Fotoredoxkatalys tillhandahåller möjligheter att utveckla nya hållbara kemiska reaktionsvägar. När fotokatalysatorn bestrålas med synligt ljus möjliggörs elektronöverföring till eller från substratet som i sin tur medför alstring av reaktiva fria radikaler. Kolradikaler, genererade med fotoredox-katalys från alkyloxalataktiverade alkoholer, har framgångsrikt kopplats till sulfinyliminer och möjliggör därigenom syntes av onaturliga α-aminosyror. Reaktionen utförs vid rumstemperatur och kräver endast extern energi i form av synligt ljus för att aktivera den iridium-baserade fotokatalysatorn. Den höga tillgängligheten av alkoholer utgör ett rimligt skäl för att använda dem som startmaterial. I detta projekt har tertiära alkoholer resulterat i framgångsrika reaktioner. / Photoredox catalysis provides opportunities to develop new sustainable chemical reaction pathways through single-electron transfer events and generation of reactive free-radical species. In this thesis carbon radicals, generated with photoredox catalysis from alkyl oxalate-activated alcohols, have successfully been coupled to sulfinyl imines and thereby enabling synthesis of unnatural α-amino acids. The reaction is performed at room temperature and only requires external energy in the form of visible light to activate the iridium-based photocatalyst. The abundance and availability of alcohols presents good reasons to use them as radical precursors. Under the developed reaction conditions, tertiary alcohols proved to be successful radical precursors, giving the desired product in good yield.

Fotoredoxkatalys har nyligen genomgått en renässans inom organisk kemi då metoden har möjliggjort framtagandet utav nya reaktionsvägar med milda reaktionsbetingelser genom att använda sig av synligt ljus. I det här arbetet undersöktes metodens bredd genom att kombinera metoden med väteatomöverföringskatalys för att funktionalisera C–H bindningar i α-position till heteroatomer och på så sätt skapa icke-naturliga α-aminosyror. Resultaten från detta arbete gav upp till 60% utbyte genom att kombinera dessa två katalysmetoder för substrat med Boc som skyddsgrupp, medan tertiära aminer inte krävde en väteatomöverföringskatalysator för kunna funktionaliseras. Den syntetiska metoden utan väteatomöverföringskatalys verkar dock inte vara applicerbara för sekundära aminer, men ser ut att fungera för C–H aktivering i α-position till svavelatomer vilket tyder på denna simplare metod utan väteatomsöverföring bör vara applicerbar för flera typer av substrat än för bara aminer / Photoredox catalysis has recently undergone a renaissance in the field of organic chemistry due the enabling of new reaction pathways under mild reaction conditions using visible light. In this work, the scope of this technology was explored by combining it with hydrogen atom transfer (HAT) to perform C–H functionalization in α-position to heteroatoms for synthesis of unnatural α-amino acids. The results showed that this is a viable method, gaining up to 60% yield using a dual catalytic system for Boc protected amines, while the functionalization of tertiary amines does not require HAT in order to work. Secondary amines proved to be non-applicable using the developed synthetic route without HAT catalyst while C–H activation in α-position to sulfur atoms gave similar response as tertiary amines – indicating that C–H activation without HAT should be applicable to a wider substrate scope than only using amines.

This study analyzes the reactivity and selectivity of Friedel-Crafts alkylations using benzylic alcohols and phenols in the presence of a Lewis acid, to synthesize methoxylated bisphenols as a benign alternative to BPA. The degree of methoxylation on the electrophile appears to affect the yield of the reaction while the degree of methoxylation on the nucleophile appears to affect the selectivity. A more methoxylated electrophile results in a lower yield whereas a more methoxylated nucleophile results in a change in ratio between the bisphenol isomers and/or causes other isomers to form. Neither the yield nor the selectivity appears to be affected significantly by the temperature.

