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<p> A phosphotriester synthesis for short deoxy oligomers was developed based on the RNA synthesis developed in Neilson's laboratory. This synthesis parallels that of Catlin and Cramer (1973) but differs significantly in a number of procedures and reagents used and represents an overall improvement in every aspect of the previous method. This synthetic procedure allows the synthesis of sufficient quantities of DNA for 1H-NMR analysis. The following sequences were successfully synthesized using this procedure: d(GCA) d(AGCT) d(ACGT) d(ACGTp) d (ACGTACGTp).</p> <p> It was found by variable temperature 1H-NMR that the trimer and the tetramer duplexes had a very low Tm (0-10°C) as compared to their RNA counter-parts which had Tms between 29-34°C. This demonstrates quantitatively that the short DNA duplex is significantly less stable than the short RNA duplex. Consequently, sequences of at least five or six bases in length will be required for model studies of DNA duplex stabilities using variable temperature NMR methods.</p> <p> A CD study of d(ACGTACGTp) in conditions of low salt (1M NaCl) and high salt (5M NaCl) demonstrated that a high salt B to Z-helix transition did not occur. Instead, the duplex remained in the right handed B form in both low and high salt.</p> / Thesis / Master of Science (MSc)

<p> This thesis presents a study on silane based polymerization in two parts. </p> <p> In Part A, diphenylvinylsilane (1) underwent oligomerization with initiation by azo(bisisobutyronitrile) (AIBN) or benzoyl peroxide (BPO). The vinyl groups were preferentially consumed under either set of conditions. Several products were isolated; these included oligomers 3, an AIBN adduct 4, a dimer 5, and a trimer 6. The residual SiH moieties could be subsequently coupled hydrosilylatively with alkynes or vinylsilicones. The efficiency of the radical reactions was very low. 15% starting material was recovered even with 200 mol% of initiating radicals added to the reaction mixture. The relative radical reactivities of the two functional groups is discussed.</p> <p> In Part B, 1 was radically copolymerized with styrene and methyl methacrylate (MMA). From the results of infrared and 1H NMR it was determined that 1 participated in copolymerization via a vinyl type polymerization and not in the form of a hydrogen-transfer type polymerization. Residual SiH groups along the backbone of the polymer remained reactive. A vinylsilicone and 9-vinylanthracene were grafted onto the copolymer from MMA and 1 by hydrosilylation and radical methods, respectively.</p> / Thesis / Master of Science (MSc)

Yes / Background:With current treatments for Alzheimer’s disease (AD) only providing temporary symptomatic benefits, disease modifying drugs are urgently required. This approach relies on improved understanding of the early pathophysiology of AD. A new hypothesis has emerged, in which early memory loss is considered a synapse failure caused by soluble amyloid-β oligomers (Aβo). These small soluble Aβo, which precede the formation of larger fibrillar assemblies, may be the main cause of early AD pathologies. Objective:The aim of the current study was to investigate the effect of acute administration of stabilized low-n amyloid-β1-42 oligomers (Aβo1-42) on cognitive, inflammatory, synaptic, and neuronal markers in the rat. Methods:Female and male Lister Hooded rats received acute intracerebroventricular (ICV) administration of either vehicle or 5 nmol of Aβo1-42 (10μL). Cognition was assessed in the novel object recognition (NOR) paradigm at different time points. Levels of inflammatory (IL-1β, IL-6, TNF-α), synaptic (PSD-95, SNAP-25), and neuronal (n-acetylaspartate, parvalbumin-positive cells) markers were investigated in different brain regions (prefrontal and frontal cortex, striatum, dorsal and ventral hippocampus). Results:Acute ICV administration of Aβo1-42 induced robust and enduring NOR deficits. These deficits were reversed by acute administration of donepezil and rolipram but not risperidone. Postmortem analysis revealed an increase in inflammatory markers, a decrease in synaptic markers and parvalbumin containing interneurons in the frontal cortex, with no evidence of widespread neuronal loss. Conclusion:Taken together the results suggest that acute administration of soluble low-n Aβo may be a useful model to study the early mechanisms involved in AD and provide us with a platform for testing novel therapeutic approaches that target the early underlying synaptic pathology.

