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Eco-evolutionary dynamics integrates the reciprocal interactions betweenecology and evolution. These two branches of biology traditionally assumethe other as static for simplicity. However, increasing evidence shows thatthis simplification may not always hold because ecology and evolution canoperate in similar timescales. This thesis theoretically explores how thereciprocal interactions may influence ecological and evolutionary outcomesin four different eco-evolutionary contexts.Many species of non-social animals live in groups. Aggregating ingroups often has both benefits and costs that depend on group size. Thanksto the benefits of aggregation, population growth likely depends positivelyon population density when it is small. This phenomenon, the Allee effect,has been hypothesized to explain the evolution of aggregation behavior. Ifind that the Allee effect alone does not lead to the evolution whenpopulation dynamics is explicitly accounted for. Some other mechanisms,such as frequent needs for colonizing new patches or anti-aggregation,should be invoked to explain why aggregation behavior could evolve.Phenotypic plasticity is the ability of a genotype to express distinctphenotypes when exposed to different environments. Although it is oftenshown to be adaptive and not costly, highly plastic organisms are rare. Paststudies demonstrated some potential reasons. I test another possibility; costsmay arise from sexual selection because highly plastic individuals may beless preferred as a mate. I show that, even in the absence of the direct cost ofplasticity, the level of plasticity remained low at intermediate strengths ofassortative mating. This pattern is robust across wide ranges of parametervalues.Ecological speciation occurs when ecologically divergent selectionbetween environments causes reproductive isolation between divergingsubpopulations. Several verbal models of ecological speciation emphasizethe roles of phenotypic plasticity in promoting speciation. The complexprocesses involved in speciation, however, are difficult to be evaluated byverbal accounts. I quantitatively test the proposed idea in a mechanisticmodel of ecological speciation in the presence and absence of plasticity. Ifind conditions under which plasticity can promote or hinder ecologicalspeciation. Plasticity facilitates speciation by producing a gap in thedistributions of expressed phenotypes, which serves as a barrier to gene flowin an assortatively mating population.Ecosystem ecology and evolutionary biology are the least integratedfields in ecology and evolution. Natural selection operating at the individuallevels on traits governing ecosystem functions may affect ecosystemproperties, which may feedback to individuals. I reviewed this idea anddemonstrate the feedback loop by using a simple consumer-resource model.

In Nova Scotia subtidal habitats, the invasive bryozoan Membranipora membranacea interacts with native bryozoan Electra pilosa on kelps, which offer high space availability but are highly dynamic, and on non-kelp algae, which provide low space but high stability. Settlers and colony cover of M. membranacea at various stages critical to its population dynamics, as well as relative abundance and encounter outcomes of M. membranacea and E. pilosa, were quantified on these substrates. I also examined the effects of various factors on growth rates of E. pilosa. For M. membranacea populations, the roles of kelp and non-kelp substrates varied intra- and inter-annually, as well as spatially. Membranipora membranacea was relatively more abundant on kelps than on Fucus, likely due to large colony size, faster growth, and strong overgrowth abilities. While kelps provide spatial resources for seasonal peaks in abundance of M. membranacea, non-kelp refuges can preserve local populations in time.

To understand the processes affecting the abundance of wild populations is a fundamental goal of ecology and a prerequisite for the management of living resources. Variable abundance, however, makes the investigation of ecological processes challenging. Recruitment, the process whereby new individuals enter a given stage of a ?sh population, is a highly variable entity. I have confronted this issue by developing methodologies speci?cally designed to account for, and ecologically interpret, patterns of variability in recruitment. To provide the necessary context, Chapter 2 begins with a review of the history of recruitment science. I focus on the major achievements as well as present limitations, particularly regarding environmental drivers. Approaches that include explicit environmental information are contrasted with time-varying parameter techniques. In Chapter 3, I ask what patterns of variability in pre-recruit survival can tell us about the strength of density-dependent mortality. I provide methods to investigate the presence of density-dependent mortality where this has previously been hindered by highly variable data. Stochastic density-independent variability is found to be attenuated via density dependence. Sources of recruitment variability are further partitioned in Chapter 4. Using time-varying parameter techniques, signi?cant temporal variation in the annual reproductive rate is found to have occurred in many Atlantic cod populations. Multivariate state space models suggest that populations in close proximity typically have a shared response to environmental change whereas marked differences occur across latitude. Hypotheses that could result in consistent changes in productivity of cod populations are tested in Chapter 5. I focus on a meta-analytical investigation of potential interactions between Atlantic cod and small pelagic species, testing aspects of the cultivation-depensation hypothesis. The ?ndings suggest that predation or competition by herring and mackerel on egg and larval cod could delay recovery of depleted cod populations. Chapter 6 concludes with a critical re?ection on: the suitability of the theories employed, the underlying assumptions of the empirical approaches, and the quality of the data used in my thesis. Application of ecological insights to ?sheries management is critically evaluated. I then propose future work on recruitment processes based on methods presented herein.

