Department of Chemistry / PhD (Chemistry) / This thesis is concerned with the computational study of naphthylisoquinoline alkaloids having antimalarial properties. The study was considered interesting because of the importance of gathering information on antimalarial molecules and because these molecules had not yet been studied computationally. The alkaloids considered in this study had been isolated from tropical lianas belonging to the Dioncophyllaceae and Ancistrodaceae families. They comprise alkaloids with both monomeric and dimeric structures. The monomeric structures consist of one unit and the dimeric ones of two units, with each unit containing a naphthalene moiety and an isoquinoline moiety. 33 monomeric molecules were studied, which represent a large portion of all the monomeric naphthylisoquinoline alkaloids isolated so far. Two dimeric molecules with antimalarial activity were investigated, namely, jozimine A2 and mbandakamine A. A third dimeric molecule, with a structure close to that of jozimine A2 but different activity (michellamine A, anti-HIV) was also calculated for comparison purposes. This work utilised electronic structures methods and involved the conformational study of all the molecules selected to identify the stabilising factors in vacuo and in solution. Two levels of theory (HF/ 6-31G (d,p) and DFT/B3LYP/ 6-31+G(d,p)) were utilised to compare their performance for compounds of this type, also in view of a future study extending to other compounds of the same class. The molecules were firstly studied in vacuo and secondly in three different solvents – chloroform, acetonitrile and water – characterized by different polarities and different H-bonding abilities. Quantum chemical calculations in solution were carried out using the Polarisable Continuum Model (PCM). The main stabilizing factors are the presence and types of intramolecular hydrogen bonds (IHBs), which are the dominant factors, and also the mutual orientation of the moieties. The possible IHBs comprise OH⋯O (or OH⋯N and NH⋯O for mbandakamine A) and other H-bond types interactions such as OH⋯ and CH⋯O (or CH⋯O and CH⋯N for mbandakamine A). The moieties prefer to be perpendicular one to another, which is a common tendency of aromatic vii systems. In monomeric structures, there may be only one OH⋯O and possibly also one of each of the other two types of IHBs interactions. In dimeric structures, there may be up to four (five in mbandakamine A) OH⋯O IHBs simultaneously and also other H-bond type interactions. The results provide a comprehensive picture of the molecular properties of these compounds, such as conformational preferences, dipole moments, HOMO-LUMO energy gaps, harmonic vibrational frequencies, solvent effect and influence of the solvent on molecular properties which respond to polarisation by the solvent. Altogether, these results may contribute to a better understanding of their biological activity and to the design of molecular structures with enhanced biological activity. This is the reason of focusing the efforts on the investigation of chemical and physical properties of these alkaloids molecules. / NRF

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In dieser Arbeit wurde die Ionisation einiger zweiatomiger Moleküle (H2, N2 und O2) in intensiven Laserfeldern untersucht. Hierbei wurden verschiedene Modelle zur Beschreibung der Tunnelionisation sowohl untereinander als auch mit der Lösung der zeitabhängigen Schrödingergleichung (TDSE) verglichen. Die kernabstandsabhängige Ionisationswahrscheinlichkeit wurde für verschiedene Intensitäten betrachtet und die Gültigkeit modifizierter atomarer bzw. Molekularer Modelle zur Beschreibung der Tunnelionisation analysiert. Es wurde herausgefunden, dass Modelle, die auf der quasistatischen Näherung beruhen (wo die Ionisation unabhängig von der Frequenz des Laserfeldes ist), nur in einem kleinem Frequenz- und Intensitätsbereich hinreichend genaue Ergebnisse liefern, dem Tunnelregime. Modelle mit einem frequenzabhängigen Faktor stimmen hingegen sowohl im Tunnel- als auch im Mehrphotonenregime mit den genaueren TDSE Ergebnissen überein. Weiterhin wird auch die Abweichung zur Franck-Condon Näherung verdeutlicht. Es wurde ein kleiner Einfluss auf die Revival-Zeit des im Wasserstoffmolekül-Ion gestarteten Wellenpakets gefunden. Die Berücksichtigung von Bond-Softening führt weiterhin zu einer Verringerung der Revival-Zeit mit steigender Spitzenintensität des Lasers. Außerdem wird die Anisotropie der Ionisation von H2 als Funktion der Laserintensität in linear und zirkular polarisiertem Licht mit dem molekularen Tunnelmodell MO-ADK untersucht. Gute Übereinstimmung mit den experimentellen Beobachtungen wurde gefunden, insbesondere wenn der Effekt des Fokusvolumens des Laserfeldes berücksichtigt wird. Die Anwendbarkeit des Zwei-Zentren-Modells