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Les rongeurs commensaux sont responsables de grands dommages en agriculture et dans les zones urbaines. En tant qu’espèces invasives, elles peuvent mettre en danger les espèces locales et sont porteurs et vecteurs de plusieurs zoonoses importantes. Les méthodes de contrôle sont basées principalement sur l’utilisation des warfarines, lesquelles produisent un grand nombre d’intoxications sur des espèces non ciblées et ont perdu une partie de leur efficacité à cause des résistances génétiques constatées chez les espèces cibles. De plus, ces méthodes sont considérées comme inhumaines parce qu’elles causent une mort lente et douloureuse par hémorragies. L’olfaction est une source principale d’évaluation des risques présents dans l’environnement pour les rongeurs, avec la perception des signaux chimiques des prédateurs ou signaux de toxicité des plants/nourriture. Cette perception olfactive peut être utilisé pour modifier l’utilisation de l’espace des rongeurs. L’objectif de cette thèse était l’identification des réponses comportementales aux messages chimiques importants (par exemple les signaux chimiques émis par les plantes et les prédateurs) dans l’écologie de la souris domestique (Mus musculus), avec l’utilisation de souches de laboratoire comme modèle des animaux sauvages. Nos résultats ont montré que la souris a évité de façon significative les signaux chimiques complexes du furet et un signal chimique ubiquitaire des plantes, lié à la maturation et la pourriture des aliments (l’éthanol). La protéine du chat Fel d 1, laquelle fait partie de la famille des sécrotoglobines et est un allergène majeur du chat, n’a pas modifié le comportement d’exploration de la souris ou son comportement de recherche et de consommation de nourriture. Le composant chimique des fèces de renard, le TMT a induit un évitement clair et des réponses de stress comme cela a été rapporté dans la littérature. De plus, j’ai fait une revue de la littérature pour évaluer et discuter les méthodes de contrôle des rongeurs d’un point de vue éthique, revue qui a démontré que les méthodes actuelles peuvent être considérés inhumaines et ne correspondent pas aux attentes actuelles de la société et aux standards sur le bien-être dans d’autres domaines comme les élevages de production ou les animaux de laboratoire. Ces résultats ouvrent des nouvelles voies de recherche afin d’identifier les composants chimiques du furet et des plantes liés au comportement d’évitement des rongeurs, les prochaines étapes utilisant des animaux sauvages à la fois en laboratoire et sur le terrain. / Rodent commensal species produce great damage in agriculture and urban areas. As invasive species they can endanger local species and are carriers and vectors of several important zoonoses. Control methods rely mainly on the use of warfarins, which can be inadvertently be taken up by untargeted species. Warfarins have also lost their efficacy in rodents due to the development of genetic resistance. In addition, these methods are considered inhumane as they cause a slow and painful death due to haemorrhages. Olfaction is a main source for environmental risk assessment by rodents, and it can be used to modify their use of space. My aim in this thesis was to identify behavioural reactions of the house mouse (Mus musculus), using laboratory strains as models of wild animals, to ecologically meaningful chemical messages, including predator and plant chemical olfactory cues. My results showed that mice avoided complex ferret olfactory cues and ethanol which is a ubiquitous chemical related to fruit rotting and ripening. The feline protein Fel d 1, which belongs to the secretoglobin family and is a major cat allergen in humans, did not elicit significant avoidance or alter foraging behaviour in mice. However, Trimethylthiazoline purified from fox faeces, elicited clear avoidance behaviour and stress responses. I carried out a bibliographic review to evaluate and discuss rodent pest control methods from an ethical standpoint. This literature showed that many of the current methods of pest control are considered inhumane, and do not tally with current society concerns and welfare standards in other domains such as farms or laboratory animals. These results raise new research questions to identify ferret and plant chemical compounds that can induce rodent avoidance, and to carry out next stage of research with wild animals both under laboratory and field conditions.