The product R1-MR2E is an ester formed from an esterification of a carboxylic acid and an alcohol at Cambrex Karlskoga AB. The production of the intermediate R1-MR2E is a large-scale production and there are two main objectives and two sub-objectives that this project aims to study of the manufacturing.The manufacturing of R1-MR2E experience big variations in the product yield which is affecting theproductions stability and economic aspects of it. Thus, one of the main objectives in this project was to use experimental design to find significant factors that causes yield variations. The results from this study showed five significant factors that affect the yield positively or negatively by resulting in higher or lower product weight. The factors found are the amount of charged toluene solution containing the by-product R1-DR2E from the recycling system, the amount of charged carboxylic acid, the reaction time, the amount of added Na2SO3 in the neutralisation step and the regulated pH value after the crystallisation step. The other main objective is to optimize the purification sub-section using activated carbon (AC). There are two sub-objectives for this part of the study where the first sub-objective is to evaluate how much activated carbon that is needed to remove the impurities and colouration in the product. The second sub-objective is to investigate if an activated carbon filter could be used as a substitute for the commonly used loose powder activated carbon. To answer this objective a laboratory method was used, where the large-scale purification- and crystallisation step as well as after treatment were scaled down to lab scaleand then experiments were conducted to determine the effects of different amounts of activated carbon, using no carbon, and utilizing another type of activated carbon known as activated carbon filters. The results were then analysed for colour and purity by a visual observation method and High-Performance Liquid Chromatography (HPLC) method. The conclusion from this study is that only 25% of the amount of activated carbon used today is needed to remove the colouration in the product. The activated carbon did not completely remove the impurities in the product. The other conclusion was that the idea that the activated carbon removed the small impurities was wrong, and the levels of the impurities are already small enough in the large-scale production that the purification step is not needed to reach approved levels of these impurities. The activated carbon filter also works to remove the colouration with only one filtration but does not work well on removing the impurities in the product. / Produkten R1-MR2E är en ester som formas med en förestring av en karboxylsyra och en alkohol på Cambrex Karlskoga AB. Produktionen av intermediet R1-MR2E är en storskalig produktion och det finns två huvudmål och två delmål som studeras i studien. Produktionen av R1-MR2E upplever stora variationer i produktsutbytet vilket påverkar produktionensstabilitet och ekonomiska aspekter. Ett av målen med detta projekt är därmed att använda experimentell design för att hitta signifikanta faktorer som orsakar utbytesvariationer. Resultatet från den här studien visar på fem faktorer som påverkar utbytet positivt eller negativt genom att bidra till högre eller lägre utpackad vikt. Faktorerna som hittades är mängden av den satsade R1-DR2E från återvinningssystemet, mängden av den satsade karboxylsyran, reaktionstiden, mängden av den adderade Na2SO3 under neutralisation steget och de reglerade pH efter kristallisations steget. Det andra målet är att optimera ett av produktionens delsteg, rening med aktivt kol (AC). Det finns två delmål för den delen av studien, de två delmålen är att ta reda på hur mycket aktivt kol som behövs för att ta bort föroreningar och förbättra färgen i produkten samt undersöka om aktivt kolfilter kan användas som ett substitut för det vanligen använda lösa aktiva kolpulver. För att genomföra det här målet så användes en laborativ metod, där det storskaliga renings- och kristallisationssteget samt efterbehandling skalades ner till laborativ skala. Sedan genomomfördes experiment för att bestämma effekten av olika mängder aktivt kol, inget aktivt kol, och använda en annan typ av aktivt kol i formen av ett aktivtkolfilter. Resultaten från det laborativa arbetet analyserades sedan med en visuell metod samt högpresterande vätskekromatografisk (HPLC) metod. Slutsatsen från studien är att bara en 25% av den mängd aktivt kol som används i dagens läge behövs för att ta bort färgen i produkten. Det aktiva kolet tog dock inte bort föroreningarna i produkten speciellt bra. Det betyder att idén om att det aktiva kolet tar bort föroreningar är fel och att nivåerna av föroreningarna redan är tillräckligt låga i den storskaligaproduktionen för att bli godkända i koncentration utan reningssteget. AC filter fungerar också för att ta bort färgen med endast en filtrering men fungerar inte att använda för att ta bort föroreningarna i produkten.

