Orientador: Mario Jose Abdalla Saad / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Ciencias Medicas / Made available in DSpace on 2018-08-10T08:45:52Z (GMT). No. of bitstreams: 1 Picardi_PatyKaroll_D.pdf: 1259568 bytes, checksum: e2ac94c827fe0b12673c8e88c5f9f7d7 (MD5) Previous issue date: 2007 / Resumo: A proteína tirosina fosfatase (PTP1B) tem sido implicada na regulação negativa da sinalização da insulina e leptina. Camundongos knockout para PTP1B são mais sensíveis à insulina e leptina e resistentes à obesidade quando alimentados com uma dieta rica em gordura. Investigamos também a função da PTP1B hipotalâmica na regulação da ingestão alimentar ações da insulina e leptina e sinalização em ratos através de um seletivo decréscimo na expressão da PTP1B. Geramos uma redução seletiva e transiente redução da PTP1B através da infusão de um oligonucleotídeo antisense, para bloquear a expressão da PTPT1B em áreas hipotalâmicas de ratos ao redor do terceiro ventrículo, em ratos-controle e obesos. A diminuição seletiva da PTP1B hipotalâmica resultou em diminuição da ingestão alimentar, redução do peso corporal, da adiposidade, dos níveis de leptina após uma alimentação rica em gordura. Ainda melhorou a ação e sinalização da leptina e insulina no hipotálamo e também a ação da insulina em fígado e músculo. Nossos resultados mostram que a redução da PTPT1B hipotalâmica pode ser suficiente para promover redução apreciável do peso corporal, melhora na sensibilidade e sinalização da insulina e leptina e na homeostase da glicose em ratos DIO / Abstract: Protein tyrosine phosphatase (PTP1B) has been implicated in the negative regulation of insulin and leptin signaling. PTP1B knockout mice are hypersensitive to insulin and leptin and resistant to obesity when fed a high-fat diet. We investigated the role of hypothalamic PTP1B in the regulation of food intake, insulin and leptin actions and signaling in rats through selective decreases in PTP1B expression in discrete hypothalamic nuclei. We generated a selective, transient reduction in PTP1B by infusion of an antisense oligonucleotide designed to blunt the expression of PTP1B in rat hypothalamic areas surrounding the third ventricle, in control and obese rats. The selective decrease in hypothalamic PTP1B resulted in decreased food intake, reduced body weight, reduced adiposity and reduced leptin levels after high-fat feeding, improved leptin and insulin action and signaling in hypothalamus and also in insulin action in liver and muscle. Our results show that hypothalamic PTP1B reduction should be sufficient to promote appreciable weight reduction and improve insulin and leptin sensitivity and signaling and glucose homeostasis in DIO rats / Doutorado / Clinica Medica / Doutor em Clínica Médica

SHP2, a protein-tyrosine phosphatase (PTP), is a key signaling regulator in multiple cell signaling processes including the Ras/MAPK pathway. This has led to SHP2 being identified as a therapeutic target in multiple types of cancers and autoimmune disorders. However, the role that the C-terminal residues play when they interact with other SHP2 domains remains unknown. This study presents data to illustrate that the C-terminal residues interact intramolecularly with other domains to inhibit PTP activity. Additionally, the identification of a specific and potent SHP2 inhibitor has proven difficult because of the high homology and positive nature of the PTP active site. This study presents the data from a high throughput fragment screen identifying several promising HIT compounds that may be further developed into potent and selective SHP2 inhibitors. Furthermore, data supporting the development of a selective SHP2 covalent inhibitor from a nonselective core molecule is presented.

No description available.

No description available.

