kV; injeção de 7 s a 0,5 psi; capilar de 75 &#181;m de diâmetro interno; 50,2 cm de comprimento total e 40,0 cm de comprimento efetivo. O método 1 apresentou parâmetros de validação linearidade, precisão intra-dia e inter-dia, seletividade, robustez e recuperação satisfatórios. A quantificação de creatinina, fenilalanina (Phe), histidina (His), triptofano (Trp), tirosina (Tyr) nas amostras de urina foi possível pelo método 1, porém inviável para quantificação de arginina (Arg). O método 2 apresentou valores de robustez e recuperação satisfatórios para os aminoácidos alanina (Ala), aspartato (Asp), glutamato (Glu) e glicina (Gly) satisfatórios, mas a quantificação dos mesmos na maioria das amostras de urina diluída não foi possível por estarem em nível de concentração abaixo da detecção ou quantificação. Para avaliar a potencialidade dos resultados como ferramenta no diagnóstico do VUR, os aminoácidos His, Phe, Trp e Tyr, quantificados em todas as amostras, foram empregados como variáveis na classificação das amostras em dois grupos distintos (1) grupo de crianças saudáveis e (2) grupo de crianças diagnosticadas com VUR. A classificação realizada pelo método de análise de componente principal (PCA) apresentou valores estatísticos satisfatórios e poder de predição: R2 (capacidade de ajuste) e Q2 (capacidade de predição) foram 0.9993 e 0.65, respectivamente com os dois componentes principais (PC1 e PC2). A separação total com valor de Q2 desejável (acima de 0,8) poderia ser alcançada com uma quantidade maior de informação, sendo neste caso, número maior de aminoácidos quantificados. Assim, este trabalho abre caminho para estudos mais aprofundados na investigação da concentração dos aminoácidos primários em pacientes com VUR, objetivando o desenvolvimento de um potencial biomarcador para VUR. / An assessment of the concentration of primary amino acids in urine samples from children with vesicoureteral reflux (VUR) using capillary electrophoresis separation with UV/vis detection has been proposed to help establishing a means for non invasive diagnosis of the disease. Two analytical methods were developed. Method 1 used direct UV/vis detection at 200 and 214 nm, 90 mmol L-1 phosphate buffer at pH 2.1, high voltage separation at +15 kV, injection of 0.5 psi during 7 s, and a fused-silica capillary of 75 &#181;m inner diameter, 40.2 cm total length, and 30.0 cm effective length. Method 2 used indirect UV/vis detection at 254 nm, TEA at 20 mmol L-1 and DNB at 10 mmol L-1 electrolyte at pH 10.84, 4 mmol L-1 DDAB as flow modifier, separation voltage at -15 kV, injection of 0,5 psi during 7 s, fused-silica capillary of 75 &#181;m inner diameter, 50.2 cm total length, and 40,0 cm effective length. Method 1 presented satisfactory results for linearity, intra-day and inter-day precision, selectivity, robustness, and recovery. By method 1 it was possible to quantify creatinine, phenylalanine (Phe), histidine (His), tryptophan (Trp), tyrosine (Tyr) but not arginine (Arg) in the urine samples under investigation. Method 2 presented satisfactory robustness and recovery for alanine (Ala), aspartate (Asp), glutamate (Glu) and glycine (Gly), but the contents of these metabolites in the urine samples were not established because they lay below the limits of detection and quantitation. To assess the potentiality of the results as diagnostic tool for VUR condition, the concentrations of the amino acids His, Phe, Trp and Tyr, quantified in all samples, were used as variables in a classification procedure where samples were divided in two distinct groups: (a) a group of healthy children and (b) a group of children diagnosed with VUR. The classification by principal component analysis (PCA) showed a partial separation with good statistics and prediction power: R2 (goodness of fit) and Q2 (goodness of prediction) were 0.9993 and 0.65, respectively with two components analysis (PC1 and PC2). Values of Q2 greater than 0.8 are usually desired and it could be provided if more information was available, such as a greater number of amino acids being quantified. Thus, this research opens the way for further investigative studies of amino acids concentration in patients with primary VUR, aimed at developing a potential biomarker for VUR.