Prédateurs et proies sont entraînés dans une course spatiale où les prédateurs cherchent à sélectionner les zones du paysage avec une forte disponibilité en proies alors que les proies tentent d’éviter les zones du paysage avec une forte probabilité de rencontrer un prédateur. Ils procèdent incessamment à de nombreux choix susceptibles de modifier l’issue de cette course. Ainsi, en sélectionnant des endroits différents, ils peuvent tenter d'altérer les probabilités de détection, de rencontre ou encore la probabilité de réussite d’une attaque. De nombreuses études empiriques montrent l’importance de l’habitat dans ces choix. On connaît par contre peu les mécanismes de recherche (par les prédateurs) ou d’évitement (par les proies) qui ne seraient pas relatifs à l’habitat. La course spatiale ne résume cependant pas entièrement l’interaction entre prédateurs et proies, laquelle dépend de nombreux comportements non-spatiaux. La vigilance et la socialité des proies constituent des défenses relativement répandues. On a aussi fréquemment observé de nombreux exemples où les proies deviennent actives à un autre moment de la journée pour échapper à leur prédateur. Cependant, on connaît relativement peu les interactions de ces comportements avec la dimension spatiale du jeu proie-prédateur. Dans cette thèse, j'ai pour objectif de combler ces différents manques. Dans le premier chapitre, je propose un modèle théorique montrant l’importance de la prise en compte des comportements spatiaux dans l’interaction classique entre vigilance et taille de groupe chez les proies. Dans le second chapitre, je présente un mécanisme d’évitement des prédateurs par les proies, s'appuyant sur les ancres spatiales et temporelles des prédateurs et ne dépendant pas de l’habitat. Enfin, dans le dernier chapitre, je développe un modèle de choix de parcelles permettant de prévoir comment les connaissances passées sont susceptibles d'être utilisées pour orienter les déplacements. Ce modèle rappelle notamment l’importance de l’imprévisibilité du déplacement dans le jeu prédateur-proie. Ces différents travaux se placent dans le cadre d’une écologie comportementale du paysage et visent à intégrer des mécanismes comportementaux dans l’étude des dynamiques écologiques à l’échelle du paysage. / Predators and prey engage into a space race where predators seek to select areas with high prey availability while prey try to avoid areas with a high probability of encountering a predator. Predators and prey continuously make choices that can alter the outcome of this space race. For example, by using different locations in the landscape, they can alter the probability of an encounter, the probabilities of detection or the probability of success of an attack. Many empirical studies show the importance of habitat in these choices. On the other hand, little is known about avoidance by prey or predator search strategies that would be unrelated to habitat. The space race, however, does not fully summarize the interaction between predators and prey, which also depends on many non-spatial behaviors. The vigilance and grouping behaviour of prey are relatively common defenses, and there are many examples where prey become active at another time of day to escape their predator. However, it is still unclear how those behaviors interact with the spatial dimension of the prey-predator game. In this thesis, I will try to fill these gaps. In the first chapter, I propose a theoretical model showing the importance of accounting for spatial behaviors when studying the classical interaction between vigilance and group size in prey. In the second chapter, I present a mechanism of predator avoidance by prey, relying on the spatial and temporal anchors of predators and independent on the habitat. Finally, in the last chapter, I develop a patch selection model to predict how past information should be used to determine movement. This model emphasize the importance of movement unpredictability in the predator-prey game. These different works are part of a behavioral ecology of the landscape and aim to integrate behavioral mechanisms in the study of ecological dynamics at the landscape scale.

