L’ajout de diversité végétale est présenté comme un moyen d’améliorer la durabilité des agrosystèmes. Cependant, il y a encore des manques importants de connaissances sur l’effet de la diversité végétale sur les processus à la base de l’élaboration des rendements. Les systèmes agroforestiers tropicaux couvrent une large gamme de diversité végétale ; ce sont donc de bons modèles pour étudier la relation entre diversité et productivité. Les systèmes agroforestiers de la région de Talamanca au Costa Rica sont particulièrement intéressants car au sein de communautés végétales complexes, ils comprennent des bananiers et des cacaoyers qui sont des cultures de rente importantes et dont la production peut facilement être quantifiée et analysée. Une autre spécificité de ces systèmes est qu’ils présentent des organisations spatiales particulièrement diverses. Analyser comment la diversité des plantes et son organisation influe sur les performances de ces systèmes est particulièrement complexe et nécessite le développement de nouvelles approches. Les objectifs de cette thèse étaient d’étudier : i) quels facteurs affectent la relation entre diversité végétale et productivité ? ii) Comment la diversité végétale influence la productivité globale des systèmes agroforestiers ? et iii) Comment la structure spatiales des communautés de plantes cultivées influence leurs rendements ?Tout d’abord, une méta-analyse a été menée afin d’étudier la relation entre diversité végétale et production dans une très large gamme de systèmes naturels et cultivés. Cette analyse a notamment traité du rôle de la latitude, du climat et de la structure de la canopée sur cette relation. Elle a montré que le gain lié à la diversité végétal tend à diminuer avec la magnitude de cette diversité. Nos résultats montrent également que la réponse de la productivité à la richesse spécifique en plantes dépend énormément du type de communauté considéré, notamment si la communauté comprend des arbres.Ensuite, un réseau de 180 placettes situées dans 20 parcelles d’agriculteurs a été étudié dans la région de Talamanca. Pendant un an, la production de chaque plante a été évaluée. Cette production a ensuite été convertie en revenus en accord avec les prix du marché local. Alors qu’un effet positif de la diversité végétale cultivée a été observé sur le revenu globale (de chaque placette), cet effet était très contrasté si on le considérait séparément pour les différents groupes fonctionnels. Cet effet était positif pour les plantes des groupes appartenant aux strates hautes et négatif pour les plantes des groupes appartenant aux strates basses. Ces résultats suggèrent que la complémentarité entre plantes était plus forte pour les plantes des strates hautes et qu’inversement la compétition était plus forte dans les strates plus basses.La seconde phase de l’analyse des données de ce réseau de parcelles a visé à étudier l’effet du voisinage de chaque bananier ou cacaoyer sur leur production. Une approche d’analyse individu-centrée a été développée afin de déterminer si le nombre de voisins d’un groupe donné dans un rayon donné était un bon prédicteur de la croissance ou du rendement de chaque bananier ou cacaoyer. Les résultats montrent que la distance à laquelle la production d’un bananier ou d’un cacaoyer est affectée par ses voisins dépend de la taille de ces. De manière surprenante, les grands arbres ont eu un effet plus faible que les arbres plus petits. Cela suggère que des densités modérées de grands arbres pourraient être compatibles avec une production de bananiers et de cacaoyer avec un haut niveau de rendement. Ces résultats ont été discutés en termes de complémentarité et compétition pour la lumière. Des pistes d’organisation sont proposées et discutées au regard de la maximisation des rendements des cultures de rente et des autres cultures mais aussi dans la provision de services écosystémiques au sens large. / Adding plant diversity is increasingly presented as a mean to improve the sustainability of agrosystems. However, there is still a lack of knowledge on how plant functional diversity alters processes that support production. Because they cover a broad range of plant diversity, agroforestry systems in the tropics are a good case study to better understand the diversity-production relation. Agroforestry systems in the Talamanca region in Costa Rica are particularly interesting because among the cultivated plants they encompass, banana and cacao are two cash crops of major importance and for which production can easily be quantified and analyzed. Another specificity of these systems is that their vertical