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During the past two decades, panicle-feeding Hemiptera have become pests of sorghum in West and Central Africa, and particularly in Mali, where this is a staple food crop. Of the more than 100 sorghum insect pests reported in Africa, 42 species were found to be panicle-feeding pests. Prior to this study, no research had been done on the paniclefeeding Hemiptera in South Africa. The objectives of the study were to determine the abundance and diversity of panicle-feeding Hemiptera on sorghum. A check list was compiled and the temporal distribution of different Hemiptera species determined during the different panicle stages of development. In addition, the effect of insecticide application on Hemiptera numbers was evaluated and the correlation between grain mould severity and Hemiptera feeding damage was investigated. To determine the abundance and diversity of Hemiptera on sorghum panicles, surveys were conducted between November 2004 and June 2006 at 26 sites in four provinces of South Africa. Two methods of collection were used viz. the plastic bag and D-Vac methods. The total number of the adults and nymphs collected during this study was 23 798. Forty-three different herbivorous Hemiptera species were collected. The most abundant family was the Miridae (41 %), followed by the Lygaeidae (17 %). Eurystylus spp., Calidea dregii, Campylomma sp., Creontiades pallidus, Nysius natalensis and Nezara viridula were the most abundant species and also occurred widely in the sorghum production area. Infestation levels of these species were low compared to that in other parts of Africa and it cannot be concluded that they have pest status in South Africa. There was no clear distinction between the stages during which panicles were infested by different species. The general tendency was that nearly all species were present from the flowering stage onwards and that numbers declined when grain hardened. In general, Campylomma sp. and C. pallidus numbers peaked during the flowering stage and Eurystylus spp. and N. natalensis during the milk stage. Hemiptera feeding damage resulted in an increase in incidence of seeds with discoloured germ, therefore contributing significantly to reduction in grain quality. / Thesis (M. Environmental Science (Plant Protection))--North-West University, Potchefstroom Campus, 2007.

Fluctuations, or "noise", can play a key role in determining the behaviour of living systems. The molecular-level fluctuations that occur in genetic networks are of particular importance. Here, noisy gene expression can result in genetically identical cells displaying significant variation in phenotype, even in identical environments. This variation can act as a basis for natural selection and provide a fitness benefit to cell populations under stress. This thesis focuses on the development of new conceptual knowledge about how gene expression noise and gene network topology influence drug resistance, as well as new simulation techniques to better understand cell population dynamics. Network topology may at first seem disconnected from expression noise, but genes in a network regulate each other through their expression products. The topology of a genetic network can thus amplify or attenuate noisy inputs from the environment and influence the expression characteristics of genes serving as outputs to the network. The main body of the thesis consists of five chapters: 1. A published review article on the physical basis of cellular individuality. 2. A published article presenting a novel method for simulating the dynamics of cell populations. 3. A chapter on modeling and simulating replicative aging and competition using an object-oriented framework. 4. A published research article establishing that noise in gene expression can facilitate adaptation and drug resistance independent of mutation. 5. An article submitted for publication demonstrating that gene network topology can affect the development of drug resistance. These chapters are preceded by a comprehensive introduction that covers essential concepts and theories relevant to the work presented.