Many prey species lack innate recognition of their potential predators. Hence, learning is required for them to recognize and respond to predation threats. When wild-caught, these same species may show amazing sophistication in their responses to predator cues. They are able to adjust the intensity of their antipredator responses to a particular predator according to the degree of threat posed by that predator. This ability is therefore acquired through learning. While many studies have shown that prey can learn to respond to predator cues through different learning modes, little is known about what the prey are actually learning. The results presented in this thesis show that learned predator recognition goes beyond the simple labelling of predators as dangerous. Using fathead minnows (Pimephales promelas), woodfrog (Rana sylvatica) tadpoles and boreal chorus frog (Pseudacris maculata) tadpoles, I demonstrated that a one time learning event, either through pairing with alarm cues or through social learning, was enough for prey to learn the level of threat associated with the novel predator cues. I showed that the level of danger associated with the predator cues was determined by the concentration of alarm cues when learning through pairing of alarm cues, or by the intensity of antipredator response displayed by the tutors and by the tutor-to-observer ratio when learning occurred through cultural transmission. Moreover, when subsequently exposed to predator cues, prey adjusted their antipredator responses according to the change in concentration of predator cues between the learning event and the subsequent exposure. Prey displayed stronger antipredator responses when exposed to higher concentrations of predator cues and vice versa. When minnows were provided with conflicting information about the danger level associated with a predator, they displayed a safety strategy and used the most recent information available to respond to predation threats. On a longer time scale, the data also suggest that woodfrog tadpoles are able to learn to respond to predation threats according to the risk posed by the predator at different times of day. Finally, I showed that prey learn to recognize particular characteristics of predators and can generalize their antipredator responses to novel species sharing those characteristics. However, generalization of predator recognition is dependent on the level of risk associated with the predator. Threat-sensitive learning is an extremely complex process shaped by the millions of years of selection imposed by predators on prey.

Many prey species lack innate recognition of their potential predators. Hence, learning is required for them to recognize and respond to predation threats. When wild-caught, these same species may show amazing sophistication in their responses to predator cues. They are able to adjust the intensity of their antipredator responses to a particular predator according to the degree of threat posed by that predator. This ability is therefore acquired through learning. While many studies have shown that prey can learn to respond to predator cues through different learning modes, little is known about what the prey are actually learning. The results presented in this thesis show that learned predator recognition goes beyond the simple labelling of predators as dangerous. Using fathead minnows (Pimephales promelas), woodfrog (Rana sylvatica) tadpoles and boreal chorus frog (Pseudacris maculata) tadpoles, I demonstrated that a one time learning event, either through pairing with alarm cues or through social learning, was enough for prey to learn the level of threat associated with the novel predator cues. I showed that the level of danger associated with the predator cues was determined by the concentration of alarm cues when learning through pairing of alarm cues, or by the intensity of antipredator response displayed by the tutors and by the tutor-to-observer ratio when learning occurred through cultural transmission. Moreover, when subsequently exposed to predator cues, prey adjusted their antipredator responses according to the change in concentration of predator cues between the learning event and the subsequent exposure. Prey displayed stronger antipredator responses when exposed to higher concentrations of predator cues and vice versa. When minnows were provided with conflicting information about the danger level associated with a predator, they displayed a safety strategy and used the most recent information available to respond to predation threats. On a longer time scale, the data also suggest that woodfrog tadpoles are able to learn to respond to predation threats according to the risk posed by the predator at different times of day. Finally, I showed that prey learn to recognize particular characteristics of predators and can generalize their antipredator responses to novel species sharing those characteristics. However, generalization of predator recognition is dependent on the level of risk associated with the predator. Threat-sensitive learning is an extremely complex process shaped by the millions of years of selection imposed by predators on prey.