and horizontal organization is particularly diverse. Understanding how plant diversity and its organization alter the performances of these complex systems is particularly challenging and requires developing new approaches. The objectives of this thesis were to address the following questions: i) Which factors affect the relationship between plant diversity and productivity? ii) How plant diversity influences the global productivity of agroforestry systems? and iii) How the spatial structure of the plant community affects yields?First, a meta-analysis was carried out to address the diversity-production issue among a very broad range of systems world-wide. This analysis focused on how latitude, climate, and canopy structure modify the effect of plant richness on productivity of agricultural and natural ecosystems. It showed that the gain per unit of diversity added decreased as plant richness increased. Our findings also showed that the response of productivity to plant richness largely depends on the type of plants in the community, especially if the community includes trees.Then, we extensively studied the diversity and the productivity of 180 plots located within 20 fields in the Talamanca region. A global evaluation of the productivity of these systems was possible with the estimation of the production of each plant during 1 year. This production was converted into income according to local market prices. While we observed a global positive effect of plant diversity on global income, this effect was contrasted according to the functional group considered (banana, cacao, other fruits, timber, firewood. When considering the functional group separately, there was a positive effect of plant diversity for higher strata groups and a negative effect for lower strata groups. This suggested that complementarity between plants was stronger than competition for those plants occupying the higher strata of the canopy but that competition was stronger than complementarity for plants occupying the lower strata of the canopy.The second part of the analysis of the Talamanca fields dataset focused on the effect of neighbouring plants on the production of banana and cacao plants. An individual-based analysis was developed to determine whether the number of neighbouring plants of a given functional groups explained the potential yield of each banana or cacao plant. We found that the distance at which other plants alters the yield of banana or cacao plants was greater for larger functional groups (fruit or wood trees) than for smaller ones (cacao trees or banana plants). Interestingly, higher strata trees had a smaller effect than lower strata trees, suggesting that moderate densities of tall trees could be compatible with high banana and cacao production. These findings were discussed in terms of complementary and competition with respect to the availability of light at higher and lower strata of the canopy. On an applied perspective, our results suggest that productivity could be maximized by a reasonably number of plant species, and then we proposed new direction to organize fields in order to maximize the production of cash crops while providing supplementary income for farmers and ecosystem services.

I. An original methodological discussion is proposed on the problem of the typology of tropical rain forest’s plant communities, based on the study of forest types across gradients of continentality and elevation, within Atlantic central Africa. These investigations were based on the statement that the main problems in forest typology are related to the non-zonal or zonal character of the different vegetation types and to non considering the relations and differences between forest strata. II. Field data consisted in phytosociological homogeneous sample plots localized within different recognized phytogeographical entities, in a region of tropical Africa where these entities are known to be well conserved. A total of 37 such plots were inventoried in the region extending from the littoral forests of Ndoté, Equatorial Guinea, which are wet evergreen forests, to the continental forests of the Dja, Cameroon, known as evergreen seasonal forests. The studied region also included the oriental Atlantic forests of Equatorial Guinea, known as moist evergreen forests or caesalp forests. In various parts of this continentality gradient, some plots were localized within climax non-zonal formations, namely the submontane rain forests. The emphasis was put on the vegetation of the Monte Alén National Park. The sampling methodology was willing to be as "complete ", including all strata, "quantitative ", enumerating all individuals, and "representative ", within each stratum, as possible. These multi-layers plots were realised using nested sub-plots, with a sampling size of 100 individuals for every ligneous stratum recognized (dominant trees, dominated trees and shrubs) and a sampling size of 200m² for the herbaceous and suffrutex stratum. Forest types were defined independently for each stratum and the differences were analysed. A method was proposed for the simultaneous analysis of all floristic data, converting and standardizing the values from ligneous strata, on the one hand, and from understorey strata, on the other hand. III. Ten forest types were described using IndVal and discussed in the general context of the guineo-congolian region, from a syntaxonomic view point (agglomerative classification) and from a phytogeographical view point (divisive classification). Homologies between these two approaches are described. The proposed phytogeographical system is based on an "open " conception of hierarchical classifications, combining advantages of agglomerative and divisive classifications. In concrete terms, the non-zonal criteria, for example the submontane variants, are categorised separately and in analogy with the zonal criteria, related to the usual phytochoria. Analysis of ecological relationships for the 10 communities showed that the main variables related to the floristic variability in our mainland rain forests are elevation, rainfall, hygrometry (estimated using bryophytes cover levels) and distance to the ocean. The two extremes on the vertical microclimatic gradient, dominant trees stratum and herbaceous stratum, give similar typologies, however canonical analysis showed that for the herbaceous layer, non-zonal variables (hygrometry and elevation) were gaining more importance when the influence of the two zonal variables was attenuated. In every case, spatial autocorrelation was less important than the environment in explaining floristic variability but its role increased in the spatial arrangement of understorey species, whose dispersal capacity is generally lower than canopy trees. The phytosociological, phytogeographical and ecological description of forest types is accompanied by a physiognomical description using biological types spectrum, as well as architectural models, leaf sizes, etc. With regard to diversity, we have demonstrated that species richness was higher from upper to lower strata because of the accumulation in lower strata of species from various strata. On the other hand, the proper stratum diversity, i.e. the structural set, decreased from dominant trees to shrubs. The proper diversity of the herb layer showed relatively high figures mainly due to the higher individual density in relation to the existence of microstrata. Within the 37 sample plots, 1,050 taxa have been identified to species or morpho-species levels, for a total of 25,750 individuals. These taxa represent 442 genus among 104 families. The richest forest type is found on the foothills of the Niefang range, on the windward side. This forest type is also characterised by a high number of oligotypic genus and by species belonging to functional types indicators of glacial refuges. These functional types are defined on the basis of the dispersal capacity and on kind of stand needed for effective germination. We formulated the hypothesis that this kind of "foothills refuge ", characterised by his zonal nature, could have been one of the rare refuges for species from mainland rain forests, while montane and fluvial refuges would mainly have preserved species from non-zonal forest types: (sub)montane and riverine. Based on indicator species of submontane forests, a potential distribution map of this forest type has been realised at the Atlantic central African scale. More than 400 submontane forest localities have been mapped. These forests begin at 400m of altitude near the ocean, and progressively at higher altitude for increasing distance to the ocean. Many lowland localities also comprised submontane species, which could indicate the existence of ecological transgressions. These transgressions would allow migratory tracks for submontane species between isolated mountain ranges, not only during glacial periods, through heights at the northern and southern borders of the congo basin, but also contemporarily through the lowland riverine forest network, in the centre of this basin. Finally, a special attention has been attributed to littoral forests and to some cases of choroecological transgressions, coupled to the ecological equalization phenomenon.