auf größere Moleküle, N2 und O2, wird ebenfalls getestet. Es wird beobachtet, dass dies für N2 (symmetrisches HOMO) funktioniert, für O2 (asymmetrisches HOMO) jedoch nicht. / The ionization of some diatomic molecules, H2, N2, and O2, exposed to intense laser fields has been studied by comparing various molecular tunneling–ionization models with each other and with the numerical solution of the time-dependent Schrödinger equation (TDSE). The internuclear-distance dependent ionization yields over a wide range of laser peak intensities are investigated and the validity of the modified atomic and molecular tunneling models is examined. It is found that those models that depend on the quasi-static approximation, where ionization is independent on the oscillation frequency of the applied laser field, are useful for laser-induced ionization processes in only a very small region of the frequency and intensity domain of laser fields, i.e. in the tunneling regime. The models that include a frequency dependent factor are in a good agreement with the accurate TDSE calculations in both the multiphoton and the tunneling ionization regimes. Furthermore, the deviation from Franck-Condon-like distribution is also clarified. A small effect on the revival time of the vibrational wavepacket of hydrogen molecular ion, due to this deviation, has been found. Consideration of the bond-softening effect leads to a decrease in the revival time with increasing laser-peak intensity. The anisotropy of H2 as a function of laser intensity in linear and circular polarized fields using molecular tunneling model (MO-ADK) are also studied and a good agreement with the experimental observations, especially if the focal volume of the laser field is considered, has been obtained. The applicability of the two-center model for larger molecules, N2 and O2, is tested. It is found that it works with N2 (symmetric HOMO) but fails in O2 (ansymmetric HOMO).

The binding of molecular hydrogen to a metal center leads to the elongation of the H−H bond and subsequently to its cleavage along the reaction coordinate for the oxidative addition of H2. There has been considerable interest in the study of the activation of dihydrogen and map out the reaction coordinate for the homolysis of H2 on a metal center. A large number of H2 complexes reported to date possess H−H distances ranging from 0.8 to 1.0 Å. A relatively fewer examples of elongated dihydrogen complexes wherein the H−H distances fall in the range of 1.0 to 1.5 Å, are known. Study of the elongated dihydrogen complexes is of great significance because of its relevance in important catalytic processes such as hydrogenation, hydrogenolysis, and hydroformylation. Objectives The objectives of this work are as follows: (a) Synthesis and characterization of elongated dihydrogen complexes with chelating phosphine coligands by varying the electron donor ability. (b) Trap the various intermediate states in the process of oxidative addition of H2 to a metal center. (c) Map the reaction coordinate for the oxidative addition for the oxidative addition of H2 to a metal center. Results We have synthesized and characterized two new elongated dihydrogen complexes cis-[Ir(H)(η2-S2CH)(η2-H2)(PR3)2][BF4] (PR3 = PCy3, PPh3) wherein hydrogen atom undergoes site exchange between the H2 and the hydride sites. The dynamics of the exchange was studied using NMR spectroscopy. In addition, a series of ruthenium dihydrogen complexes of the type trans-[Ru(Cl)(η2-H2)(PP)][BF4] (PP = 1,2- Synopsis bis(diarylphosphino)ethane) has been synthesized and characterized wherein the aryl group is a benzyl moiety with a substituent (p-fluoro, H, m-methyl, p-methyl, p-isopropyl); in this series of complexes, a small increment in the electron donor ability (decrease in Hammett substituent constants) of the chelating phosphine ligand resulted in an elongation of the H−H bond by a small, yet significant amount. We also synthesized a series of 16-electron dicationic dihydrogen complexes bearing elongated dihydrogen ligand. In addition, we prepared a series of dihydrogen complexes of the type [RuCp/Cp*(PP)(η2-H2)][OTf] (PP = 1,2-bis(diarylphosphino)ethane, 1,2-bis(diarylphosphino)methane, 1,2-bis(dialkylphosphino)methane) bearing elongated H2 ligand (dHH = 1.0 to 1.17 Å); in this series of complexes as well, we found that the H−H bond distances increased as the donor ability of the chelating phosphines increased in small increments, along the reaction coordinate for the oxidative addition of H2 to a metal center. This investigation therefore, has established a very nice correlation between the H−H bond lengths and the Hammett substitutent constants (donor properties) resulting in the construction of dihydrogen complexes along the reaction coordinate for the oxidative addition of H2 to a metal center.