In the recent years, the consumer choices have been focused on health-promoting plant-based food and their preferences are oriented towards regional foodstuff from local productions. Therefore, an important factor for vegetables grown Trentino-Alto Adige (Italy) is to point out the added value of alpine farming to evaluate the nutritional values of farming products. Omics technologies (e.g. genomics, transcriptomics, proteomics and metabolomics) are aimed at investigating the assessment of different pools of molecules and how they are translated into the structure, function, and dynamics of a biological system or systems in order to provide a comprehensive characterization of a specific organism. Research use the omics techniques to exhaustively understand the functionality of food components. Several sophisticated chromatographic methods, spectroscopic techniques and chemometric tools are applied to give an insight into a comprehensive overview of the intrinsic quality, typicality and regionality of specific plant-based foods in the present PhD thesis: apples and potatoes. The quality of these foods is evaluated by quantifying the secondary metabolites to investigate their nutraceutical values. The aim of this PhD project is to use several analytical techniques (LC-MS, UV-VIS) that are capable of comprehensively characterizing the food metabolome with particular emphasis on those components with high nutritional values. The data analysis and data handling of omics data requires advanced bioinformatic, statistical, and chemometric tools. Potatoes and apples are chosen as target matrices for these studies for their relevance in the local economy and for the peculiar chemical composition of particular interest for their health-promoting proprieties. The information is acquired using several sophisticated chromatographic and spectroscopic techniques, such as ultra-high performance liquid chromatography coupled with triple quadrupole mass spectrometry (UHPLC– MS/MS) and UV/VIS. It is integrated to chemometric approaches (principal component analysis (PCA), partial least square regression (PLS), and data fusion) to achieve a comprehensive targeted chemical characterization. The sampling procedures gathers, in the case of the potatoes study, reference cultivars that may be found in the common retailers of Trentino/Alto-Adige and different production areas, the apples of 22 cultivars were harvest from the fields of the Laimburg Research Centre (Vadena, Italy) to guaranty comparability of the obtained data. Our results may be used as solid foundation for a reliable evaluation of apples and potatoes healthy "potential" value based on cutting-edge techniques, which are capable of providing comprehensive data regarding the alpine food quality parameters with high efficiency and reliability

Toxoplasma gondii bildet im Nerven- und Muskelgewebe seines Zwischenwirts persistente enzystierte Bradyzoiten, die Immunreaktionen und medizinischen Behandlungen entgehen. Der experimentelle Zugang zu reifen Zysten ist auf ex vivo Modelle beschränkt und die Bradyzoiten-Biologie unzureichend erforscht. Das Metabolom oder Wirtszell-Bradyzoiten-Interaktionen und Persistenzmechanismen sind mit aktuellen in vitro und in vivo Modellen schwer zu adressieren. Um dies zu ermöglichen, war es das Ziel dieser Arbeit ein in vitro Modell zur Generierung reifer T. gondii Zysten zu etablieren und zu charakterisieren. Dieses System wurde verwendet, um (1) das Metabolom von reifen enzystierten Bradyzoiten im Vergleich zu Tachyzoiten zu charakterisieren, (2) Wirtszell-Bradyzoiten-Interaktionen zu untersuchen und (3) einen Zellteilungsmarker für Bradyzoiten zu etablieren. Bradyzoiten wurden in ausdifferenzierten menschlichen Myotuben generiert und zeigten typische ultrastrukturelle Charakteristika und Antigenexpression. Die Bradyzoiten zeigten auch funktionelle Merkmale wie Resistenz gegen Pepsin, Temperatur und Antiparasitika, die von der Reifungszeit abhängig waren. Der metabolische Fingerabdruck von Bradyzoiten wurde mit Tachyzoiten mit Hilfe einer ungezielten HILIC-UHPLC / MS-basierten Metabolomik-Plattform verglichen. Während die Hemmung der Aconitase durch Natriumfluoracetat letal in Tachyzoiten wirkte, tolerierten Bradyzoiten eine längere Hemmung des Enzyms. Stabile isotopenmetabolische Markierung und pharmakologische Modulation des Wirt Lipidstoffwechsels wiesen auf eine entscheidende Rolle der Wirts Carnitinester für den Fettsäureimport und die Entgiftung der antimikrobiellen Linolsäure hin. Um einen Zellteilungsmarker auf Einzelzellebene zu entwickeln, wurden Klick-Chemie nachweisbare Nukleosidanaloga auf Toxizität in beiden Stadien und ihr jeweiliges Inkorporationsprofil untersucht. Drei der Analoga wurden ohne toxische Wirkungen in die DNA von beiden Stadien eingebaut. / Toxoplasma gondii forms persistent encysted