Carbon fiber (CF) is predominantly produced from fossil-based sources and is therefore an area of interest for further development towards a more sustainable society. The purpose of this thesis work was to investigate the possibility of producing precursor fibers (PFs) for CF production from a blend of renewable cellulose andlignin. Cellulose, which is used to some extent for CF production, was chosen, while the possibility of adding lignin was investigated in hope of increasing the gravimetric yield of the CF production. Blends of softwood kraft cellulose pulp (SKP) and softwood kraft lignin (SKL) were dissolved in an alkaline (NaOH) solvent system at different cellulose/lignin ratios. A total of eight dopes were prepared (SKP/SKL ratios of 100/0–60/40 wt./wt.) with total dope concentrations ranging from 4.5 wt.% to 9.2 wt.%. The addition of SKL resulted in dark colored dopes with viscosities of which mainly appeared to depend on the SKP concentration. The dopes were wet spun, resulting in continuously spun PFs. The PFs showed on an increasing pyrolysis yield with increased SKL content but decreasing mechanical properties. However, process optimization was not included in the work, subsequently leading to the assumption that greater values on mechanical properties can be achieved. A pure SKP PF and a SKP-SKL (70/30 wt./wt.) PF were successfully thermally converted into CFs by carbonization at 1000 °C. The PF containing SKL had a total gravimetric yield more than twice as high as the pure SKP PF, 28 wt.% and 12 wt.%, respectively. Thereby, the addition of SKL seems to have a positive impact on the CF yield when utilizing a NaOH(aq) solvent system. This thesis work has become a base for the future work towards the development of CFs from wet spun cellulose-lignin PFs in the NaOH(aq) solvent system.

There are two kinds of protein aggregates associated with Alzheimer’s disease: amyloid-beta and tau aggregates. Protein ligands are molecules with the ability to bind to these pathologicalprotein accumulations, and if the ligands are fluorescent, they can be used to detect the aggregates they’re bound to. The ligands can be selective and only bind to one kind of protein aggregate, or they can be general and bind to both kinds. PI-2620 is a ligand selective for tau aggregates, and in this thesis, three analogues of PI-2620 were synthesized and determined to be functional fluorescent protein ligands. Two of them, designated A1 and B1, were selective for amyloid-beta aggregates, while the third ligand, A2, obtained by ester-hydrolysis of A1, would bind to both tau and amyloid-beta aggregates. This finding suggests that introducing a charge to a ligand lowers its selectivity, since the staining experiments were carried out in a buffered solution at pH 7.4, where ligand A2 might be partially charged.

Arvika Fjärrvärme AB is manufacturing and distributing district heating to around 300 customers in Arvika. Heat production consists of a BFB boiler fed with GROT fuel (branches and peaks) and delivers a maximum power of 30 MW. In order to operate the plant, an average of 60 m3 of water per day is consumed from the urban water network. The water consumption is divided between water treatment, sooting and process cooling. In the processes, sulfur is dosed to obtain a more complete combustion of the hazardous flue gases that can occur. This is a result of previous thesis made for Arvika fjärrvärme. GROT is a fuel that contains high levels of moisture, which means that a high amount of condensate is formed during combustion, averaging 100 m3 per day. At present, condensate is sufficient to meet the condensate limit values ​​to be flushed into the drain. This is achieved by sand filtration and pH neutralization. Today, Arvika heat production is equipped with a purification stage for the feed water consisting of a softening filter and membrane filtration. This creates good conditions for cleaning the condensate and recirculating it in the process. Questions for this study are which hazardous substances the condensate can contain and how the condensate composition affected due to sulfur dosage. In addition, Arvika fjärrvärme wants to find out whether the purified condensate can replace the use of the urban water and, finally, if the condensate can be purified and used as feed water in the process. The execution of the work was based on a full-scale attempt in two operating cases of 9 and 18 MW. The tank collecting all condensate after purification in the sand filter and pH neutralization was coupled to the feed water purification stage. Thus, the condensate was pumped and purified in the softening filter and membrane filter. Assay substrates were collected before and after purification of the condensate. In addition to the topics that Arvika investigates, high levels of alkalinity were found in the condensate. The sulfur dosage that Arvika technology works with can be the cause of the high concentrations of sulphate. However, it appears that both the sulfate and alkalinity were purified in the membrane filter. The amount of condensate formed cannot completely replace the entire water requirement, but definitely large parts. The condensate can be used as feed water based on the retention rate for all substances. However, it appears that two substances, chloride and sulphate can create problems for the membrane filter. To investigate this, the condensate should be tested over a longer period of time to see the affect the chloride as well as the sulphate in the long run. / Arvika Fjärrvärme AB bedriver produktion och distribution av fjärrvärme till ca 300 kunder runt om i Arvika. Värmeproduktionen består av en BFB-panna som matas med bränslet GROT (grenar och toppar) och levererar en maxeffekt på 30 MW. För att driva anläggningen förbrukas i snitt 60 m3 vatten per dag från stadsvattennätet för spädvattenförberedning, sotning och processkylning. I denna typ av värmeproduktion som Arvika Fjärrvärme bedriver doseras svavel. Detta är ett resultat av ett tidigare examensarbete som visade att vid en dosering av svavel bildas det färre farliga rökgaser som kan uppstå vid förbränningen. GROT är ett bränsle som innehåller höga halter fukt vilket innebär att höga mängder kondensat bildas vid förbränningen, i snitt 100 m3 per dag. I dagsläget renas kondensatet tillräckligt för att möta de gränsvärden för att kondensatet ska få spolas ner i avloppet. Detta uppnås genom en sandfiltrering och pH-neutralisering. Idag är Arvika Fjärrvärme utrustade med ett reningssteg för spädvattnet bestående av ett avhärdningsfilter samt membranfilter. Detta skapar goda förutsättningar för att rena kondensatet och återcirkulera det i processen. Funderingar som uppstår är vilka farliga ämnen som kondensatet kan innehålla samt hur kondensatsammansättningen påverkas av svaveldoseringen. Dessutom ställer sig värmeverket frågan om det renade kondensatet kan ersätta förbrukningen av stadsvattnet och slutligen om kondensatet kan renas och användas som spädvatten i processen. Genomförandet av arbetet baserades på ett fullskaligt försök under två driftfall på 9 samt 18 MW. Tanken som samlar upp allt kondensat efter rening i sandfiltret och pH neutraliseringen kopplades på i steget för spädvattenrening. På så sätt pumpades kondensatet igenom och renades i avhärdningsfiltret samt membranfiltret. Analysunderlag samlades in före samt efter rening av kondensatet. Förutom de ämnen som Arvika fjärrvärme undersöker förkommer höga halter alkalinitet i kondensatet som bidrar till bildning av pannsten. Svaveldoseringen som Arvika fjärrvärme jobbar med kan vara orsaken till de höga koncentrationerna av sulfat. Det visar sig dock att både sulfatet och alkaliniteten renas bort i membranfiltret. Mängden kondensat som bildas kan inte helt ersätta hela vattenbehovet men definitivt stora delar. Kondensatet kan användas som spädvatten om retentionsgraden för ämnena anses hög nog. Det visar sig dock att två ämnen, klorid och sulfat, kan skapa problem för membranfiltret. För att undersöka detta bör kondensatet testas under en längre tidsperiod för att se vilken påverkan klorid och sulfat har i längden.