Three distinct families of PTPs, the conventional (cPTPs), low molecular weight (LMW PTPs), and Cdc25 PTPs, have converged upon a common catalytic mechanism and active site sequence, mainly, the phosphate-binding loop encompassing the PTP signature motif (H/V)<b>C</b>(X)₅<b>R</b>(S/T) and an essential Asp residue on a surface loop. There is little sequence similarity among the three families of phosphatases. All known LMW PTP remove phosphoryl groups esterified to the hydroxyl amino acid: tyrosine, whereas all members of the Cdc25 family are dual-specificity protein phosphatases that dephosphorylate all the hydroxyl amino acids: tyrosine, serine and threonine. The cPTP family primarily functions as tyrosine phosphatases, but it also includes dual-specific members. ORFs encoding potential cPTPs have been identified in five archaeal species: <i>Methanobacterium thermoautotrophicum</i>, <i>Methanococcus jannaschii</i>, <i>Thermococcus kodakaraensis</i>, <i>Pyrococcus horikoshii</i>, and <i>S. solfataricus</i>. Only one has been partially characterized, <i>Tk</i>-PTP from <i>T. kodakaraensis</i>. Hence, our current body of knowledge concerning the functional properties and physiological roles of these enzymes remains fragmented. The genome of <i>S. solfataricus</i> encodes a single conventional protein tyrosine phosphatase, SsoPTP. SsoPTP is the smallest known archaeal PTP (18.3 kDa) with a primary amino acid sequence that conforms to the cPTP protein tyrosine phosphatase paradigm, HCX₅R(S/T). Relatively little is known about its mode of action " whether it follows the conventional PTP mechanism or employs a different route for catalysis " or its physiological role. ORF <i>sso2453</i> from the genome of <i>Sulfolobus solfataricus</i>, encoding a protein tyrosine phosphatase, was cloned and its recombinant protein product, SsoPTP, was expressed in <i>E. coli</i> and purified by immobilized metal affinity chromatography. SsoPTP displayed the ability to dephosphorylate protein-bound phosphotyrosine as well as protein-bound phosphoserine/phosphothreonine. SsoPTP hydrolyzed both isomers of naphthyl phosphate, an indication of dual specificity. The four conserved residues within the presumed active site sequence: Asp⁶⁹, His⁹⁵, and Arg¹⁰², and the invariant Gln¹³⁹ residue were essential for catalysis, as it was predicted for the established members of the PTP family in both bacteria and eukaryotes. A substrate trapping protein variant, SsoPTP-C96S/D69A, was constructed to isolate possible SsoPTP substrates present in <i>S. solfataricus</i> cell lysates. Several potential substrates were isolated and identified by mass spectroscopy. / Ph. D.

published_or_final_version / Zoology / Doctoral / Doctor of Philosophy

Tuberculose (TB) é um grave problema de saúde pública, sendo a segunda maior causa de morte entre doenças infecto contagiosas. Em 2014, 9,6 milhões de casos e, aproximadamente, 1,5 milhão de mortes foram reportados. O Programa Nacional de Controle da Tuberculose preconiza para o tratamento a administração simultânea de quatro medicamentos. Contudo, casos de tratamento inadequado favorecem o surgimento de cepas multirresistentes e extensivamente resistentes aos medicamentos disponíveis. Diante disso, torna-se urgente a necessidade de investigar novos alvos moleculares e desenvolver novos fármacos que sejam úteis e eficazes para o tratamento da infecção. As proteínas tirosina fosfatases (PTPs) constituem uma grande família de enzimas responsáveis pela hidrólise do fosfato ligado aos resíduos de tirosina em proteínas. A importância destas fosfatases reside no fato de estarem envolvidas na regulação de uma série de funções celulares, tais como crescimento, interação intercelular, metabolismo, transcrição, motilidade e resposta imune. A partir da análise do genoma do Mycabacteirum tuberculosis, foram identificadas duas proteínas tirosinas fosfatases (PtpA e PtpB), responsáveis pela sua sobrevivência nos macrófagos do hospedeiro. Ambas as enzimas têm sido exploradas como alvo molecular para o desenvolvimento de novos fármacos para a tuberculose. Nessa dissertação, as sequências gênicas que codificam para as enzimas PtpA e PtpB de M. tuberculosis foram clonadas com sucesso nos vetores de expressão. A expressão solúvel das proteínas permitiu o estabelecimento de um protocolo padronizado de purificação. Ensaios de cristalização foram conduzidos e cristais de proteínas obtidos tiveram os dados cristalográficos coletados. Para a enzima PtpB foi possível determinar a estrutura cristalográfica em alta resolução em complexo com um grupo fosfato no sítio catalítico. Essa estrutura foi então utilizada na etapa posterior de descoberta de novos candidatos a inibidores. Os trabalhos computacionais conduzidos incluíram uma combinação de estratégias para a identificação de pontos de interação relevantes para o processo de reconhecimento molecular e ligação bem como para a construção de modelos farmacofóricos 3D específicos para cada enzima. Esses dados foram utilizados para a seleção de um conjunto de 8 candidatos a inibidores da PtpA e 5 candidatos a inibidores da PtpB. Portanto, estudos de biologia molecular estrutural e química medicinal foram empregados com sucesso para o estabelecimento de uma plataforma produtiva dos alvos selecionados bem como para a seleção de novos candidatos a inibidores. / Tuberculosis (TB) is a serious public health problem and the second leading cause of death among infectious diseases. In 2014, 9.6 million cases, and approximately 1.5 million deaths were reported. The National Program for Tuberculosis Control recommends the simultaneous administration of four drugs as treatment for the disease. However, inadequate treatment determines the emergence of multidrug- and extensively-resistant strains to available drugs. Therefore, new molecular targets and drugs are urgently needed for the treatment of the infection. The protein tyrosine phosphatases (PTPs) are a large family of enzymes responsible for the hydrolysis of phosphate group bound to tyrosine residues in proteins. The importance of these molecules is related to the regulation of a number of cellular functions, including growth, intercellular interaction, metabolism, transcription, motility and immune response. Based on Mycabacteirum tuberculosis genome analysis, two protein tyrosine phosphatases (PTPA and PtpB) were related to mycobacterium survival in host macrophages. Both enzymes have been explored as a molecular target for the development of new drugs for TB. In this dissertation, the gene sequences encoding the enzymes PtpA and PtpB from M. tuberculosis were successfully cloned in expression vectors. The soluble expression of the proteins allowed the establishment of a standardized purification protocol. Crystallization assays were conducted, protein crystals were obtained, and crystallographic data were collected. We determine the crystallographic structure of PtpB in complex with a phosphate group in the catalytic site at high resolution. This structure was then used in the subsequent step for the discovery of new inhibitor candidates. Computational studies included a combination of strategies for identifying interaction points relevant to the process of molecular recognition and binding as well as the construction of 3D pharmacophore models specific for each enzyme. These data were used to select a set of 8 and 5 compounds as PtpA and PtpB inhibitor candidates, respectively. Therefore, structural molecular biology and medicinal chemistry studies have been successfully conducted for the establishment of a platform aimed to the production of the selected targets as well as for the selection of new inhibitor candidates.