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Made available in DSpace on 2014-06-11T19:22:56Z (GMT). No. of bitstreams: 0 Previous issue date: 2010-03-29Bitstream added on 2014-06-13T19:08:31Z : No. of bitstreams: 1 provete_db_me_sjrp.pdf: 1175451 bytes, checksum: 67537c8f0f07b7c8a68bfe408c754c71 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / Girinos são um importante componente de ecossistemas de água doce e, ao longo dos últimos trinta anos, vêm sendo utilizados como modelos para testar hipóteses em ecologia de comunidades. O conjunto de informações disponível atualmente sugere que a presença de predadores influencia a abundância e o uso de hábitat por girinos e, conseqüentemente, a estrutura da comunidade. O objetivo deste estudo foi determinar o uso de recursos e investigar a influência de predadores na distribuição espacial de espécies e na estrutura de comunidades de girinos. As principais questões deste estudo foram: 1) qual o papel dos fatores abióticos na estruturação de comunidades de girinos?; 2) qual o grau de sobreposição de nicho entre as espécies nos três principais eixos de recursos: tempo (ocorrência sazonal), alimento e espaço (hábitat)?; 3) os girinos apresentam um padrão de distribuição não-aleatório em relação aos predadores? As amostragens tiveram freqüência mensal com coletas simultâneas de girinos e insetos predadores. Na caracterização dos corpos d’água foram utilizados dez descritores ambientais. Para determinar as guildas de espécies com relação ao uso de hábitat e ocorrência mensal foi implementada, respectivamente, uma análise de agrupamento e de ordenação por escalonamentro multidimensional não métrico. Para investigar a associação entre a abundância de girinos e os gradientes ambientais foi usada uma análise de correspondência canônica. A partilha de recursos entre girinos foi analisada utilizando-se uma análise de sobreposição de nicho em conjunto com um modelo nulo, considerando como eixos de recursos a ocorrência mensal, ocorrência nas poças e os itens alimentares. A análise da co-ocorrência pareada de girinos e predadores foi efetuada utilizando-se... / Tadpoles are an important component of freshwater ecossystems and in the last thirty years has been used as model organisms to test hypothesis in community ecology. The data currently available suggest that the presence of predators influences the abundance and habitat use by tadpoles and, consequently the community structure. The aims of this study were to establish how tadpoles divide resources and to investigate the influence of predators on species distribution and on community structure of tadpoles. The main questions were: 1) What is the role of abiotic factors in the community structure?; 2) What is the extent of niche overlap among species, considering the three main resource axes: time (seasonal occurrence), diet items and space (macrohabitat)?; 3) Tadpoles exhibit a non-random distribution pattern in relation to predaceous insects? We conducted monthly samplings to collect tadpoles and predaceous insects. We also used 10 environmental descriptors to characterize the water bodies. To recognize species guilds in relation to habitat use and monthly occurrence, we employed respectively a cluster analysis and a n-MDS, respectively. To investigate the association between species abundance and environmental gradients we used a canonical correspondence analysis. The resource partitioning among tadpoles was analyzed using a null model, considering as recource axes monthly occurrence, pond occupancy and diet items. The pair-wise co-occurrence analysis between tadpoles and predaceous insects was carried out using a null model. Our main findings demonstrate that forest canopy cover and pond hydroperiod were the main factors influencing species abundance along water bodies sampled. There was a species sorting along these two environmental gradients, with species restricted to both ends of these continuums. There was a high overlap in seasonal occurence... (Complete abstract click electronic access below)

Submitted by (ana.araujo@ufrpe.br) on 2016-06-01T16:43:16Z No. of bitstreams: 1 Cintia Maria Lopes Ferreira.pdf: 3870360 bytes, checksum: a5104bc0f1bab8950ee0485a7c45c453 (MD5) / Made available in DSpace on 2016-06-01T16:43:16Z (GMT). No. of bitstreams: 1 Cintia Maria Lopes Ferreira.pdf: 3870360 bytes, checksum: a5104bc0f1bab8950ee0485a7c45c453 (MD5) Previous issue date: 2012-08-24 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / The destruction of habitats is one of the most important factors leading to species extinction and loss of diversity, which is one of the most studied issues in biological and conservation in recent years. Since the human intervention on ecosystems is growing, resulting in fragmentation and loss of habitats, it is important to analyze the effects of these changes in spatial