Emulsions, suspensions colloïdales, solutions polymères, suspensions bactériennes, ... Les propriétés dynamiques de ces systèmes dispersés reposent sur l'interaction entre la structure microscopique de la phase dispersée et l'écoulement de la phase continue.Le travail présenté dans cette thèse porte sur la dynamique collective de telles suspensions forcées hors-équilibre. Le forçage peut avoir lieu à l'échelle macroscopique (advection, force uniforme, ...) ou à l'échelle microscopique (auto-propulsion).Le dénominateur commun à toutes mes études est de chercher à comprendre la dynamique grande échelle des suspensions sur la base des symétries des interactions, principalement hydrodynamiques, entre les particules.Notre approche est expérimentale et repose sur l'utilisation d'outils microfluidiques pour réaliser des expériences modèles quantitatives.Dans la première partie du manuscrit, j'étudie la dynamique de suspensions de particules passives rigidement confinées au sein d'un film fluide. En particulier, je présente nos résultats expérimentaux et théoriques sur la propagation d'ondes de densité linéaires au sein de telles suspensions. Dans la seconde partie du manuscrit, je m'intéresse à la dynamique d'assemblées bidimensionnelles de particules auto-propulsées en mouvement dans un fluide globalement au repos. Je présente notre système expérimental, basé sur un mode de propulsion original des particules, et qui permet d'étudier et de comprendre l'émergence du mouvement collectif sur la base des interactions de paires. J'étudie ensuite la propagation des excitations non linéaires de ces assemblées de particules dans des milieux hétérogènes. / Emulsions, colloidal suspensions, polymer solutions, bacterial suspensions, ... The dynamical properties of these disperse systems rely on the interplay between the microscopic structure of the dispersed phase, and the flow of the continuous phase.This thesis is devoted to the collective dynamics of suspensions driven out-of-equilibrium. The driving can take place either at the macroscopic scale (advection, uniform strength, ...) or at the microscopic scale (self-propulsion).Our goal is to understand the large scale dynamics of the suspensions on the basis of the symmetries of the interactions between the particles.Our approach is experimental. It relies on microfluidic tools to perform quantitative model experiments. In the first part of the manuscript, I focus on the dynamics of suspensions of passive particles in rigidly confined thin liquid films. In particular, I present experimental and theoretical results on the propagation of linear density waves in advected emulsions. In the second part of the manuscript, I study the collective dynamics of bidimensional assemblies of self-propelled particles embedded in a fluid at rest at infinity. I present our experimental setup based on a new propulsion mechanism for the particles. It enables us to study and understand the emergence of collective motion on the basis of the interactions between the individuals. Finally, I investigate the propagation of non-linear excitations of these assemblies of self-propelled particles in heterogeneous media.

Cette étude concerne l'optimisation, la conception et la caractérisation de microréacteurs, de type multicanaux, appliqués à l'électrosynthèse organique de composés fluorés à intérêt médical tels que le 2-Fluoro- 2-Deoxy-D-Glucose (18FDG). Les microsystèmes ont connu un développement important ces dernières années dans le domaine de la chimie fine où la volonté est de développer des outils toujours plus compétitifs. Les microréacteurs appliqués à la synthèse offrent l’avantage d’un rapport surface sur volume de la zone réactionnelle élevé (> 100 cm-1), ce qui améliore nettement les transferts de masse et d’énergie et permet de traiter de très faibles quantités dans des conditions plus sûres et plus respectueuses de l’environnement. L’élément de base du microréacteur est souvent constitué d’un simple microcanal qu’il est nécessaire de dupliquer pour fournir le débit de production adapté à une application donnée. Ainsi, un microréacteur sera souvent composé d’une série de microcanaux disposés en parallèle et connectant un canal distributeur et un canal collecteur. Cette configuration peut entraîner une faible uniformité de la distribution de l’écoulement dans les différents microcanaux de réaction et il est particulièrement important d’optimiser la géométrie du microréacteur complet pour tendre vers une distribution uniforme des temps de séjour (DTS). Dans le cas de la synthèse électrochimique, les microcanaux sont directement gravés dans deux électrodes placées en vis-à-vis et séparées par une membrane échangeuse d’ions. Une optimisation préliminaire de la DTS au sein d’une électrode composée de microcanaux parallèles de section rectangulaire est réalisée. L’arrivée et la sortie du fluide s’effectue par l’intermédiaire de deux canaux distributeur et collecteur de section également rectangulaire, mais non constante. L’optimisation vise à déterminer une évolution linéaire optimale de la largeur de ces canaux distributeur et collecteur. Un