by Paula A. Livingston. / Thesis (M.S.)--Florida Atlantic University, 2009. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2009. Mode of access: World Wide Web. / Two protein tyrosine phosphatases, dual specificity phosphatase PVP and low molecular weight phosphatase WZB were purified and characterized. PVP was expressed as inclusion bodies and a suitable purification and refolding method was devised. Enzyme kinetics revealed that p-nitrophenylphosphate and (Sb(B-naphthyl phosphate were substrates with KM of 4.0mM and 8.1mM respectively. PVP showed no reactivity towards phosphoserine. Kinetic characterization of WZB showed that only pnitrophenylphosphate was a substrate with no affinity for Ç-naphthyl phosphate and phosphoserine. Optimal conditions for activity with PNPP were found at a pH of 5 with a KM of 1.1mM, kcat of 35.4s-1 and kcat/KM of 32.2s-1mM-1. Inhibition studies showed that phosphate, fluoride, and molybdate were competitive inhibitors with Ki of 3.2mM, 71.7mM, and 50.4(So(BM respectively and hydrogen peroxide abolished activity. Active site mutants of WZB Cys9Ser and Asp115Asn showed no activity.

Tuberculose (TB) é um grave problema de saúde pública, sendo a segunda maior causa de morte entre doenças infecto contagiosas. Em 2014, 9,6 milhões de casos e, aproximadamente, 1,5 milhão de mortes foram reportados. O Programa Nacional de Controle da Tuberculose preconiza para o tratamento a administração simultânea de quatro medicamentos. Contudo, casos de tratamento inadequado favorecem o surgimento de cepas multirresistentes e extensivamente resistentes aos medicamentos disponíveis. Diante disso, torna-se urgente a necessidade de investigar novos alvos moleculares e desenvolver novos fármacos que sejam úteis e eficazes para o tratamento da infecção. As proteínas tirosina fosfatases (PTPs) constituem uma grande família de enzimas responsáveis pela hidrólise do fosfato ligado aos resíduos de tirosina em proteínas. A importância destas fosfatases reside no fato de estarem envolvidas na regulação de uma série de funções celulares, tais como crescimento, interação intercelular, metabolismo, transcrição, motilidade e resposta imune. A partir da análise do genoma do Mycabacteirum tuberculosis, foram identificadas duas proteínas tirosinas fosfatases (PtpA e PtpB), responsáveis pela sua sobrevivência nos macrófagos do hospedeiro. Ambas as enzimas têm sido exploradas como alvo molecular para o desenvolvimento de novos fármacos para a tuberculose. Nessa dissertação, as sequências gênicas que codificam para as enzimas PtpA e PtpB de M. tuberculosis foram clonadas com sucesso nos vetores de expressão. A expressão solúvel das proteínas permitiu o estabelecimento de um protocolo padronizado de purificação. Ensaios de cristalização foram conduzidos e cristais de proteínas obtidos tiveram os dados cristalográficos coletados. Para a enzima PtpB foi possível determinar a estrutura cristalográfica em alta resolução em complexo com um grupo fosfato no sítio catalítico. Essa estrutura foi então utilizada na etapa posterior de descoberta de novos candidatos a inibidores. Os trabalhos computacionais conduzidos incluíram uma combinação de estratégias para a identificação de pontos de interação relevantes para o processo de reconhecimento molecular e ligação bem como para a construção de modelos farmacofóricos 3D específicos para cada enzima. Esses dados foram utilizados para a seleção de um conjunto de 8 candidatos a inibidores da PtpA e 5 candidatos a inibidores da PtpB. Portanto, estudos de biologia molecular estrutural e química medicinal foram empregados com sucesso para o estabelecimento de uma plataforma produtiva dos alvos selecionados bem como para a seleção de novos candidatos a inibidores. / Tuberculosis (TB) is a serious public health problem and the second leading cause of death among infectious diseases. In 2014, 9.6 million cases, and approximately 1.5 million deaths were reported. The National Program for Tuberculosis Control recommends the simultaneous administration of four drugs as treatment for the disease. However, inadequate treatment determines the emergence of multidrug- and extensively-resistant strains to available drugs. Therefore, new