Neuronal plasticity deficits underlie many of the neurobehavioral problems seen in Fetal Alcohol Spectrum Disorders (FASD). Recently, we showed that third trimester alcohol exposure lead to a persistent disruption in ocular dominance (OD) plasticity. For instance, few days of monocular deprivation results in a robust reduction of cortical regions responsive to the deprived eye in normal animals, but not in ferrets exposed early to alcohol. This plasticity deficit can be reversed if alcohol-exposed animals are treated with a phosphodiesterase type 1 (PDE1) inhibitor during the period of monocular deprivation. PDE1 inhibition can increase cAMP and cGMP levels, activating transcription factors such as the cAMP response element binding protein (CREB) and the Serum response factor (SRF). SRF is important for many plasticity processes such as LTP, LTD, spine motility and axonal pathfinding. Here we attempt to rescue OD plasticity in alcohol-treated ferrets using a Sindbis viral vector to express a constitutively active form of SRF during the period of monocular deprivation. Using optical imaging of intrinsic signals and single unit recordings we observed that overexpression of a constitutively active form of SRF (Sindbis SRF+), but neither its dominant negative (SRF-) nor GFP, restored OD plasticity in alcohol-treated animals. Surprisingly, this restoration was observed throughout the extent of the primary visual cortex and most cells infected by the virus were positive for GFAP rather than NeuN. Hence, we further tested whether overexpression of SRF exclusively in astrocytes is sufficient to restore OD plasticity in alcohol-exposed ferrets. To accomplish that, first we exposed cultured astrocytes to the SRF+, SRF- or control GFP viruses. After 24h, these astrocytes were implanted in the visual cortex of alcohol-exposed animals or saline controls one day before MD. Optical imaging of intrinsic signals showed that alcohol-exposed animals that were implanted with astrocytes expressing SRF, but not SRF- or GFP, showed robust restoration of OD plasticity in all visual cortex. These findings suggest that overexpression of SRF exclusively in astrocytes can improve neuronal plasticity in FASD.

Thesis (Ph. D.)--University of Virginia, 2008. / Title from title page. Includes bibliographical references. Also available online through Digital Dissertations.

In the light of today’s effort to achieve sustainable future of the planet, timber as building material makes a comeback on the construction market. Since the requirements on the buildings and the internal comfort increase, there is a need for finding new solutions and products; one of them is cross-laminated timber (CLT), which has the potential to be used for high-rise buildings due to its mechanical properties. The aim of this work was to study the vibration performance of CLT floors as it is often the governing factor in design of CLT structures unlike for other common building materials. The orthotropic mechanical properties of CLT were determined by the shear analogy method and verified with a finite element (FE) model of a simply supported beam compared to hand calculations of shear forces, bending moments and deflections. The properties based on Timoshenko’s approach were evaluated as less precise regarding the deflection. The non-composite structural behaviour of a steel-CLT hybrid floor structure was predicted for FE dynamic analysis based on a comparison between modelling exercise and hand calculations. Two different methods, the Concrete Society (SC) and Steel Construction Institution (SCI) methods, both seemed to be applicable for determination of the response factor first since the mechanical properties are not used as input in the calculations. These two methods differ in certain aspects, and based on FE analysis of simply supported slab even the resulting response factor for the CLT differs significantly. Moreover, the hand calculation results were similar to those of the FE analysis for the CS method, but in less agreement for the SCI method. Nevertheless, it is not recommended to reject the latter method based on this study and further studies should be performed on real structures with response factor known from on-site measurements. A part of the first floor of Canary Wharf College was modelled and analysed, and previous measurements of the frequency and response factors enabled a validation of some assumptions. The SCI approach showed to be inadequate for this type of structure and therefore only the CS method was applied further. Analysis of the floor structures supported by walls demonstrated similar results from both the measurements and the dynamic analysis. However, if the floor slab was supported by beams, the response factor was significantly overestimated although on the conservative side. This difference suggests that the modelling of such conditions are not satisfactory. The CS method appears to assess correctly the magnitude of the response factor for CLT floors supported by walls but overestimates it in case of beam supports. The first finding shall be confirmed through analysis of other structures and a more extensive research should focus on the latter one to determine more exact behaviour of the model under different conditions.

