Rodent commensal species produce great damage in agriculture and urban areas. As invasive species they can endanger local species and are carriers and vectors of several important zoonoses. Control methods rely mainly on the use of warfarins, which can be inadvertently be taken up by untargeted species. Warfarins have also lost their efficacy in rodents due to the development of genetic resistance. In addition, these methods are considered inhumane as they cause a slow and painful death due to haemorrhages. Olfaction is a main source for environmental risk assessment by rodents, and it can be used to modify their use of space. My aim in this thesis was to identify behavioural reactions of the house mouse (Mus musculus), using laboratory strains as models of wild animals, to ecologically meaningful chemical messages, including predator and plant chemical olfactory cues. My results showed that mice avoided complex ferret olfactory cues and ethanol which is a ubiquitous chemical related to fruit rotting and ripening. The feline protein Fel d 1, which belongs to the secretoglobin family and is a major cat allergen in humans, did not elicit significant avoidance or alter foraging behaviour in mice. However, Trimethylthiazoline purified from fox faeces, elicited clear avoidance behaviour and stress responses. I carried out a bibliographic review to evaluate and discuss rodent pest control methods from an ethical standpoint. This literature showed that many of the current methods of pest control are considered inhumane, and do not tally with current society concerns and welfare standards in other domains such as farms or laboratory animals. These results raise new research questions to identify ferret and plant chemical compounds that can induce rodent avoidance, and to carry out next stage of research with wild animals both under laboratory and field conditions.

Driving into Yellowstone National Park for the first time is a moving experience. Gazing over the sweeping landscapes, seeing a geyser erupt 80 feet into the air, and having your first ‘wildlife encounter’, whether that be a 2 ton bull bison aggressively wallowing on his dirt mound, snorting and kicking up dust, or watching a pack of 6 wolves move through a valley off in the distance, pausing to howl in search of their companions. Yellowstone staff wishes to manage our park in a way that preserves these remarkable experiences. In order to effectively manage this dynamic ecosystem, it is critical to thoroughly understand how different animal and plant species interact with each other and their environment. Wolves were reintroduced to Yellowstone in 1995-1997 and park researchers and managers are still trying to understand how their presence impacts the ecosystem. In Yellowstone, wolves primarily prey on elk; however, predation on bison has started to increase in recent years. We still know little about how wolves hunt bison and what impacts wolves have had on how bison use their environment. The objective of this study was to better understand the behavioral and ecological interactions of wolves and bison, the most dangerous prey for wolves in North America. Since reintroduction, researchers have collected data on how wolves hunt both elk and bison. I used these data to understand 1) the conditions that allow wolves to capture their most dangerous prey, bison, 2) whether wolves have started preying on bison more often as the bison population increased, and 3) whether wolf reintroduction has limited bison use of Yellowstone’s most extreme high-elevation winter range. Finally, I collaborated with ecologists in Scandinavia to determine how wolf predation was affected by a competitor, the brown bear. My study adds to the current body of work addressing the effects of wolf reintroduction in Yellowstone. This research is unique because it focuses on wolf bison interactions, about which little is known in this system. This research also sheds light on the behavioral relationships at play in a special type of predator-prey interaction: predators that hunt dangerous prey

Benthic invertebrates play important roles as feeding resources for many organisms in different food webs. Shifts in predation of these organisms can generate cascading effects and potentially lead to the disappearance of one or more species from a site. Cascading effects can bring impacts to organisms who aren’t even directly involved, why studies in this field are important for understanding sudden changes in ecosystems. I examined the predation from fish and waterfowl on benthic invertebrates in the shallow and eutrophic Lake Tåkern in the plains of Östergötland County, southern Sweden. The study was experimental and used exclosures (three types, eight replicates) in the shape of 130-liter cages to examine the composition of invertebrates. It was conducted during early spring, a relatively unexamined period for this kind of study. I found no significant differences in the control treatment compared to any of the other treatments regarding biodiversity. The invertebrate fauna was dominated by a small number of species, with a relatively patchy spread throughout the sediment area. Furthermore, the results indicate that the fish hadn’t had the time to properly activate their predatory habits due to prolonged winter temperatures. The waterfowl were considered too absent during the test period to affect the invertebrate community. Future studies in this area are recommended to work with a greater sampling area, to reduce the influence of extreme values.