<p>The first part of the work describes a procedure of oligonucleotide purification using a reversed-phase cartridge. The developed method employs a very efficient yet mild oligonucleotide detritylation on the cartridge support allowing fast purification of oligonucleotides regardless of their 5´-modification. Thiol- and amino-modified oligonuc-leotides were detritylated and purified with the same high efficiency as non-modified oligonucleotides. The method enables fast, parallel and automated purification of many oligonucleotide probes that was not possible before. In combination with the method of removal of tritylated failure fragments oligonucleotides were produced with purity superior to that of oligonucleotides purified using RP HPLC.</p><p>In the second part of the present study a method of solid-phase RNA synthesis using 2´-tert-butyldithiomethyl (2´-O-DTM) is discussed. The stability of the DTM group during oligonucleotide assembly and deprotection in ammonia, together with its ability for rapid deprotection under mild conditions, allowed the synthesis of RNA with the quality similar to that of synthetic DNA oligonucleotides. The advantage of the 2´-O-DTM group is that it is completely orthogonal to all protecting groups used for the traditional solid-phase DNA synthesis. Therefore, the synthesis can be performed using a standard DNA synthesis procedure – no changes are needed for the product assembly. RNA oligonucleotides synthesized with retained 5´-terminal trityl group can be subjected to a cartridge-based purification using the procedure described in the first part of the study. The phosphoramidite synthesis was optimized for a large scale preparation and gives versatility for introduction of other alkyldithiomethyl groups according to the preference to their certain properties.</p><p>The third part of the thesis describes the synthesis of a dithiomethyl linker and its utility for reversible conjugation of oligonucleotides. A dithiomethyl group, cleavable under mild conditions, was introduced onto 3´-OH of tritylated nucleosides via 3´-O-methylthiomethyl derivatives. The influence of different alkyl substituents on the disulfide bond stability was investigated, and stable analogues were employed in oligosyntheses. Two applications were developed using the present linker: 1) purification of oligonucleotides linked to the solid support; and 2) cartridge-based purification of tritylated oligonucleotides having an additional hydrophobic group on their 3´- terminus.</p>