molecular targets and drugs are urgently needed for the treatment of the infection. The protein tyrosine phosphatases (PTPs) are a large family of enzymes responsible for the hydrolysis of phosphate group bound to tyrosine residues in proteins. The importance of these molecules is related to the regulation of a number of cellular functions, including growth, intercellular interaction, metabolism, transcription, motility and immune response. Based on Mycabacteirum tuberculosis genome analysis, two protein tyrosine phosphatases (PTPA and PtpB) were related to mycobacterium survival in host macrophages. Both enzymes have been explored as a molecular target for the development of new drugs for TB. In this dissertation, the gene sequences encoding the enzymes PtpA and PtpB from M. tuberculosis were successfully cloned in expression vectors. The soluble expression of the proteins allowed the establishment of a standardized purification protocol. Crystallization assays were conducted, protein crystals were obtained, and crystallographic data were collected. We determine the crystallographic structure of PtpB in complex with a phosphate group in the catalytic site at high resolution. This structure was then used in the subsequent step for the discovery of new inhibitor candidates. Computational studies included a combination of strategies for identifying interaction points relevant to the process of molecular recognition and binding as well as the construction of 3D pharmacophore models specific for each enzyme. These data were used to select a set of 8 and 5 compounds as PtpA and PtpB inhibitor candidates, respectively. Therefore, structural molecular biology and medicinal chemistry studies have been successfully conducted for the establishment of a platform aimed to the production of the selected targets as well as for the selection of new inhibitor candidates.

<p>Tyrosine phosphorylation is a crucial mechanism in cellular signaling and regulates proliferation, differentiation, migration and adhesion. The phosphorylation reaction is reversible and is governed by two families of enzymes: protein tyrosine kinases and protein tyrosine phosphatases (PTPs). This thesis investigates the role of PTPs in regulating receptor protein tyrosine kinases (RTKs), and explores a mechanism for regulation of phosphatase activity.</p><p>Most receptor tyrosine kinases are activated by ligand induced dimerization, which results in an increase in receptor phosphorylation. Preparations of ligand-stimulated dimeric PDGF β-receptors were shown to be less susceptible to dephosphorylation compared with unstimulated receptors. This revealed that reduced receptor dephosphorylation contributes to ligand-induced increase in RTK phosphorylation.</p><p>The receptor-like phosphatase DEP-1 site-selectively dephosphorylates the PDGF β-receptor. One of the most preferred sites is the PLC-γ binding phosphotyrosine pY1021, and the autoregulatory pY857 is one of the least preferred sites. By using chimeric phospho-peptides derived from these two sites as substrate for DEP-1, it was shown that a lysine residue at position +3 acts as a negative determinant for DEP-1 and that an aspartic acid residue at position –1 is a positive determinant.</p><p>The modulatory effect of TC-PTP on PDGF β-receptor signaling was explored by using mouse embryonic fibroblasts derived from TC-PTP knockout mice. PDGF β-receptors derived from knockout cells exhibited a higher level of ligand-induced phosphorylation compared to receptors from wildtype cells. The increase was unevenly distributed between different autophosphorylation sites. The PLC-γ binding site, previously implicated in chemotactic response, displayed the largest increase. Consistently, a cell migration assay revealed hyper-responsiveness to PDGF of TC-PTP knockout cells as compared to wildtype cells.</p><p>Reversible oxidation of the active site cysteine in PTPs is a mechanism, which have been postulated to regulate phosphatase specific activity. An antibody-based generic method for detection of oxidized PTPs was developed. Using this method it was revealed for the first time that UV-induced inactivation of PTPs involves oxidation of the active site cysteine.</p>