Les récepteurs AMPAR sont les principaux responsables de la transmission excitatrice rapide dans le système nerveux central, y compris dans les neurones d’hippocampe étudiés ici. Ils sont très dynamiques dans la membrane. Au sein des épines dendritiques, ils peuvent se déplacer par traffic membranaire entre les compartiments intracellulaires et la membrane plasmique. Une fois à la surface, ils se déplacent par diffusion latérale et peuvent s'ancrer réversiblement avec des protéines de la densité postsynaptique ou retourner dans des compartiments endocytaires. Les oligomères Aß augmentent l'endocytose des récepteurs AMPAR, diminuent la densité des épines dendritique et provoquent des défaillances globales dans la transmission synaptique excitatrice. Ces effets, sont englobés dans le terme "synaptotoxicité des oligomères Aß" et sont un domaine principal d'étude de l'étiologie de la maladie d'Alzheimer. Wnt5a un ligand Wnt endogène connu pour activer la voie non-canonique dans les neurones d'hippocampe, génère une augmentation des courants excitateurs et des aggrégats de PSD95 et protége les neurones contre la synaptotoxicité des oligomères Aβ. Compte tenu du fait que Wnt5a semble contrecarrer les effets nocifs causés par les oligomères Aß, nous avons procédé à l'étude du mécanisme par lequel Wnt5a protège de la synaptotoxicité des oligomères Aβ. Cela nous a conduit à évaluer l'effet de Wnt5a sur l'un des facteurs dans la transmission glutamatergique, la dynamique des récepteurs AMPAR. En utilisant la microscopie à super-résolution dans les neurones d'hippocampe vivants et fixés, nous avons trouvé que Wnt5a module la dynamique et la localisation des récepteurs AMPAR. Plus précisément, Wnt5a stabilise les récepteurs AMPAR dans les sites synaptiques et extrasynaptiques. Ceci est corrélé avec une augmentation de la co-localisation et de l'interaction entre GluA2 et PSD95. Ces effets ne sont exercés que par l'activation non-canonique de la signalisation Wnt, à travers le ligand Wnt5a et non par les effets canoniques de Wnt7a. De manière intéressante, la pré-incubation de Wnt5a prévient la toxicité des oligomères Aß et maintient la dynamique basale des récepteurs AMPAR. Nos données suggèrent que Wnt5a empêche les effets des oligomères Aβ en favorisant leur stabilisation dans les sites synaptiques. / AMPARs (AMPARs) are responsible for most fast excitatory synaptic transmission in the central nervous system, including hippocampal neurons studied here. AMPARs are highly dynamic in the plasma membrane. Within dendritic spines, they move by membrane trafficking between intracellular compartments and the plasma membrane. Once at the surface, they move through lateral brownian diffusion and can reversibly anchor to postsynaptic density proteins or return to endocytic compartments. Aβ oligomers increase endocytosis of AMPARs, diminish dendritic spine density and cause overall failures in excitatory transmission. These effects, among others, are englobed in the term “Aβ oligomers synaptotoxicity” and are a main focus on the study of Alzheimers disease ethiology. On the contrary, Wnt5a - an endogenous Wnt ligand known to activate the non-canonical pathway in hippocampal neurons - generates an increase in