<p>This thesis concerns the study of reaction mechanisms by means of kinetic isotope effects (KIEs). Studies of the nucleophilic bimolecular substitution (S_N2) reaction had the dual purpose of improving our fundamental understanding of molecular reactivity and assessing the ability of kinetic isotope effects to serve as mechanistic tools. The transition state of the S_N2 reaction between a cyanide ion and ethyl chloride in tetrahydrofuran was found to be reactant like and only slightly tighter than has been found previously for the same reaction in dimethyl sulphoxide. One conclusion was that the transition-state structure in this reaction was predicted fairly well by the theoretical calculations, even without solvent modelling. The S_N2 reactions between cyanide ions and <i>para</i>-substituted benzyl chlorides were found to have reactant-like transition states, of which the C_α-Cl bond was most influenced by the <i>para</i>-substitution. Theoretical calculations indicated that the chlorine KIEs could be used as probes of the substituent effect on the C_α-Cl bond if bond fission was not too advanced in the transition state. Furthermore, the nucleophile carbon ¹¹C/¹⁴C KIEs were determined for the reactions between cyanide ions and various ethyl substrates in dimethyl sulphoxide.</p><p>Precision conductometry was employed to estimate the aggregation status of tetrabutylammonium cyanide in tetrahydrofuran and in dimethyl sulphoxide, which is of interest as tetrabutylammonium cyanide is frequently used as the nucleophilic reagent in mechanistic investigations and synthetic reactions. The tendency for ion-pair formation was found to be very slight, significant, and very strong in dimethyl sulphoxide, water, and tetrahydrofuran, respectively. </p><p>The nitrogen kinetic isotope effect on monoamine oxidase B catalysed deamination of benzylamine was determined in an attempt to obtain conclusive evidence regarding the mechanism of the oxidation. Monoamine oxidase is an important drug target in connection with the treatment of, for example, depression and Parkinson’s disease, and knowledge on how the enzyme effects catalysis would facilitate the design of highly selective and efficient inhibitors.</p>

This thesis is concerned with synthesis, structure and biochemical analysis of chemically modified oligonucleotides with potential therapeutic applications. The three types of chemical modifications described here are: (a) A North-East locked 1',2'-azetidine nucleoside (b) A North locked 2',4'-cyanomethylene bridged nucleoside and (c) A 2',4'-aza-ENA-T nucleoside. The synthesis of the 1',2'-azetidine fused nucleosides was described using two different approaches. A highly strained 2',4'-cyanomethylene locked nucleoside was synthesized but could not be converted to the phosphoramidite derivative due to instability during derivatization. The key cyclization step in the aza-ENA-T nucleoside synthesis gave rise to two separable diastereomers due to chirality at the exocyclic nitrogen. Conversion of diastereomer 55 to 56 occurred with a large free energy of activation (ΔG‡ = 23.4 kcal mol-1 at 298 K in pyridine-d5). Of the two isomers the equatorial NH product was more stable than the axial one due to reduced 1,3 diaxial interactions. As a result, all NH axial product was converted to the equatorial isomer during subsequent steps in the synthesis. NMR and ab initio experiments confirmed the North-East structure of the 1',2'-azetidine locked nucleoside and North conformation of aza-ENA-T locked nucleosides with a chair conformation of the piperidine ring. The amino modified nucleosides were incorporated into different positions of a 15mer oligonucleotide. The azetidine modified AONs did not form stable duplexes with complementary RNA (ΔTm ~-1 to -4 °C), but they performed better than previously synthesized isosequential 1',2'-oxetane modified oligonucleotides. The 2',4'-aza-ENA-T modified oligonucleotide, on the other hand, showed excellent target affinity with complementary RNA (ΔTm ~+4 °C). The azetidine and aza-ENA-T modified oligonucleotides showed significant stability in the presence of human serum and snake venom phosphodiesterase (3'-exonuclease) as compared to the unmodified native sequence. The singly modified 15mer oligonucleotides were also subjected to RNase H promoted digestion in order to evaluate their potential as effective antisense agents. The effective enzyme activity (kcat/Km) was found to be lower in the modified AONs due to reduced enzyme-substrate binding. However, the catalytic activity of RNase H with these modified-AON:RNA duplexes were higher than observed with the native duplex.