modèle analytique basé sur des hypothèses simplificatrices permet de calculer les différentes pertes de charge ainsi que les débits dans chaque microcanal, dans le cas d’un écoulement laminaire de liquide. Les résultats obtenus sont ensuite confirmés par des simulations numériques 3-D, plus précises. Un modèle hybride combinant les simulations numériques pour les canaux distributeur et collecteur et le modèle analytique pour les microcanaux parallèles est également développé. Il permet d’augmenter la finesse du maillage dans les zones sensibles de l’écoulement, sans nécessité d’accroître les ressources informatiques (mémoire et temps de simulation). Les résultats obtenus montrent un très bon accord entre les simulations numériques 3-D, le modèle hybride et le modèle analytique. Sur un exemple de 10 microcanaux parallèles, il est montré que dans le cas de la géométrie initiale, pour laquelle les canaux collecteur et distributeur sont de section constante, des écarts de l’ordre de 50 % existent entre les débits traversant les microcanaux latéraux et centraux. Après optimisation, cet écart est réduit à moins de 0,1 %. Le modèle analytique est ensuite étendu au cas d’écoulements gazeux en prenant en compte les effets non linéaires et antagonistes de la raréfaction et de la compressibilité de l’écoulement. La raréfaction est ici caractérisée par un nombre de Knudsen compris entre 0 et 0,1 et se traduit pas des sauts de vitesse à la paroi ; les écoulements dans ce régime modérément raréfié sont alors correctement modélisés par les équations compressibles de Navier Stokes associées à des conditions de glissement du second ordre en Knudsen, en prenant en compte la géométrie tridimensionnelle des microcanaux de réaction et des canaux collecteur et distributeur. / This study focuses on the optimisation, design and characterization of microreactors, of multichannel type, applied to the organic electrosyntheses of fluorinated compounds of medical interest such as the 2-Fluoro-2-Deoxy-D-Glucose (18FDG). Microsystems have known an important development these last years in the field of fine chemicals where the aim is to develop increasingly competitive tools. The microreactors applied to synthesis offer a reaction zone with high surface to volume ratio (> 100 cm-1), which significantly improves mass and energy transfers and allows treating small quantities in safer conditions and a better respect of environment. The basic element of the microreactor is often composed of a single microchannel, which is necessary to duplicate in order to provide the suitable production rate for a given application. Thus, a microreactor is often composed of a series of microchannels arranged in parallel and connecting a distributing channel to a collecting one. This configuration can result in poor uniformity of flow distribution among the reaction microchannels and it is particularly important to optimize the geometry of the microreactor in order to obtain a uniform residence time distribution (RTD). In the case of electrochemical synthesis, microchannels are directly etched into two electrodes facing each other and separated by an ion exchange membrane. A preliminary optimisation of the RTD in an electrode composed of parallel microchannels with rectangular cross-section is performed. The fluid inlet and outlet are connected to a distributing and a collecting channel with non constant rectangular cross-section. The aim of the optimisation is to determine an optimal linear evolution of the width of the distributing and collecting channels. An analytical model based on simplifying assumptions allows calculating the various pressure drops and the flowrate in each microchannel, in the case of a laminar liquid flow. The obtained results are then confirmed by more accurate 3-D numerical simulations. A hybrid model combining numerical simulations for the distributing and collecting channels and the analytical model for the parallel microchannels is also developed. This model allows a more refined mesh in the sensitive areas of the flow, without requiring additional numerical effort (memory and simulation time). The results show a good agreement between the 3-D numerical simulations, the hybrid model and the analytical model. On an example of 10 parallel microchannels, it is shown that in the case of the initial geometry (with a constant cross-section of collecting and distributing channels), the flowrate difference through the lateral and the central microchannels is in the order of 50%. After optimization, this difference is reduced to less than 0.1%. The analytical model is then extended to the case of gas flows, taking into account nonlinear and antagonist effects of rarefaction and compressibility. Rarefaction is characterized by the value of the Knudsen number which remains lower than 0.1; the flow in this moderately rarefied regime is accurately modelled by the compressible Navier-Stokes equations associated with second-order slip boundary conditions, taking into account the three-dimensional geometry of the reaction microchannels and of the collecting and distributing channels.