During the past two decades, panicle-feeding Hemiptera have become pests of sorghum in West and Central Africa, and particularly in Mali, where this is a staple food crop. Of the more than 100 sorghum insect pests reported in Africa, 42 species were found to be panicle-feeding pests. Prior to this study, no research had been done on the paniclefeeding Hemiptera in South Africa. The objectives of the study were to determine the abundance and diversity of panicle-feeding Hemiptera on sorghum. A check list was compiled and the temporal distribution of different Hemiptera species determined during the different panicle stages of development. In addition, the effect of insecticide application on Hemiptera numbers was evaluated and the correlation between grain mould severity and Hemiptera feeding damage was investigated. To determine the abundance and diversity of Hemiptera on sorghum panicles, surveys were conducted between November 2004 and June 2006 at 26 sites in four provinces of South Africa. Two methods of collection were used viz. the plastic bag and D-Vac methods. The total number of the adults and nymphs collected during this study was 23 798. Forty-three different herbivorous Hemiptera species were collected. The most abundant family was the Miridae (41 %), followed by the Lygaeidae (17 %). Eurystylus spp., Calidea dregii, Campylomma sp., Creontiades pallidus, Nysius natalensis and Nezara viridula were the most abundant species and also occurred widely in the sorghum production area. Infestation levels of these species were low compared to that in other parts of Africa and it cannot be concluded that they have pest status in South Africa. There was no clear distinction between the stages during which panicles were infested by different species. The general tendency was that nearly all species were present from the flowering stage onwards and that numbers declined when grain hardened. In general, Campylomma sp. and C. pallidus numbers peaked during the flowering stage and Eurystylus spp. and N. natalensis during the milk stage. Hemiptera feeding damage resulted in an increase in incidence of seeds with discoloured germ, therefore contributing significantly to reduction in grain quality. / Thesis (M. Environmental Science (Plant Protection))--North-West University, Potchefstroom Campus, 2007.

Climate change is currently a central problem in ecology, with far-reaching effects on species that may be diffcult to quantify. Ectothermic species which rely on environmental cues to complete successive stages of their life history are especially sensitive to temperature changes and so are good indicators of the impacts of climate change on ecosystems. Based on data collected in growth experiments for the alpine butterfly Parnassius smintheus (Rocky Mountain Apollo), a novel mathematical model is presented to study developmental rate in larval insects. The movement of an individual through larval instars is treated as a discrete-time four-outcome Bernoulli process, where class transition and death are assigned temperature-dependent probabilities. Transition and mortality probabilities are estimated using maximum likelihood estimation techniques. This adult emergence model is then integrated into a reproductive success model, and multi-year implications of climate change on the population dynamics of P. smintheus are explored. / Applied Mathematics

The invasion of natural environments by alien species is a significant threat to the ecological integrity of these systems. Senna obtusifolia is an aggressive invasive weed recently introduced to Australia that is having significant impacts on grassland ecosystems on the Cape York Peninsula. Currently the species is inadequately managed and so range expansion continues. The invasion potential of S. obtusifolia in Australia remains unknown, as does much about its behaviour and management in natural systems. This project undertakes extensive mapping and modelling of the current and future distributions and the invasion dynamics of S. obtusifolia in Australia to facilitate early detection of outbreak populations and the development of appropriate management strategies. The mapping and modelling of S. obtusifolia was conducted at three different scales: continental, landscape and local (population). To address these spatial scales, eco-climatic modelling, remote sensing analysis, field experimentation and creation of a model of seed fate was undertaken. Using the climatic preferences of S. obtusifolia displayed internationally, an eco-climatic model (using CLIMEX software) ascertained that S. obtusifolia has a very large invasive potential in Australia. The predicted geographic distribution comprised the entire eastern and northern Australian coastlines, with spread further inland being largely restricted by a lack of moisture. The regional distribution of S. obtusifolia was not successfully delineated using remote sensing technology. Despite possessing favourable traits for detection by remote sensors, poor data quality and inappropriate image scales prevented the weed from being distinguished from other vegetation by multi-spectral satellite imagery and aerial photography. However, the results indicated that refining the data and the techniques used, single S. obtusifolia populations may be detectable in the future. Investigation of the invasion dynamics of S. obtusifolia at the local scale involved multiple field surveys and manipulative experiments during 2002-2005. Field work indicated that little variation in population characteristics (e.g. stem density, soil seed reserve, seed production) existed within populations, but there was variability across populations and between years: the variation between years was very significant. The vegetation type adjacent to the weed population did not affect population attributes; however less competitive, more open and disturbed environments may better facilitate the invasion. The compartment model of seed fate reflecting S. obtusifolia population dynamics demonstrated that change in annual rainfall was unlikely to explain the variation evident between populations and years. Instead, the rate at which dormancy is broken in seeds and the intensity and regularity of fire provided a better explanation of the weed's population dynamics. Early detection of invaders and the prediction of likely sites of invasion provide the most effective means of preventing future invasions. How best to achieve these goals still remains largely unknown. The process undertaken in this study was a relatively quick and reliable method for assessing the seriousness of S. obtusifolia, predicting future outbreaks and for providing clues to long term management. The appropriate use of fire, maintaining high interspecific competition and shade, as well reducing the rate at which dormancy is broken in seeds are all possible methods of managing S. obtusifolia.