bradyzoites inside neuronal and muscle tissue of its intermediate host, which resist immune responses and medical treatments. Experimental access to mature tissue cysts is limited to ex vivo models and the biology of bradyzoites remains understudied. Aspects like the metabolome or bradyzoite-host-interactions and mechanisms of persistence are difficult to address using current in vitro and in vivo models. To overcome these restrictions, the aim of this thesis was the establishment and characterization of an in vitro model for the generation of matured T. gondii tissue cysts. This system then should be used to (1) characterize the metabolome of matured encysted bradyzoites in comparison with tachyzoites, (2) interrogate bradyzoite-host-interactions and (3) establish a cell division marker for bradyzoites that allows studying bradyzoite heterogeneity. Encysted bradyzoites were grown in terminally differentiated human myotubes and showed typical ultrastructural hallmarks and antigen expression. These bradyzoites contained functional hallmarks like resistance to pepsin, temperature and commonly used antiparasitics that were dependent on maturation time. The metabolic fingerprint of bradyzoites was compared to tachyzoites using an untargeted HILIC-UHPLC / MS based metabolomics platform. While tachyzoites succumbed to inhibition of their aconitase by sodium fluoroacetate, bradyzoites tolerated prolonged inhibition of this enzyme. Further, stable isotope-metabolic labeling and pharmacological modulation of host lipid metabolism indicated a critical role of host carnitine esters for fatty acid import and for the detoxification of antimicrobial linoleic acid. To develop a single cell-resolved cell division marker, we screened click chemistry-detectable nucleoside analogues for toxicity on both stages and their respective incorporation profile. Three compounds labelled both bradyzoite and tachyzoite nuclei without toxic effects.

Okra (Abelmuschus esculentus (L) Moench.) is one of the most popular crops within the Malvaceae family of plants. It is a common vegetable eminently cultivated in regions experiencing constraints to manage climate change. In South Africa climate change coupled with aluminium-enriched soils are responsible to drawbacks crop performance. Therefore, it is worthwhile to whether okra will thrive as an alternative crop in the country. Many studies have identified potential of okra to improve yields of resource poor farmers in Africa. The physiological responses of okra seed to variations in aluminium ions and temperature were not determined. Therefore, a study with okra, cv. Clemson Spineless, seed coated and uncoated with B. subtilis, was initiated to assess germination on moist filter paper in 90mm diameter Petri plates. Germination medium consisted of various concentrations of aluminium chloride (AlCl3), 0M, 0.001M, 0.01M, 0.05M and 0.1M. Each aluminium treatment was allocated into incubators adjusted to 22°C, 25°C and 37°C temperatures. This resulted into a 5 x 3 x 2 factorial experiment with five replicates and was conducted in three cycles. Daily scores of germinated seeds were assessed from the second to the fifth day after initiation of germination. During termination, five days after the initiation of the experiment 10 seeds with the longest coleoptiles had their coleoptiles measured using a digital caliper. At the fifth day after initiation of the experiment, coleoptile lengths from 10 seeds per treatment were measured using digital caliper. A total of 50 plates (10 from 37°C in Cycle 1; 30 from 22°C, 25°C and 37°C from Cycle 2; 10 from 37°C in Cycle 3), were selected and germinated were ground and stored at - 20°C before 1H NMR analysis. Metabolites were extracted from 50mg ground seed material with 750 μL methanol-D4 and 750 μL buffer (deuterium oxide + potassium dihydrogen phosphate). The mixture was vortexed for three minutes, sonicated for 20 minutes, centrifuged at 18000 rpms for 20 minutes and the supernatant filtered through cotton wool. Then the supernatant was dispensed into NMR tubes for further 1H NMR spectroscopic processing using a 600 MHz NMR xiii Varian spectrometer to generate magnetic spectra of the fifty samples. Results of this study demonstrated that in all the experimental cycles, regardless of aluminium concentration and bacterial seed coating, 37°C inhibited germination percentages and coleoptile lengths in okra seed germination. Germination percentages and coleoptile lengths of bacteria-coated seeds growing in 25°C were most stimulated at all aluminium concentrations, but not at 0.1M. In this temperature germination percentages and coleoptile lengths were highly influenced by the interaction of aluminium concentrations and bacterial coating, respectively. 1H NMR metabolomic association showed no distinct grouping, but clusters across treatments showed to be linked through a subset of metabolites amongst aluminium concentrations, bacterial seed coating and temperatures, respectively. This infers that treatment variations in both seed and bacterial physiological responses were associated through shared metabolic pathways. In conclusion, the study proved that 25°C provide temperature environment within which B. subtilis can be able to stimulate growth and remediate physiological constraints from aluminium ions during okra seed germination. / Agriculture, Animal Health and Human Ecology / M. Sc. (Agriculture)