Le caoutchouc naturel (CN), a cis-1,4-polyisoprene, est produit principalement par Hevea brasiliensis. Le CN est un matériau très important pour l’industrie du transport et médicale. La demande en CN augmente d’année en année. Le CN est obtenu à partir du latex. Le latex s’écoule des laticifères après saignée de l’écorce des hévéas. L’éthéphon, un libérateur d’éthylène, peut être appliqué sur certains clones d’hévéa pour stimuler la production de latex. La saignée et la stimulation à l’éthéphon sont des stress de récolte conduisant à la production de métabolites secondaires et par conséquence au caoutchouc. La biosynthèse et la signalisation de l’éthylène (ET) et de l’acide jasmonique (JA) jouent un rôle crucial dans la réponse aux stress de récolte. Deux gènes codant des facteurs de réponse à l’éthylène (ethylene response factor, ERF), HbERF-IXc4 et HbERF-IXc5, ont été prédits être orthologue à ERF1 d’Arabidopsis. ERF1 est considéré comme un facteur clé de la réponse de défense à travers l’intégration des voies de signalisation de l’éthylène et du jasmonate. Les transcrits de HbERF-IXc4 et HbERF-IXc5 s’accumulent dramatiquement en réponse à des traitements combinant la blessure, le méthyl jasmonate, et l’éthylène. Ces facteurs sont ainsi supposés être des régulateurs clés au croisement des voies de signalisation de l’éthylène et du jasmonate dans les laticifères. HbERF-IXc4 et HbERF-IXc5 ont plusieurs caractéristiques des facteurs de transcription révélés respectivement lors des expériences de trans-activation et de localisation subcellulaire : ils peuvent activer des éléments GCC agissant en cis des promoteurs des gènes cibles et ils sont présents au niveau du noyau.Dans cette étude, l’analyse fonctionnelle des gènes HbERF-IXc4 et HbERF-IXc5 a été effectuées par sur-expression de ces gènes sous le contrôle de deux promoteurs, 35S CaMV et HEV2.1 dans des lignées transgéniques d’Hevea obtenues par transformation génétique via Agrobacterium tumefaciens. Cette sur-expression a conduit à augmenter les effets des gènes natifs HbERF-IXc4 et HbERF-IXc5. Vingt-neuf lignées à activité GFP ont été sélectionnées sur un milieu contenant de la paromomycine. Douze lignées ont permis régénérées des plantes mais seulement dix ont produit un nombre suffisant de plantes pour réaliser les observations de phénotypage avec au total 1622 plantes transgéniques acclimatées en serre. Ces dix lignées transgéniques ont été confirmées par hybridation moléculaire de type Southern. L’observation morphologique des plants jusqu’à un an montre que les deux gènes (HbERF-IXc4 and HbERF-IXc5) favorisent une meilleure croissance, en termes de hauteur des plants, du diamètre des tiges, et du poids frais et sec des parties aériennes et racinaires, avec une plus forte vigueur et tolérance aux stress abiotiques. Les plants sur-exprimant HbERF-IXc5 ont aussi une meilleure performance que ceux sur-exprimant HbERF-IXc4. Ces résultats montrent aussi un système racinaire plus vigoureux et bien équilibré par rapport à la plante entière. Les analyses de RT-PCR en temps réel révèlent que l’expression des gènes HbERF-IXc4 et HbERF-IXc5 est plus forte dans les lignées transgéniques que la lignée sauvage. L’analyse fine des lignées HbERF-IXc5 montre aussi des modifications anatomiques (activité cambiale, nombre de cellules laticifères, amidon, et largeur du xylème).Ce travail est la première analyse fonctionnelle de facteurs de transcription chez Hevea. Des différences ont été observées entre les lignées HbERF-IXc4 et HbERF-IXc5. Comme ERF1, HbERF-IXc4 et HbERF-IXc5 doivent diriger la réponse à certains stress. HbERF-IXc5 serait un régulateur de la différentiation des laticifers. Cette étude pourrait être complétée par des analyses dans des lignées éteintes pour ces gènes, une comparaison des transcriptomes et métabolome de lignées sauvages et transgéniques, et l’identification des gènes cibles contrôlés par HbERF-IXc4 et HbERF-IXc5. / Natural rubber (NR) (cis-1,4-polyisoprene) is the main production from Hevea brasiliensis. NR is a very important industrial material for transportation, consumer, and medical. The demand for NR is increasing from year to year. NR is obtained from latex. The latex flows out from laticifers after tapping the bark. Ethephon, an ethylene releaser, can be applied on certain clones to stimulate the latex production. Tapping and ethephon stimulation are sources of harvesting stresses conducing to the production of secondary metabolites and consequent rubber. Ethylene (ET) and jasmonic acid (JA) biosynthesis and signalling pathways play a crucial role in the response to latex harvesting stress. Two Hevea ethylene response factor genes, HbERF-IXc4 and HbERF-IXc5, were predicted to be orthologue to ERF1 from Arabidopsis. ERF1 was suggested to be a key component of defence responses through the integration of ethylene and jasmonic acid signalling pathways. Transcripts of HbERF-IXc4 and HbERF-IXc5 were dramatically accumulated by combining wounding, methyl jasmonate, and ethylene treatment. These factors were assumed to be a key regulator at the crosstalk of ethylene and jasmonate signalling pathways in latex cells. HbERF-IXc4 and HbERF-IXc5 have several features of transcription factor revealed by transactivation experiment and subcellular localization, respectively: they can activate the GCC cis-acting element of promoters of target genes and are localized in nucleus, In this study, functional analysis of HbERF-IXc4 and HbERF-IXc5 genes have been carried out by overexpression under control of two promoters, 35S CaMV and HEV2.1 in transgenic Hevea lines obtained by Agrobacterium tumefaciens-mediated genetic transformation. This overexpression led to emphasize the effect of native HbERF-IXc4 and HbERF-IXc5 genes. Twenty-nine GFP-positive lines were established on paromomycin selection medium. Twelve lines regenerated plants but only ten led to produce a sufficient number of plants for further phenotyping with totally 1,622 transgenic plants in greenhouse. These ten ines were confirmed as transgenic by Southern blot hybridization. Observation of morphology until one year showed both genes (HbERF-IXc4 and HbERF-IXc5) promoted a better growth in terms of plant height, stem diameter, and weight of aerial and root system with higher vigour and better tolerance to some abiotic stresses. Plants overexpressing HbERF-IXc5 have also a better performance than HbERF-IXc4. Data also showed a vigorous root system well balanced with regard to the whole plant. Real-time RT-PCR analyses revealed that expression of HbERF-IXc4 and HbERF-IXc5 genes was higher in transgenic lines compared to wild-type . Analysis in details of HbERF-IXc5 lines also showed some changes in anatomy (cambium activity, number of latex cells, starch, and width of xylem).This work is the first successful functional analysis of transcription factors in Hevea. Some differences have been observed between HbERF-IXc4 and HbERF-IXc5. As ERF1, HbERF-IXc4 and HbERF-IXc5 should drive the response to some stresses. HbERF-IXc5 might be a regulator of laticifer differentiation. This study could be completed with analysis of silenced transgenic lines, comparison of transcriptome, metabolome of wild-type and transgenic lines, and identification of target genes controlled by HbERF-IXc4 and HbERF-IXc5.