configuration have on ecological processes. In this work we aimed to study the dynamics of a model in which a predator and prey interact in a homogeneous environment with spatial structure when a proportion of the system is destroyed. We conducted this analysis using techniques from computer simulations as well as analytical tools. We obtained three different regimes depending on the values of model parameters in which there is coexistence of prey and predator, extinction of the predator with survival of prey and the extinction of prey leading to the extinction of the predator. We also studied the effects of destruction of a proportion of habitat on the system, and compared the results with those obtained for the case without fragmentation. We observed that increasing the number of destroyed sites leads to a reduction of the population of predators. We also observed that for a destruction of more than 15% of the sites, the regime of extinction of two species is no longer observed. / A destruição de habitats é um dos fatores mais relevantes que levam à extinção das espécies e perda da diversidade biológica e que é um dos assuntos de conservação mais estudados e debatidos nos últimos anos. Uma vez que a taxa de modificações humanas sobre os ecossistemas vem crescendo, resultando na fragmentação e perda de habitat, é importante analisar os efeitos que essas mudanças na configuração espacial têm nos processos ecológicos. Nesse trabalho tivemos como objetivo estudar a dinâmica de um modelo em que um predador e sua presa interagem em um ambiente homogêneo com estrutura espacial quando uma proporção do sistema é destruído. Realizamos essa análise através de técnicas de simulações computacionais e também ferramentas analíticas. Obtivemos três regimes diferentes dependentes dos valores dos parâmetros do modelo: coexistência de presa e predador, extinção do predador com sobrevivência da presa e extinção da presa levando a extinção do predador. Estudamos também os efeitos da destruição de uma proporção do habitat sobre o sistema, e comparamos os resultados com aqueles obtidos para o caso sem fragmentação. Observamos que o aumento na proporção de sítios destruídos leva a uma diminuição da população de predadores. Também observamos que para uma destruição de mais que 15% dos sítios, o regime de extinção das duas espécies não é mais observado.

Submitted by Claudinei Pracidelli (cpracide@ipen.br) on 2016-11-11T12:57:29Z No. of bitstreams: 0 / Made available in DSpace on 2016-11-11T12:57:29Z (GMT). No. of bitstreams: 0 / Neste trabalho buscou-se conhecer as perspectivas de sustentabilidade socioambiental no contexto do desenvolvimento do turismo na cidade de Mateiros/Tocantins. Para tanto, foi avaliada a aplicabilidade em destino de pequeno porte dos indicadores de sustentabilidade: Índice de Qualidade de Vida (IQV), Indicadores de Sustentabilidade da Organização das Nações Unidas (ONU) e Pegada Ecológica do Turismo. Percebeu-se que houve um incremento no IQV da cidade de Mateiros de 32,82% após o estabelecimento do turismo, com destaque para as famílias que atuam na produção das peças de artesanato de capim dourado. A mudança, de 0,162 para 0,215, indica que apesar de ter havido uma elevação na qualidade de vida das famílias entrevistadas, o IQV permaneceu baixo, isto é, com valores entre zero e 0,499. Tal fato demonstra que a qualidade de vida das famílias não é satisfatória. Quanto à ferramenta da ONU, percebeu-se que não há sistematização de dados suficientes para que esta ferramenta possa ser utilizada pelos órgãos governamentais na captação de recursos e utilização destes para criar novas políticas públicas para a região. Tal fato demonstra uma ineficácia em destinos de pequeno porte que se assemelhem à cidade de Mateiros na forma em que foi utilizado nesse trabalho. Quanto à Pegada Ecológica do Turismo, de acordo com a metodologia proposta, são necessários 2.194,2263 hectares de terras para absorver o CO2 demandado pela atividade turística na região. A categoria com maior impacto foi terras de energia fóssil na subcategoria transporte terrestre. Conclui-se, então, que os indicadores de sustentabilidade Pegada Ecológica do Turismo e Índice de Qualidade de Vida mostraram-se ferramentas eficazes para se avaliar as perspectivas de sustentabilidade de destinos de pequeno porte. / Tese (Doutorado em Tecnologia Nuclear) / IPEN/T / Instituto de Pesquisas Energeticas e Nucleares - IPEN-CNEN/SP