excitatory currents and in clusters of PSD95 and protects neurons against Aβ oligomers synaptotoxicity. Given the fact that Wnt5a seems to counteract the distresses caused by Aβ oligomers, we proceeded to study the mechanism through which Wnt5a protects from Aβ oligomers synaptotoxicity. This led us to evaluate the effect of Wnt5a on one of the important factors in glutamatergic transmission, i.e. AMPAR receptor dynamics. By using super-resolution microscopy in live and fixed hippocampal neurons, we found that Wnt5a modulates the dynamic and localization of AMPARs. Specifically, Wnt5a stabilizes AMPARs in synaptic and extrasynaptic sites. This correlates with an increase in co-localization and interaction between GluA2 and PSD95. These effects are exerted only by non-canonical activation of Wnt signaling, through Wnt5a ligand and not by the canonical effects of Wnt7a. Interestingly, pre-incubation of Wnt5a prevents toxicity of Aβ oligomers and maintains basal AMPARs dynamics. Our data suggest that Wnt5a prevents Aβ oligomers effects by promoting their stabilization in synaptic sites. / Los receptores AMPA (AMPARs) son los principales responsables de la respuesta excitatoria rápida en el sistema nervioso central, incluyendo neuronas hipocampales, estudiadas en esta tesis. A diferencia de otros receptores glutamatérgicos, los AMPARs son altamente dinámicos. Dentro de las espinas dendríticas, se pueden mover hacia y desde compartimentos endocíticos y hacia la membrana plasmática. Una vez en la superficie, a través de difusión lateral, se pueden anclar a proteínas de la densidad postsináptica o regresar a compartimentos endocíticos. Por otro lado, los oligómeros Aβ (oAβ) aumentan la endocitosis de AMPARs, disminuyen la densidad de espinas dendríticas y causan una falla generalizada de la transmisión sináptica excitatoria. Estos efectos, entre otros, se engloban en el término “sinaptotoxicidad por oAβ” y es uno de los principales puntos de estudio en la etiología de la enfermedad de Alzheimer. Al contrario, Wnt5a un ligando endógeno conocido por activar la vía no canónica en neuronas hipocampales, genera un aumento en corrientes excitatorias y en los clusters de PSD95 y protege a las neuronas contra la sinaptotoxicidad causada por oAβ. Debido a esto, procedimos a estudiar el mecanismo por el cual Wnt5a protege de la sinaptotoxicidad causada por Aβ. Esto nos llevó a evaluar los efectos de Wnt5a en uno de los principales factores en la transmisión glutamatérgica, la dinámica de los AMPARs. Con el uso de microscopía de super-resolución en neuronas hipocampales vivas, encontramos que Wnt5a modula la dinámica y localización de los AMPARs. Específicamente, Wnt5a estabiliza los AMPARs en espinas y dendritas. Lo cual se correlaciona con un aumento en la co-localización e interacción entre GluA2 y PSD95. Estos efectos son causados únicamente por la activación no-canónica de la vía Wnt, a través del ligando Wnt5a y no por los efectos canónicos de Wnt7a. De manera interesante, la pre-incubación de Wnt5a previene la toxicicidad de los oligómeros Aβ y mantiene la dinámica basal de los AMPARs. Esta data sugiere que Wnt5a promueve la estabilización de AMPARs, previniendo los efectos synaptotóxicos de los oAβ .