Les derniers acteurs de la voie de signalisation à l’éthylène sont des facteurs de transcription appelés ERF (Ethylene Response Factors). La connaissance de leur rôle spécifique dans la régulation des processus développementaux dépendant de l’éthylène reste limitée. Les travaux présentés dans la thèse concernent la caractérisation fonctionnelle du gène Sl-ERF.B3, un membre de cette grande famille de régulateurs transcriptonnels dans la tomate (Solanum lycopersicum). Utilisant une stratégie répresseur dominant ; il est montré en particulier que ce gène intervient dans la mise en place de la réponse à l’éthylène et dans le contrôle de la maturation du fruit. L’expression d’une construction ERF.B3-SRDX, une version chimérique de Sl-ERF.B3 fusionné à un domaine répresseur de type EAR, entraine des phénotypes pléotropiques aussi bien dans la signalisation de l’éthylène que dans le développement des parties végétatives et des organes reproducteurs. Ainsi, une altération de la triple réponse à l’éthylène est constatée chez les lignées transgéniques et au stade adulte, les plantes présentent des phénotypes d’épinastie des feuilles, de sénescence prématurée des fleurs et d’abscission accélérée des fruits. L’ensemble de ces observations est corrélée avec une modification de l’expression de gènes impliqués dans la biosynthèse et la réponse à l’éthylène. Ces données suggèrent que ERF.B3 intervient dans un mécanisme de rétro-control de la réponse à l’éthylène en agissant à la fois sur les gènes de biosynthèse et de signalisation de l’hormone. Au niveau du fruit, la sur-expression d’ERF.B3-SRDX entraine une modification du processus de maturation avec un retard notable de l’avènement de l’acquisition de la compétence à murir. Cependant, une fois la maturation initiée, elle s’accompagne d’une forte production d’éthylène et d’une accélération du ramollissement du fruit. A l’inverse, l’accumulation de pigment est inhibée par altération de la voie de biosynthèse des caroténoïdes. Ces données phénotypiques sont corrélées avec le niveau d’expression des gènes clés impliqués dans ces processus. Les résultats indiquent que dans les lignées transgéniques, il y a découplage de certaines caractéristiques de la maturation du fruit et permettent de mettre en lumière le rôle d’ERF.B3 dans la régulation des processus de développement dépendant de l’éthylène chez la tomate. / Ethylene Response Factors (ERFs) are known to be the last transcription factors of the ethylene transduction pathway. Their specific role in ethylene-dependent developmental processes remains poorly understood. This work demonstrated a specific role of Sl- ERF.B3, a member of the ERF gene family in tomato (Solanum lycopersicum), in mediating ethylene response and fruit ripening through a dominant repressor strategy. ERF.B3-SRDX dominant repressor etiolated seedlings displayed partial constitutive ethylene-response in the absence of ethylene and adult plants exhibited typical ethylenerelated alterations such as leaf epinasty, premature flower senescence and accelerated fruit abscission. The multiple symptoms related to enhanced ethylene sensitivity correlate with the altered expression of ethylene biosynthesis and signaling genes, suggesting the involvement of Sl-ERF.B3 in a feedback mechanism regulating components of ethylene production and response. In addition, over-expression of ERF.B3-SRDX in tomato results in alterations in both fruit morphology and ripening process. The attainment of competence to ripen is dramatically delayed in ERF.B3-SRDX fruits but once ripening proceeds it is associated with high climacteric ethylene production and enhanced fruit softening while pigment accumulation is strongly reduced. Moreover, a number of genes involved in the fruit ripening process showed expression pattern deviating from that of wild type. These data suggest a putative role of Sl-ERF.B3 in the transcriptional network underlying the ripening process and uncover a mean for uncoupling some of the main features of fruit ripening such as fruit softening and pigment accumulation. Overall, the study highlighted the importance of an ERF gene in ethylene-mediated developmental processes such as plant growth and fruit ripening.