No description available.

Les plantes dans leur environnement établissent des interactions avec des micro-organismes du sol. Parmi ces interactions nous pouvons distinguer les symbioses associatives mettant en jeu des bactéries PGPR (Plant Growth Promoting Rhizobacteria). L’impact de ces microorganismes phytobénéfiques (Azospirillum, Pseudomonas…) sur le métabolisme de la plante hôte est encore mal connu. Le modèle d’étude que nous avons choisi dans le cadre de ce travail est Zea mays L. qui peut établir de nombreuses symbioses associatives avec des PGPR. Pour étudier les effets de ces micro-organismes sur le maïs, deux approches ont été développées faisant notamment appel à des outils de profilage métabolique pour i) déterminer l’impact de la simple inoculation micro-organismes sur le métabolisme secondaire racinaire et des parties aériennes de la plante hôte, et ii) évaluer les effets physiologiques de consortia microbiens comprenant Azsopirillum, Pseudomonas et Glomus. Les résultats de ce travail démontrent la place prépondérante des composés de type benzoxazinoide (benzoxazolinone et benzoxazinone) dans les interactions et la modulation de leur synthèse induite par les inocula. Par ailleurs nos travaux mettent également en évidence que la réponse métabolique de la plante à l’interaction avec les micro-organismes est dépendante de l’espèce et de la souche bactérienne considérée suggérant ainsi un phénomène de reconnaissance entre les deux organismes / In environment, plant performed some interactions with soil microorganisms. From these interactions, associative symbiosis involving PGPR bacteria (Plant Growth Promoting Rhizobacteria) can be considerate. Impact of phytobenefic microorganisms (Azospirillum, Pseudomonas…) leading to associatives interactions, on host plant metabolisms, still poorly understood. Zea mays L. was choose as study model because it can enter in various associatives symbiosis with Plant growth Promoting Rhizobacteria. To study effects of these microorganisms on maize, two approaches were developed thanks to metabolite profiling tools to (i) determine the impact of a single microorganism inoculation on host plant roots and shoots secondary metabolisms and (ii) evaluate physiological effect of microbial consortia including Azospirillum, Pseudomonas and Glomus species. Results of this work showed the major place of benzoxazinoids compounds (benzoxazolinone and benzoxazinone) in plant/microbe interaction and their synthesis modulation induced by inocula. Besides, our works brings to light that the metabolic answer of the plant to the interaction with microorganisms is dependent on species and bacterial strain suggesting a recognition phenomenon between both organisms

Metabolomics is the study of metabolites and metabolic processes. Due to the diversity of structures and polarities of metabolites, no single analytical technique is able to measure the entire metabolome - instead a varied set of experimental designs and instrumental technologies are used to measure specific portions. This has led to the development of many distinct data analysis and processing methods and software. There is hope that metabolomics can be utilized for clinical applications, in toxicology and to measure the exposome. However, for these applications to be realised data must be high quality, sufficiently standardised and annotated, and FAIR (Findable, Accessible, Interoperable and Reproducible). For this purpose, it is also important that standardised, FAIR software workflows are available. There has also recently been much concern over the reproducibility of scientific research, which FAIR and open data, and workflows can help to address. To this end, this thesis aims to assess current practices and standards of sharing data within the field of metabolomics, using metascientific approaches. The types of functions of software for processing and analysing metabolomics data is also assessed. Reporting standards are designed to ensure that the minimum information required to un- derstand and interpret the results of analysis are reported. However, poor reporting standards are ignored and not complied with. Compliance to the biological context Metabolomics Standards Initiative (MSI) guidelines was examined, in