Orientador: Lauro Tatsuo Kubota / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Quimica / Made available in DSpace on 2018-08-24T12:03:31Z (GMT). No. of bitstreams: 1 Santhiago_Murilo_D.pdf: 3375339 bytes, checksum: 5d945dd23cfef732a3e3d083685bedc0 (MD5) Previous issue date: 2014 / Resumo: Neste trabalho descreve-se a construção e aplicação de dispositivos analíticos 2D e 3D à base de papel com detecção eletroquímica (ePAD). Os dispositivos foram construídos empregando o método de impressão com cera e diferentes tipos de papéis. Eletrodos de ouro foram utilizados juntamente com o conceito da separação cromatográfica em dispositivos microfluídicos. No canal microfluídico à base de papel foi possível realizar a separação de ácido ascórbico e dopamina em 14 minutos. A necessidade por processos de fabricação mais simples e de baixo custo nos motivou a estudar eletrodos de carbono em ePADs. Assim, eletrodos de grafite de lapiseira foram selecionados visando o desenvolvimento de um biossensor para glicose. O biossensor apresentou uma excelente resposta eletroquímica e um tempo de análise de 4 minutos. O mesmo eletrodo de grafite foi acoplado com um sistema de informação para determinação de p-nitrofenol. Assim, foi possível detectar 1,0 mmol L de p-nitrofenol em amostras de água e analisar/interpretar os resultados empregando um celular. Por fim, a necessidade por sistemas eletroquímicos com menores limites de detecção nos impulsionou a fabricar microeletrodos de pasta de carbono. Os microeletrodos foram fabricados em folhas de transparência e acoplados no papel empregando uma configuração do tipo sanduíche. Os dispositivos foram caracterizados eletroquimicamente na presença de cisteína e apresentaram uma constante cinética de 10 L mol s. Um limite de detecção de 4,8 mmol L para cisteína foi obtido empregando um arranjo de microeletrodos. Por fim, os microeletrodos de pasta de carbono foram utilizados para a construção de um biossensor visando a determinação de metil paration. O ePAD foi construído de modo a acomodar o substrato (acetiltiocolina) e a enzima (acetilcolinesterase) no mesmo dispositivo / Abstract: This thesis describes the construction and application of 2D and 3D electrochemical paper-based analytical devices (ePADs). The devices were constructed using the wax printing method and different types of papers. Gold electrodes were employed along with the concept of chromatographic separation in microfluidic devices. By using the paper-based microfluidic channel it was possible to perform the separation of ascorbic acid and dopamine in 14 minutes. The need for simpler and low cost manufacturing processes motivated us to study carbon electrodes in ePADs. Thus, pencil graphite electrodes were selected for the development of a biosensor for glucose. The biosensor exhibited excellent electrochemical response and analysis time of 4 minutes. The same graphite electrode was coupled to an information system for the determination of p-nitrophenol. Thus, it was possible to detect 1.0 mmol L of p-nitrophenol in water samples and analyze/interpret the results using a smartphone. Finally, the need for electrochemical systems with lower limits of detection made us to search for carbon paste microelectrodes. The microelectrodes were fabricated on transparency sheets and coupled on paper using a sandwich-type configuration. The devices were characterized electrochemically in the presence of cysteine and had a rate constant of 10 L mol s. A detection limit of 4.8 mmol L for cysteine was obtained using an array of microelectrodes. By last, carbon paste microelectrodes were used to construct a biosensor in order to determine methyl parathion. The ePAD was constructed to accommodate the substrate (acetylthiocholine ) and enzyme ( acetylcholinesterase ) in the same device / Doutorado / Quimica Analitica / Doutor em Ciências