Ecosystems across the globe are facing a range of anthropogenically-driven changes, including biotic invasions, urbanisation and land-use alterations, which can affect ecosystem structure and stability. To manage both native species decline and invasive species spread it is imperative that we can accurately predict how current global environmental change will affect biotic communities. I examined effects of different land uses at both landscape- and habitat-scales on native (Culex pervigilans) and exotic (Aedes notoscriptus) mosquito distributions in lentic (standing water) freshwater habitats. Because of the importance of land use on habitat characteristics, I expected different land uses would contain different biotic communities, and that mosquitoes would more likely be present in simple communities with fewer predators. Moreover, because habitat disturbance and modification can significantly influence community structure, I expected less diverse pond communities in habitats within highly modified urban and pasture land uses would also be more likely to contain mosquitoes. I found land use affects mosquito presence, and was likely strongly linked with land-use effects on predator presence and taxon richness. Predators were more common in habitats within native forest and tussock grassland, and mosquitoes were almost entirely restricted to urban and pasture habitats. Moreover, local habitat characteristics had a strong influence on both mosquito and predator presence, with deeper and more open habitats supporting greater predator abundance, thereby excluding mosquito larvae. To further investigate the global of climate change on predator-prey interactions involving Ae. notoscriptus and Cx. pervigilans, I conducted two experiments. Firstly, I measured effects of habitat warming and short- and long-term habitat drying on interactions between the two mosquito species and three predatory invertebrates, Anisops wakefieldi backswimmers, Austrolestes colensonis damselflies, and Procordulia smithii dragonflies, which represented predators characteristic of different habitat drying regimes. A second experiment further tested interactions between A. wakefieldi and the two mosquito species in a wider range of temperatures. There was little evidence that short-term habitat drying affected interaction strengths of any of the predator-prey combinations, but strong evidence for the importance of temperature-mediated predation rates which depended on both predator and prey identities. Here, predators characteristic of more temporary hydroperiods showed temperature-mediated predation responses on the two mosquito species: increasing temperature resulted in greater predation on native Cx. pervigilans but not effect on predation on exotic Ae. notoscriptus. The second experiment revealed, again, that predation depended on both temperature and mosquito species with higher predation occurring at increased temperature, but also indicated life history traits could mediate the overall effect of temperature-mediated predation. Overall, I have shown that interactions between temperature, predator identity and mosquito species will be very important in determining the potential for mosquitoes to invade under a changing climate. Considering effects of both climate change and land-use-driven habitat modification on the invasion potential of mosquitoes in freshwater communities will therefore be important for managing both native species decline and spread of invaders. Moreover, research and management decisions on critical species like mosquitoes will need to encompass multiple drivers of climate change at both global and local scales.

Climate changes affect species interactions which can have cascading effect up to the ecosystem level. This work investigates the effects of temperature and predator size on predator prey interactions by measuring the feeding rates of predators and metabolic rates of both predator and prey, using dragonfly larvae Aeshna cyanea and toad tadpoles Bufo bufo as a model system. Possible consequences of the findings for the impacts of climate change and predation on amphibian populations are discussed.

Here I provide the first report on Geukensia granosissima patterns of abundance along a tidal gradient within a mixed mangrove stand located in Tampa Bay, Florida, USA. Specifically, I examined 1) the relationship between G. granosissima size and density with mangrove root type (e.g. prop root, pneumatophore), and of density within the intertidal zones; and 2) the possible role of predation in shaping the lower zonation patterns displayed. Transect surveys located along the lower and upper population limit boundaries were conducted every two months over a ten-month period. Variables measured include size distribution, density of mussels, above ground mangrove prop and pneumatophore roots. To evaluate potential predator influence on mussel distribution, predator exclusion experiments were conducted in March and June 2016, using mock pneumatophore platforms at both high and low tidal elevations. Surveys indicated that over all dates mean mussel densities and percent cover were higher along the lower limit tidal elevation [mean (± SD) = 1280.3 ± 665.9 m-2 and 20.6 ± 3.78% respectively], versus that in the higher limit tidal elevation [102.4 ± 50.7 m-2 and 0.52 ± 0.17%]. Survivorship of mussels in the predator exclusion platforms placed at higher position within lower edge of the mussel tidal distribution was approximately 100% on both experimental dates. During March 2016, mussel survivorship was lower when predators had access to mussels with the greatest loss of mussels in the lower (26% survivorship) vs. higher (66.5%) tidal elevations after 48h. Similarly, when predators had access to mussels in June experiments, after just 24 h mussel loss was greater at lower (1% survivorship) vs. higher (80% survivorship) tidal elevations, possibly reflecting differences in predator densities, identities, and/or functional responses. Overall trends in the patterns of distribution of this population of G. granosissima suggest that the lower tidal boundary of the mussel is shaped by predation but that predation plays a lesser role in the high tidal areas.