order to investigate their timeliness. The state of open data within the metabolomics community was examined by investigating how much publicly available metabolomics data there is and where has it been deposited. To explore whether journal data sharing policies are driving open metabolomics data, which journals publish articles that have their underlying data made open was also examined. However, open data alone is not inherently useful: if data is incomplete, lacking in quality or missing crucial metadata, it is not valuable. Conversely, if data are reused, this can demonstrate the worth of public data archiving. Levels of reuse of public metabolomics data were therefore examined. With greater than 250 software tools specific for metabolomics, practitioners are faced with a daunting task to select the best tools for data collection and analysis. To help educate researchers about what software is available, a taxonomy of metabolomics software tools and a GitHub pages wiki, which provides extensive details about all included software, have been developed.

Ce travail porte sur l’étude fonctionnelle de deux gènes préférentiellement exprimés dans deux régions du cerveau touchées par des pathologies neurodégénératives : Capucine, un marqueur du striatum, structure qui dégénère au cours de la maladie de Huntington et Agpat4, un marqueur de l’aire tegmentaire ventrale et de la substance noire compacte, dont les neurones dopaminergiques sont sélectivement atteints lors de la maladie de Parkinson. Des lignées de souris invalidées pour ces gènes ont été générées au laboratoire et au cours de ma thèse j’ai procédé à leur caractérisation. L’expression striatale du gène de la Capucine étant significativement diminuée dans des modèles murins de la maladie de Huntington, nous avons souhaité évaluer son rôle éventuel dans la pathogenèse de cette maladie. Pour ce faire, nous avons examiné, dans le cadre d’une collaboration, l’effet du knock-out et de la surexpression du gène de la Capucine sur la vulnérabilité des neurones striataux à un fragment de la Huntingtine mutée dans un modèle murin de la maladie de Huntington. Les données montrent que la Capucine n’a pas d’effet significatif sur la toxicité du fragment de la Huntingtine mutée dans le modèle étudié.La protéine Agpat4 présente des homologies de séquence avec des acyltransférases impliquées dans le métabolisme des phosphoglycérides. J’ai réalisé des études d’expression par différentes techniques de biologie moléculaire qui montrent que le gène d’Agpat4 est exprimé dans la plupart des tissus catécholaminergiques. Pour déterminer l’activité endogène d’Agpat4 et son rôle physiologique dans les tissus où elle est exprimée, j’ai comparé le métabolome de tissus de souris invalidées pour le gène d’Agpat4 et sauvages par chromatographie en phase liquide couplée à la spectrométrie de masse. Mes résultats indiquent que l’invalidation du gène d’Agpat4 perturbe le métabolisme non seulement de différentes classes de lipides, notamment les lysophosphatidyléthanolamines, mais aussi celui des catécholamines. / This work concerns the functional study of two genes preferentially expressed in two brain regions affected by neurodegenerative diseases: Capucine, a marker of the striatum, a structure that degenerates in Huntington's disease and Agpat4, a marker of the ventral tegmental area and the substantia nigra pars compacta, whose dopaminergic neurons are selectively affected in Parkinson's disease. Mouse lines deficient for Capucine and Agpat4 have been generated in the laboratory and during my PhD thesis I carried out their characterization.As the striatal gene expression of Capucine is significantly reduced in mouse models of Huntington's disease, we wished to evaluate its possible role in the pathogenesis of this disease. In a collaborative work, we examined the effect of the knockout and overexpression of the Capucine gene on the vulnerability of striatal neurons to a mutant Huntingtin fragment in a mouse model of Huntington’s disease. The data show that Capucine has no significant effect on the toxicity of the mutant Huntingtin fragment in the considered model.The Agpat4 protein has sequence homologies with acyltransferases involved in the metabolism of phosphoglycerides. I conducted expression studies using different molecular biology techniques, which showed that the Agpat4 gene is expressed in most catecholaminergic tissues. To determine the endogenous activity of Agpat4 and its physiological role in the tissues where it is expressed, I compared the metabolomes of Agpat4-deficient and wild-type mice tissues by liquid chromatography coupled with mass spectrometry. My results indicate that Agpat4 deficiency alters not only the metabolism of different lipid classes, in particular lysophosphatidylethanolamines, but also the metabolism of catecholamines.