abstract: There is increasing interest and demand in biology studies for identifying and characterizing rare cells or bioparticle subtypes. These subpopulations demonstrate special function, as examples, in multipotent proliferation, immune system response, and cancer diagnosis. Current techniques for separation and identification of these targets lack the accuracy and sensitivity needed to interrogate the complex and diverse bioparticle mixtures. High resolution separations of unlabeled and unaltered cells is an emerging capability. In particular, electric field-driven punctuated microgradient separations have shown high resolution separations of bioparticles. These separations are based on biophysical properties of the un-altered bioparticles. Here, the properties of the bioparticles were identified by ratio of electrokinetic (EK) to dielectrophoretic (DEP) mobilities. As part of this dissertation, high-resolution separations have been applied to neural stem and progenitor cells (NSPCs). The abundance of NSPCs captured with different range of ratio of EK to DEP mobilities are consistent with the final fate trends of the populations. This supports the idea of unbiased and unlabeled high-resolution separation of NSPCs to specific fates is possible. In addition, a new strategy to generate reproducible subpopulations using varied applied potential were employed for studying insulin vesicles from beta cells. The isolated subpopulations demonstrated that the insulin vesicles are heterogenous and showed different distribution of mobility ratios when compared with glucose treated insulin vesicles. This is consistent with existing vesicle density and local concentration data. Furthermore, proteins, which are accepted as challenging small bioparticles to be captured by electrophysical method, were concentrated by this technique. Proteins including IgG, lysozyme, alpha-chymotrypsinogen A were differentiated and characterized with the ratio factor. An extremely narrow bandwidth and high resolution characterization technique, which is experimentally simple and fast, has been developed for proteins. Finally, the native whole cell separation technique has also been applied for Salmonella serotype identification and differentiation for the first time. The technique generated full differentiation of four serotypes of Salmonella. These works may lead to a less expensive and more decentralized new tool and method for transplantation, proteomics, basic research, and microbiologists, working in parallel with other characterization methods. / Dissertation/Thesis / Doctoral Dissertation Chemistry 2020

Nous avons pour but de développer un système microfluidique en gouttes, capable, à l’échelle de la cellule/bactérie unique, de détecter et de co-localiser plusieurs marqueurs génétiques, en utilisant une version digitale et multiplexée de la réaction de polymérisation en chaîne (PCR). Les systèmes de PCR digitale actuellement commercialisés ne le permettent toujours pas. Un tel prototype garantira la présence de multiples marqueurs à l’intérieur d’un même génome, ce qui permettra l’identification du pathogène avec précision et un taux de faux-positifs proche de zéro. Comme première application, nous démontrerons la possibilité de co-localiser quatre gènes de virulence de la souche O157:H7 d’Escherichia coli, un pathogène majeur, qui est détecté dans des échantillons alimentaires ou provenant de fèces cliniques pouvant aussi contenir des E. coli non pathogènes porteuses d’une partie des gènes de virulence. Avant de procéder à des tests TaqMan multicolores en point final, E. coli sera d’abord encapsulée dans des gouttes micrométriques et lysée par la chaleur in situ. Notre objectif est de démontrer que ce test peut être appliqué avec succès à un petit ensemble d’échantillons cliniques ou alimentaires / We aim to develop a prototype of droplet-based microfluidic system capable of detecting and colocalizing multiple genetic markers at the single cell/bacteria level, using the Polymerase Chain Reaction (PCR) in a digital multiplexed version. This cannot be achieved using current commercial digital PCR systems, and should increase the sensitivity and reliability of the detection of pathogens. Importantly, the system will guarantee the presence of multiple markers within the same genome and enable accurate identification, and bring the false positive rate close to zero. As a first application, we will demonstrate the possibility to co-localize 3 virulence genes in the E.coli strain O157:H7, a major foodborne pathogen, which has to be detected in clinical feces samples or food samples, which may also contain non pathogenic E. coli carrying only a subset of these virulence genes. E. Coli will be encapsulated in micrometric droplets, lysed by heating in situ prior performing a multicolour end-point Taqman assay. Our objective is to demonstrate that this test can be successfully applied to real clinical or food samples