Chapter 1: Amphiphilic self-assembled systems as nanocarriers Nanocarriers are the nanometric size molecular assemblies that are used for the transport of small molecules into their non-solvating environments. These systems find major applications as drug delivery systems (DDS) in pharmacological research. These drug delivery systems improves solubility and stability of the drug molecules through encapsulation and also offer additional advantages like target specificity and stimuli responsive release of the drug molecules. Several types of DDS are reported in the literature, which can be prepared by a variety of processing techniques. Of these, molecular self- Chart 1: Developments in the design of amphiphilic nanocarriers assembly has attained considerable attention due to its greater tunability and control in the preparation of nanocarriers. In this chapter we discussed about the amphiphilic nanocarriers which are prepared through self-assembly of amphiphiles through hydrophobic interactions. Several developments in the area of amphiphilic nanocarriers such as di-block polymeric systems, dendritic systems and core-shell architectures are also mentioned. We also highlighted some recent developments in the design of amphiphilic nanocarriers through supramolecular interactions and advantages of such systems. Chapter 2: Bile acid derived dendrons and their application as nanocarriers Host-guest chemistry is well known for dendritic systems. To understand the influence of steric crowding, dendritic effect and importance of number of hydroxyl groups on the bile acid backbone in the host-guest chemistry of bile acid dendrons, we designed and synthesized a new series of C3 symmetric systems and studied the above-mentioned objectives through extraction of polar dyes into nonpolar media. Dye extraction experiments performed using trimeric molecules suggested that only the cholate derivatives (3 and 4) showed considerable extraction of the polar dyes into chloroform; deoxycholate derivatives did not show any extraction, thus emphasizing the importance of the number of hydroxyl groups for dye extraction in these molecular architectures. The effect of steric crowding at the core of these trimeric molecules was shown by efficient extraction of the dyes with the triethylbenzene core (4) compared to the benzene core (3). Greater influence of the aggregates in the case of triethylbenzene core on the extracted dye was also manifested in the Chart 2: Structures of the designed molecules 1-6 value of the induced circular dichroism signal. Surprisingly, a higher analogue in these molecular architectures showed lesser efficiency in dye extraction (on a per bile acid residue basis) compared to the trimers, suggesting a more compact structure for the higher analogue. This was supported by molecular modeling studies. Generality of these systems as nanocarriers for hydrophilic dyes was investigated by screening several other dyes and polar molecules, which are diverse in their structure and functionalities. All these experiments suggested a dependency of the extraction profile on the size of the dye molecule. This was also examined by dynamic light scattering studies, which showed larger size and wider distribution in the size of the aggregates in the case of larger dyes. We also demonstrated selective extraction of a single dye molecule from a blended food color (apple green) using one of the trimer (4) and demonstrated solvent dependent morphological changes in these compounds using electron microscopy. The self-assembly of these amphilic molecules at the air-water interface was studied through Langmuir monolayer studies. Chart 3: Structure of polar guest molecules (Cresol red (7). Erioglaucine (8), Eriochrome black T (9),) phenyl β-D-glucopyranoside (10) and Eosin B (11) Chapter 3: Design and synthesis of bile acid derived surfactants: Study of their aggregation and potential applications Bile acids are facially amphiphilic systems and their amphiphilicity can be improved by attaching polar groups on the bile acid back bone or by synthesizing oligomeric systems which show better self-assembly compared to their monomeric units. To study and improve the amphiphilicity of bile acids, we designed and synthesized a new tripodal surfactant system, with a phosphine oxide based central core to which the bile acids were attached through the C-3 position using click chemistry. Our molecular design also offers added advantage of studying the influence of the stereochemistry at the C-3 position on the aggregation of these molecular architectures. We synthesized trimeric systems with both cholic and deoxycholic acids attached to the central phosphine oxide core with α and β stereochemistry at the C-3 position. Aggregation of these molecules was studied by surface tension measurements, dye extraction studies and NMR. All these compounds showed aggregation at micromolar concentrations. NMR studies suggested changes in the structure of the aggregates at higher temperature and these changes were studied by DLS, which suggested thermodynamically stable monodispersed aggregates for cholic acid derivatives (13 and 15) at higher temperature. These aggregates are stable even