Marine Protected Areas (MPAs) are a management tool used to protect and sustain many ecologically and economically important fish species from overexploitation by recreational and commercial fishing. Lingcod (Ophiodon elongatus) and some of its prey species, such as rockfish (Sebastes spp.), are species that are protected from fishing in some California MPAs. Lingcod is an apex predator that consumes a variety of fish and invertebrate species. In this study, I sought to assess the effect of an MPA on the abundance, size and diet of Lingcod. I hypothesized that Lingcod in a no-take MPA would be more abundant and larger than Lingcod in an adjacent reference site (REF) that was open to fishing. Furthermore, I hypothesized that diet would differ between Lingcod in caught the MPA and Lingcod in the REF. I collected Lingcod from the Point Buchon State Marine Reserve (MPA) and an adjacent REF site that was open to fishing. I measured, weighed, sexed, and collected stomach contents from Lingcod using the gastric lavage (stomach pumping) technique. Then, I identified prey items from Lingcod stomach contents down to the lowest taxonomic level possible and quantified diet composition by percent by occurrence, percent by number, and percent by mass. Lingcod in the MPA consumed more fish prey items than Lingcod in the REF site. Lingcod in the REF consumed more cephalopod prey items than Lingcod in the MPA. I analyzed the four most common prey items (rockfish, anchovies, flatfish, and octopus) for nutritional content. My data suggest that Lingcod increased in size and abundance in a no-take MPA because they do not suffer from fishing mortality. However, a more nutritious diet could also contribute to a biologically significant advantage for Lingcod in the MPA. To address this would require further research focused on calculating the net energy (gross energy extracted from the prey item minus the energetic costs of handling and digesting the prey item) obtained by Lingcod from consuming different fish and cephalopod prey items. MPAs can be an effective management tool for protecting fish stocks, although, it is important to understand the interspecific interactions between predator and prey species to adaptively mange MPAs and the species that reside within them.

Numerous studies have focused on the drivers of diversity and stability of communities, especially under global change. However, multi-dimensionality of ecosystems due to biotic components (e.g predation, competition and adaptive dynamics) and abiotic factors (e.g. disturbances, resource dynamics and their distinct attributes) cause context-dependent outcomes and challenge the predictions. There are still controversies around complex community dynamics under varying regimes, however, finding mechanistical explanations will illuminate the fate of multispecies assemblages. Using model microbial communities, consisting of bacterial prey and protist predator, combined with simulation modelling and advanced statistics, this thesis investigated the impact of imposed disturbances (i.e. increased dilution rates that simulate density-independent mortality as press or pulse disturbances) (i) on transient recovery dynamics of a simple microbial food web, and (ii) on bacterial abundance, diversity and community structure in the absence or presence of a protist predator. In addition, this thesis questioned the impacts of species interactions and rapid trait shifts, as a response to predation and competition, on the community dynamics and stability. Our results revealed that the predator suffered more from disturbances over longer time periods. Reduced predation pressure caused a transient phase of prey release during and even after disturbances. Recovery time depended on the strength and duration of disturbances, however, coupling to an alternative resource increased the chance of fast recovery and stabilized the communities. In multi-species prey communities, bacterial abundance, diversity, and community composition were more affected by predation than by the disturbances and resource dynamics. Predator abundance, on the other hand, was strongly affected by the type of disturbance imposed. Importantly, community attributes had differential sensitivities, as reflected by their different response and recovery dynamics. Prey community dynamics varied more temporally andwere less stable under predation stress, while prey diversity increased significantly. Predation rapidly induced anti-predation traits, which altered population dynamics of both prey and predator. More importantly, predator and the resistant prey, in turn, elevated the number of direct cause-effect relationships between the community members. Our findings are not limited to the studied system and can be used to understand the dynamic response and recovery potential of many natural predator-prey or host-pathogen systems. They can be used as a base for future studies to illuminate the debates on the future communities.:Summary Zusammenfassung 1 Scope and Outline 2 General Introduction 2.1 Context dependency of community dynamics 2.2 Ecological disturbances 2.2.1 Transient dynamics and stability 2.2.2 Catastrophic shifts 2.3 Species interactions and evolutionary dynamics under environmental change 2.3.1 Species interactions and coexistence 2.4 Eco-evolutionary dynamics 2.5 Community assembly mechanisms 2.6 Dealing with complexities 2.6.1 Microbial model systems as a tool in ecology 2.6.2 Correlation, causation and the future of predictions 2.7 Aims of this study 3 Community Dynamics under Disturbances 3.1 Transient recovery dynamics of a predator-prey system 4 Interactions of Community Drivers 4.1 Interactions between predation and disturbances shape prey communities 5 Species Interactions and Evolutionary Dynamics Shaping Communities 5.1 Summary 5.2 Introduction 5.2.1 Predator-Prey Dynamics and Community Stability 5.2.2 Causal inferences 5.3 Aim of the study 5.4 Methods 5.4.1 Organisms 5.4.2 Microcosm experiments and estimation of species abundances 5.4.3 Statistical analysis 5.5 Results 5.5.1 Community dynamics 5.5.2 Dynamics of prey diversity and community stability 5.5.3 Causal links between the species dynamics 5.6 Discussion 5.7 Synopsis 6 General Discussion 6.1 Communities under disturbances: Predator{ prey dynamics 6.2 Temporal species dynamics and community assembly Synthesis and Outlook 7.1 Increasing complexity of species interactions 7.2 Going further from causal links 7.3 Metacommunities References 8 Appendix 8.1 Declaration of the authorship 8.2 Author contributions of published articles 8.3 List of publications and conference contributions 8.4 Acknowledgments 8.5 Supplementary material for Chapter 3 8.6 Supplementary material for Chapter 4 8.7 Supplementary material for Chapter 5