La maladie de Huntington (MH) est une maladie neurodégénérative avec une transmission dominante, qui entraîne la mort dans les 15 à 20 ans suivant les premiers signes pathologiques. Le gène muté dans la MH contient une répétition de trinucléotide CAG instable qui code pour une expansion de polyglutamine (polyQ) dans la protéine huntingtine (HTT). Lorsque le gène code pour une protéine avec plus de 35 glutamines, il déclenche un dysfonction puis une mort neuronale notamment dans le striatum et le cortex, entrainant l'apparition de symptômes cognitifs, psychiatriques et moteurs. HTT est exprimée dans de nombreux tissus et est impliquée dans diverses fonctions cellulaires. Il est admis que dans la MH, l'expansion polyQ conduit à un gain de nouvelles fonctions toxiques, mais également à une perte des fonctions neuroprotectrices de HTT sauvage. Avant même l'apparition des premiers symptômes, des dysfonctions existent au sein du réseau neuronal corticostriatal. Cependant, les études in vivo des dysfonctions précoces au sein de ce réseau sont techniquement difficiles à l’échelle cellulaire.Le premier enjeu de ma thèse a été de reconstituer et de caractériser in vitro le réseau corticostriatal. Pour cela nous avons utilisé une plateforme microfluidique, compatible avec de la vidéomicroscopie haute résolution, dans laquelle chaque compartiment est identifié et où la progression de la croissance axonale à la formation des synapses est régulée. Nous avons observé des défauts majeurs au sein des différents compartiments du réseau corticostriatal, de la dynamique présynaptique à des défauts de structure et de transmission synaptiques, ainsi que des dysfonctions du trafic et des voies de signalisation post-synaptique. De manière intéressante, nous avons montré que le statut génétique du compartiment présynaptique était nécessaire et suffisant pour altérer ou restaurer le réseau corticostriatal.Le second aspect de ma thèse a été d’étudier la dynamique intracellulaire, depuis le réticulum endoplasmique jusqu’au compartiment final, au sein de cellules modèles de la MH. Pour cela nous avons utilisés le système RUSH (Retention Using Selective Hooks) couplé à une molécule utilisant la voie standard de biosynthèse des protéines. Au sein de cellules modèles de la MH, la dynamique intracellulaire est perturbée. L’utilisation de molécules inhibitrices d’une classe d’enzyme au sein de cellules modèles de la MH, est capable de restaurer une dynamique intracellulaire. En particulier, grâce au système microfluidique, nous avons montré qu’une molécule a la capacité de restaurer un réseau corticostriatal sauvage. Les études pharmacologiques de passage ont montré que cette molécule a un haut pouvoir de passage de la barrière hémato encéphalique. Le traitement pendant un mois de souris modèles de la MH et l’analyse de leur coordination motrice et de leur état anxiodépressif suggère que cette molécule est capable d’améliorer les symptômes chez les souris MH.Ces travaux ont permis de mettre en évidence 1/ l’importance du cortex comme région d’intérêt thérapeutique dans la MH, et 2/ le trafic de protéines comme une nouvelle cible thérapeutique. / Huntington Disease (HD) is a mid-life onset inherited neurodegenerative disorder that leads to death within 15 to 20 years after appearance of the first symptoms. The defective gene in HD contains an unstable trinuocleotide CAG repeat which encodes for a polyglutamine stretch (polyQ) in the huntingtin (HTT) protein. When the number of glutamines coded by the gene exceeds 35 repeats, it triggers neuronal dysfunction and death, affecting in particular the striatum and the cortex, causing cognitive, psychiatric, and motor symptoms. HTT is widely expressed and it is involved in numerous functions. In HD, it is accepted that, the polyQ strech leads to a gain of toxic functions, and converselyto a loss of neuroprotective functions of wild-type HTT. Long before the appearance of the first symptoms, dysfunctions exist within the corticostriatal neuronal network. However, in vivo studies of early cell dysfunction in this network are technically difficult, especially at the subcellular resolution.The first objective of my thesis was to reconstitute and characterize the corticostriatal network in vitro. We used a microfluidic device in which each neuronal compartment is identified and in which the progression from axonal growth to synapse regulation is controlled. We observed major defects in the different compartments of the corticostriatal circuit, from presynaptic dynamics to synaptic structure and transmission and to postsynaptic traffic and signaling. Importantly, the genetic status of the presynaptic compartment was necessary and sufficient to alter or restore the circuit.The second