Okra (Abelmuschus esculentus (L) Moench.) is one of the most popular crops within the Malvaceae family of plants. It is a common vegetable eminently cultivated in regions experiencing constraints to manage climate change. In South Africa climate change coupled with aluminium-enriched soils are responsible to drawbacks crop performance. Therefore, it is worthwhile to whether okra will thrive as an alternative crop in the country. Many studies have identified potential of okra to improve yields of resource poor farmers in Africa. The physiological responses of okra seed to variations in aluminium ions and temperature were not determined. Therefore, a study with okra, cv. Clemson Spineless, seed coated and uncoated with B. subtilis, was initiated to assess germination on moist filter paper in 90mm diameter Petri plates. Germination medium consisted of various concentrations of aluminium chloride (AlCl3), 0M, 0.001M, 0.01M, 0.05M and 0.1M. Each aluminium treatment was allocated into incubators adjusted to 22°C, 25°C and 37°C temperatures. This resulted into a 5 x 3 x 2 factorial experiment with five replicates and was conducted in three cycles. Daily scores of germinated seeds were assessed from the second to the fifth day after initiation of germination. During termination, five days after the initiation of the experiment 10 seeds with the longest coleoptiles had their coleoptiles measured using a digital caliper. At the fifth day after initiation of the experiment, coleoptile lengths from 10 seeds per treatment were measured using digital caliper. A total of 50 plates (10 from 37°C in Cycle 1; 30 from 22°C, 25°C and 37°C from Cycle 2; 10 from 37°C in Cycle 3), were selected and germinated were ground and stored at - 20°C before 1H NMR analysis. Metabolites were extracted from 50mg ground seed material with 750 μL methanol-D4 and 750 μL buffer (deuterium oxide + potassium dihydrogen phosphate). The mixture was vortexed for three minutes, sonicated for 20 minutes, centrifuged at 18000 rpms for 20 minutes and the supernatant filtered through cotton wool. Then the supernatant was dispensed into NMR tubes for further 1H NMR spectroscopic processing using a 600 MHz NMR xiii Varian spectrometer to generate magnetic spectra of the fifty samples. Results of this study demonstrated that in all the experimental cycles, regardless of aluminium concentration and bacterial seed coating, 37°C inhibited germination percentages and coleoptile lengths in okra seed germination. Germination percentages and coleoptile lengths of bacteria-coated seeds growing in 25°C were most stimulated at all aluminium concentrations, but not at 0.1M. In this temperature germination percentages and coleoptile lengths were highly influenced by the interaction of aluminium concentrations and bacterial coating, respectively. 1H NMR metabolomic association showed no distinct grouping, but clusters across treatments showed to be linked through a subset of metabolites amongst aluminium concentrations, bacterial seed coating and temperatures, respectively. This infers that treatment variations in both seed and bacterial physiological responses were associated through shared metabolic pathways. In conclusion, the study proved that 25°C provide temperature environment within which B. subtilis can be able to stimulate growth and remediate physiological constraints from aluminium ions during okra seed germination. / Agriculture, Animal Health and Human Ecology / M. Sc. (Agriculture)