The Arctic is warming faster than any other region of the globe. To conserve and manage many thousands of lakes across arctic landscapes, scientists need to understand historic and present conditions within these lakes to predict how the lakes, and the organisms that inhabit them, may respond to a changing climate. The goal of my research was to improve our understanding of what physical, chemical, and biological factors contribute to: 1) how lake food webs are assembled; and, 2) how these food webs may change in the future. First, I used long-term observations and lab experiments to determine how fish food, including zooplankton and snails, may respond to a warming climate. I then used field measurements of arctic char (Salvelinus alpinus) body characteristics, genetic samples, and fish diets to investigate if, and potentially why, populations of arctic char across a series of lakes achieve different maximum body sizes. Finally, as a method of monitoring population-level changes of fish abundance, I collected samples of arctic char DNA in lake water to test if estimated arctic char population abundances within a given lake correspond to the amount of DNA collected. Fish will require more food to eat as their metabolism increases with warming lake temperatures. Based on a thirty-year period of record, I determined zooplankton abundance increases in warmer years, indicating there is likely to be enough food for fishes in the future. Accordingly, zooplankton and snail abundance and development was also faster in warmer treatments of my lab experiments. My field observations indicated these are important prey items for arctic char. Small arctic char eat more zooplankton and large arctic char eat more snails, and these observations were consistent whether or not other predators are found in the particular lake. Similarly, my analyses did not indicate morphological or genetic differences between small and large arctic char within the same lake, suggesting arctic char size structure is determine by biological characteristics, including primary productivity and arctic char density. Indeed, estimates of arctic char population abundances across a series of lakes followed a gradient of arctic char densities, and my DNA sampling corresponded with this gradient. As there are thousands of lakes across the Arctic, my research demonstrates lake food webs, and the fishes within them, are likely to adapt to a warming climate. However, biological, chemical, and physical properties of these lakes can vary widely such that management and conservation plans may need to be developed at relatively small spatial scales across a large landscape.

Functional response is the framework thorough which we can quantify how predator hunting behaviors such as rate of successful attack and time spent handling prey interact with prey density to determine the rate at which prey are killed. Cheetahs are mesopredators and their behavior can be shaped by the need to avoid larger predators while hunting relatively large bodied and mobile prey. I used data from 34 years of observed cheetah hunts in Serengeti National Park in Tanzania to investigate how reproductive condition, prey density, seasonality, and the proximity of larger predators affect cheetah kill rates, probability of successful attack, and time spent handling prey. Mothers with cubs had an asymptotic Type II functional response where kill rate increased but eventually leveled-off at high prey densities, while cheetahs without cubs had a dome shaped Type IV functional response where kill rates actually declined at high prey density. Probability of successful attack on prey was higher for mothers with cubs, and increased slightly with prey density. Mothers with cubs had different prey handling behavior than other cheetahs. Cheetah mothers spend longer at kills then other cheetahs despite the risk that the carcass can attract lions and hyenas that could steal the carcass and potentially kill her cubs. Mothers must make sure their cubs have sufficient time at the carcass to eat their fill, thus they minimize risk from larger predators by being vigilant. In contrast, cheetahs without cubs are unconcerned with cub predation and can eat quickly to minimize the risk of kleptoparasitism. My results show how the pressures of cub rearing and coexisting with larger carnivores differentially shape the hunting behavior of cheetahs, and suggest that intensity of mesopredator suppression may depend on individual variability. This is the first time the functional response for a large mesopredator, has been quantified and the first time a dome shaped response has been recorded in a mammal. My work shows the value in accounting for individual variability in functional response and how linking of carnivore hunting behavior to multiple species interactions advances our understanding of how classical ecological theory applies to wild ecosystems. / Ph. D.