aspect of my thesis was to study the intracellular dynamics, from the endoplasmic reticulum to the final compartment, in cellular models of HD. For this we used the RUSH system (Retention Using Selective Hooks) coupled to a molecule using the standard pathway of protein biosynthesis. In cellular models of HD, intracellular dynamics are disrupted. We found that molecules targeting enzyme protein trafficking restore intracellular dynamics in HD cells. In particular, thanks to the microfluidic system, we showed that a given molecule has the capacity to restore a HD mutant corticostriatal network. Pharmacological studies showed that this molecule has a high power of passage of the blood brain barrier. One month treatment of HD mouse models and their behavioral tests for motor and anxiety-depressive symptoms suggest that the molecule is able to ameliorate symptoms.These studies made it possible to highlight 1 / the importance of the cortex as a key region of therapeutic interest in HD, and 2 / protein trafficking as a new therapeutic target in HD.

Blood flow through microcirculation in both simple and complex geometry has been difficult to predict due to the composition and complex behavior of blood at the microscale. Blood is a dense suspension of deformable red blood cells that is comparable in dimensions to the microchannels that it flows through. As a result, rheological properties at the microscale can vastly differ from bulk rheological properties due to non-continuum effects. To further develop our understanding of blood microflow; experimental techniques should be explored. In this work, we explore micro-particle image velocimetry (μPIV) and two-beam fluorescence cross-correlation spectroscopy (2bFCCS) in the application of characterizing blood in microflow conditions. For the development of the μPIV analysis, a polydimethylsiloxane co-flow channel is used to observe blood flow in controlled conditions. Flow conditions (velocity profile and blood layer thickness) are selected based on an analytical model and compared to experimental measurement. The experimental results presented indicate that current flow conditions are inadequate in providing a controlled rate of shear on the blood layer in the co-flow channel and further optimization are required to improve the measurement of the velocity profile. For the development of the 2bFCCS application for blood flow analysis, a wide glass capillary microfluidic device is used to complete the verification of fluorescence fluid admissibility, the effect of laser intensity on inducing photobleaching and the velocity measurement performance. The experimental measurement of the velocity profile is validated against the theoretical profile for a rectangular channel. Results of the velocity profile of high concentration red blood cells show promise in the technique’s ability to measure blood microflows closer to physiological conditions.

京都大学 / 新制・課程博士 / 博士(工学) / 甲第23233号 / 工博第4877号 / 新制||工||1761(附属図書館) / 京都大学大学院工学研究科化学工学専攻 / (主査)教授 宮原 稔, 教授 佐野 紀彰, 教授 松坂 修二 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM

Microfluidic paper-based analytical devices (microPADs) are an emerging platform for point-of-care diagnostic tests for use by untrained users with potential applications in healthcare, environmental monitoring, and food safety. These devices can be developed for a multitude of different tests, many of which employ enzymes as catalysts. Without specialized treatment, some enzymes tend to lose their activity when stored on microPADs within 48 hours, which is a major hurdle for taking these types of devices out of the laboratory and into the real world. This work focused on the development of simple methods for stabilizing enzymes by applying polymers to chromatography paper. The longterm stabilization was exlored and SU-8 of various concentrations was found to stabilize horseradish peroxidase for times in excess of two weeks. A variety of microPAD fabrications, enzyme dispensing methods, and substrate delivery techniques were explored.

The diploma thesis deals with measuring pressure in microfluidic systems. The theoretical part of the work is devoted to microfluidics, pressure in liquids, pressure measurement, distribution of pressure sensors, and their specifications. Then follows the hardware and software solution of the measuring system for measuring the pressure in the microfluidic system using microprocessor technology. The practical part covers the hardware and software implementation of the measuring system.