Bacteria are ubiquitous in all ecosystems and are often challenged by multiple stresses such as extreme temperatures, high salt concentrations, nutrient limitation, pH variations, radiation, predation and the presence of antibiotics/toxins. The most challenging among them is predation pressure which is one of the major causes of their mortality in different niches. Bacteria have evolved different adaptive measures to counter predation. Some of them include change in shape, size, motility, and unpalatable aggregate formation. Aromatic β-glucosides such as salicin, produced by plants as secondary metabolites, play a significant role in protecting them from herbivores. Members of the family Enterobaceriaceae primarily present in soil, e.g. Erwinia chrysanthemi (a phytopathogen) and Klebsiella aerogenes, can utilize the aromatic β-glucosides salicin and arbutin (likely to be present in soil derived from decomposing plant materials) as a carbon source unlike their fellow members such as Escherichia coli, Shigella sonnei, and Salmonella present in the gut environment. Bacteria can obtain energy by metabolizing β-glucosides in the form of glucose. Whether they can also use these molecules as defense tools in a manner similar to plants is an intriguing possibility. In such an event, Bgl+ bacteria could derive a dual advantage in terms of energy generation and protection from predation. The current study was initiated to investigate a possible link between β-glucoside metabolism and self-defense in Enterobacteriaceae. Different members of Enterobacteriaceae comprising of both laboratory strains and natural isolates were considered as prey. Predators included were laboratory strains and soil isolates of bacteriovorous nematodes of the Rhabditidae family, the amoeba Dictyostelium discoidium and a bacteriovorous Streptomyces sp. The predator-prey interaction was analyzed by performing viability and behavioral assays in the context of β-glucoside metabolism Results presented in Chapter 2 show that active catabolism of aromatic β¬glucosides like salicin, arbutin and esculin by Bgl+ bacteria decreases the viability of their predators. The aglycone products released during β-glucosides metabolism, e.g. saligenin in the case of salicin, are the causative agents of the mortality of the predators. The lethality is reversible up to a specific threshold of exposure. Saligenin acts as a chemo-attractant that lures and kills Caenorhabditis elegans N2. In the case of nematodes that succumb, bacteria can derive nutrition from the dead predators indicating a conversion of prey to predator. Experiments with mutant strains of Caenorhabditis elegans suggest that the dopaminergic receptor dop-1 is involved in mediating saligenin toxicity. Studies mentioned in Chapter 3 revolve around the relevance of the predator-prey interaction discussed in Chapter 2 in the natural environment. Members of Enterobacteriaceae and their predator amoebae (cellular slime molds) and nematodes were isolated from soil. They show coexistence in most of the soil samples analyzed. All the predators isolated from soil and other natural isolates of Caenorhabditis succumb to saligenin as their laboratory counterparts with higher sensitivity in some of the strains. Soil nematodes belonging to genera Oscheius and Mesorhabditis avoid saligenin unlike the members of Caenorhabditis genus which are attracted towards saligenin. This indicates that the soil nematodes are often exposed to saligenin or saligenin-like compounds, resulting in the evolution of a genetic machinery to avoid these toxic compounds. Studies with quasi-natural environments like soil and fruit indicate that β-glucoside metabolism have similar effects on predator prey interaction in these environments, reinforcing the relevance of these observations to the natural ecology of the organisms. The studies reported in Chapter 2 and 3 shed light on a novel defense strategy of otherwise non-pathogenic members of Enterobacteriaceae which comes with a dual advantage. These results have also brought into focus issues such as the benefit derived by bacterial populations that are genetically heterogeneous, consisting of both Bgl+ and Bgl-strains. The broad implications and future directions of the work are discussed in Chapter 4. Work presented in Appendix deals with the investigation of the pattern of cellobiose utilization in Shigella sonnei. As mentioned in Chapter 1, it is known that members of Enterobacteriaceae exhibit diversity in their pattern of β-glucoside utilization. Wild type strains of both E. coli and Shigella sonnei are unable to utilize Arbutin, Salicin and Cellobiose. While E. coli can acquire cellobiose utilizing ability directly from the wild type state (Arb-Sal-Cel-), Shigella sonnei strains, though closely related to E. coli, have to undergo a series of mutations in a specific sequence to become capable of utilizing these sugars. Characterization of a few Shigella sonnei Cel+ mutants showed a different mode of activation of the chb operon (known to be involved in cellobiose utilization in E. coli). Considering the ecological significance of the ability to hydrolyze aromatic β-glucosides, a detailed understanding of the metabolic capability of different strains and the molecular mechanism involved becomes significant.