I. An original methodological discussion is proposed on the problem of the typology of tropical rain forest’s plant communities, based on the study of forest types across gradients of continentality and elevation, within Atlantic central Africa. These investigations were based on the statement that the main problems in forest typology are related to the non-zonal or zonal character of the different vegetation types and to non considering the relations and differences between forest strata.<p><p>II. Field data consisted in phytosociological homogeneous sample plots localized within different recognized phytogeographical entities, in a region of tropical Africa where these entities are known to be well conserved. A total of 37 such plots were inventoried in the region extending from the littoral forests of Ndoté, Equatorial Guinea, which are wet evergreen forests, to the continental forests of the Dja, Cameroon, known as evergreen seasonal forests. The studied region also included the oriental Atlantic forests of Equatorial Guinea, known as moist evergreen forests or caesalp forests. In various parts of this continentality gradient, some plots were localized within climax non-zonal formations, namely the submontane rain forests. The emphasis was put on the vegetation of the Monte Alén National Park.<p><p>The sampling methodology was willing to be as "complete ", including all strata, "quantitative ", enumerating all individuals, and "representative ", within each stratum, as possible. These multi-layers plots were realised using nested sub-plots, with a sampling size of 100 individuals for every ligneous stratum recognized (dominant trees, dominated trees and shrubs) and a sampling size of 200m² for the herbaceous and suffrutex stratum.<p><p>Forest types were defined independently for each stratum and the differences were analysed. A method was proposed for the simultaneous analysis of all floristic data, converting and standardizing the values from ligneous strata, on the one hand, and from understorey strata, on the other hand.<p><p>III. Ten forest types were described using IndVal and discussed in the general context of the guineo-congolian region, from a syntaxonomic view point (agglomerative classification) and from a phytogeographical view point (divisive classification). Homologies between these two approaches are described. The proposed phytogeographical system is based on an "open " conception of hierarchical classifications, combining advantages of agglomerative and divisive classifications. In concrete terms, the non-zonal criteria, for example the submontane variants, are categorised separately and in analogy with the zonal criteria, related to the usual phytochoria.<p><p>Analysis of ecological relationships for the 10 communities showed that the main variables related to the floristic variability in our mainland rain forests are elevation, rainfall, hygrometry (estimated using bryophytes cover levels) and distance to the ocean. The two extremes on the vertical microclimatic gradient, dominant trees stratum and herbaceous stratum, give similar typologies, however canonical analysis showed that for the herbaceous layer, non-zonal variables (hygrometry and elevation) were gaining more importance when the influence of the two zonal variables was attenuated. In every case, spatial autocorrelation was less important than the environment in explaining floristic variability but its role increased in the spatial arrangement of understorey species, whose dispersal capacity is generally lower than canopy trees. The phytosociological, phytogeographical and ecological description of forest types is accompanied by a physiognomical description using biological types spectrum, as well as architectural models, leaf sizes, etc.<p><p>With regard to diversity, we have demonstrated that species richness was higher from upper to lower strata because of the accumulation in lower strata of species from various strata. On the other hand, the proper stratum diversity, i.e. the structural set, decreased from dominant trees to shrubs. The proper diversity of the herb layer showed relatively high figures mainly due to the higher individual density in relation to the existence of microstrata. Within the 37 sample plots, 1,050 taxa have been identified to species or morpho-species levels, for a total of 25,750 individuals. These taxa represent 442 genus among 104 families. The richest forest type is found on the foothills of the Niefang range, on the windward side. This forest type is also characterised by a high number of oligotypic genus and by species belonging to functional types indicators of glacial refuges. These functional types are defined on the basis of the dispersal capacity and on kind of stand needed for effective germination. We formulated the hypothesis that this kind of "foothills refuge ", characterised by his zonal nature, could have been one of the rare refuges for species from mainland rain forests, while montane and fluvial refuges would mainly have preserved species from non-zonal forest types: (sub)montane and riverine.<p><p>Based on indicator species of submontane forests, a potential distribution map of this forest type has been realised at the Atlantic central African scale. More than 400 submontane forest localities have been mapped. These forests begin at 400m of altitude near the ocean, and progressively at higher altitude for increasing distance to the ocean. Many lowland localities also comprised submontane species, which could indicate the existence of ecological transgressions. These transgressions would allow migratory tracks for submontane species between isolated mountain ranges, not only during glacial periods, through heights at the northern and southern borders of the congo basin, but also contemporarily through the lowland riverine forest network, in the centre of this basin. Finally, a special attention has been attributed to littoral forests and to some cases of choroecological transgressions, coupled to the ecological equalization phenomenon.<p> / Doctorat en sciences agronomiques et ingénierie biologique / info:eu-repo/semantics/nonPublished