after cooling to room temperature and with time. The aggregates of these derivatives were also characterized by atomic force microscopy. Gelation was observed in the case of α derivatives (12 and 13) in phosphate buffer (0.1 M) at pH 7.5 for both deoxy and cholic derivatives, which emphasized the influence of stereochemistry at C-3 position in these architectures. These gels were characterized by rheology experiments. Finally, the possible utility of these micellar systems as model systems to study photophysical processes was demonstrated through lanthanide sensitization experiments in these micellar solutions. Chart 4: Structure of the designed molecules Chapter 4: Synthesis of oligomeric bile acid-taurine conjugates: Study of their aggregation and efficiency in cholesterol solubilization Bile acids are bio-surfactants that are used for the emulsification of fats, vitamins etc. in our body. Bile salts also solubilize the excess cholesterol in our body through mixed micelle formation in the bile and when the bile gets saturated with cholesterol, it leads to cholesterol gallstone formation, which needs to be treated. Ursodeoxycholic acid (UDCA) is used as drug in some cases for the solubilization of (small) cholesterol gallstones, even though the efficiency to solubilize cholesterol is less for UDCA compared to the other bile acids (UDCA is less toxic than the others). So there is a need to develop new cholesterol solubilizing agents. Since oligomeric systems can aggregate better, we designed and synthesized two tetramer taurine conjugates, which differ in the spacer between the bile acid units. Since these conjugates are not soluble in water, their solubility and aggregation was studied in 10% MeOH/Water using pyrene fluorescence experiments. Aggregation studies suggested better aggregation for these molecules compared to their monomeric analogues. These aggregates were also characterized byDLS and electron microscopy. These systems were subsequently studied as nanocarriers for liphophilic dye molecules into aqueous media. Finally, the influence of oligomeric effect in cholesterol solubilization was investigated by cholesterol solubilization studied using these two tetramer taurine compounds and a control, sodium taurocholate. These studies suggested efficient solubilization of cholesterol by oligomers compared to monomeric analogues.(For structural formula pl see the abstract file)

Synucleinopathies are a family of neurodegenerative diseases, with the distinctive pathological feature of Lewy bodies, which include Parkinson’s disease. Lewy bodies are intracellular inclusions filled with α-synuclein, a small neuronal protein with prion-like properties. The main function of α-synuclein is not fully understood, however, it plays a major role in disease progression. Dopamine interactions with α-synuclein have also been implicated in the progression of Parkinson’s disease. Dopamine crosslinks α-synuclein and causes generation of toxic oligomeric species of the protein. Little is known about dopamine-α-synuclein adducts, and one section of the current dissertation focuses on dopamine, levodopa, and α-synuclein interactions. Studies detailed herein demonstrated that lysine residues on α-synuclein have an essential role in the dopamine-induced oligomer formation. Evidence is also presented showing that removal of one of the reactive sites on dopamine by N-acetylcysteine and/or glutathione inhibits dopamine-induced oligomer formation, although the dopamine thiol-conjugates still bind to α-synuclein. In contrast, thiol-conjugates of the dopamine precursor levodopa, significantly increase α-synuclein oligomer formation. The data demonstrate the importance of the scavenging of dopamine and levodopa quinones by N-acetylcysteine and glutathione, and the subsequent changes in the interaction with α-synuclein and its oligomeric states. Environmental factors are key players in the development of synucleinopathies. Although arsenic pesticide exposure has been linked to elevated risk of Parkinson’s disease, there is a paucity of information on arsenic-induced pathological changes, which may be attributed to the onset of neurodegenerative processes. SH-SY5Y cells exposed to environmentally relevant levels of arsenic for 72 hours, develop α-synuclein oligomers and exhibitaugmented expression of stress markers. Thus, there is an increase in autophagy markers and other stress markers, including the accumulation and co-localization of LC3, major autophagy marker, and α-synuclein. Animals transiently exposed to arsenic through drinking water for 2 or 5 weeks, exhibited pathological features resembling synucleinopathies. Although animals were exposed at two-months of age and remained exposure free up to geriatric age (18 months), they still exhibited accumulation of α-synuclein and elevations in autophagy markers. The results demonstrated how even a short period of exposure to a toxicant can have detrimental neurological effects, which may contribute to the development of neurodegenerative disease years after exposure.

Thesis (PhD)--Stellenbosch University, 2005. / ENGLISH ABSTRACT: See fulltext for abstract / AFRIKAANSE OPSOMMING: Sien volteks vir opsomming