No description available.

No description available.

Polychlorinated dibenzo-p-dioxins (PCDDs) and dibenzofurans (PCDFs), and dioxin-like polychlorinated biphenyls (PCBs) have been assigned toxic equivalency factors (TEFs). These compounds are today routinely analysed with sophisticated analytical techniques. In a near future, there might be other dioxinlike compounds such as polychlorinated naphthalenes (PCNs), alkyl-polychlorodibenzofurans (R-PCDFs), and polychlorinated dibenzothiophenes (PCDTs) added to this list of toxic dioxin-like compounds. It is therefore important to have a readiness to analyse these new compounds in environmental samples. In this study, a multi-residue non-destructive analytical method for the analyses of these planar dioxin-like compound classes was developed. The use of HPLC PX-21 carbon column fractionation enabled the separation of interfering PCBs from coplanar PCBs and other planar dioxin-like compounds of interest. The obtained planar fraction containing the dioxin-like compounds was analysed using high-resolution GC-MS. Levels of PCNs in surface sediments and settling particulate matter in the northern Baltic Sea were determined. The concentrations of PCNs in background surface sediments were approximately 1 ng/g dw and the estimated PCN fluxes were similar to the pre-industrial levels determined in Europe. The PCN congener patterns in the surface sediments suggest that the PCNs deposited in the Baltic Sea originate from similar sources. Bioaccumulation of PCNs in a benthic food chain (sediment, amphipod, isopod, and four-horned sculpin) from the Gulf of Bothnia was studied. The results indicated that only a few PCN congeners biomagnified. The highest biomagnification factors (BMFs) were found for 2,3,6,7-substituted congeners and those lacking adjacent hydrogen-substituted carbon atoms. The calculated biota to sediment accumulation factors (BSAFs) showed that the tetra- and penta- CNs exhibited BSAF values higher than one, while BSAFs for the more chlorinated PCNs were less than one. A general difference between the northern and southern parts of the Gulf of Bothnia could be seen in the samples, with the lowest PCN and total PCB concentrations being found in the north and the highest in the south. This gradient is related to distance from the more industrialised and populated regions in the southern parts of Sweden and Finland, and central Europe. Analysis of R-PCDFs in crustacean samples from the Swedish west coast was performed using HRGC-MS/MS. The ΣR-PCDFs in these samples were present at concentrations up to 10 times higher than the ΣPCDFs. The relatively high concentrations of R-PCDFs in the crab samples demonstrate that these compounds bioaccumulate. The fate of a pollutant in the environment and the toxicity of a compound are governed by its physicochemical properties. The information found in a data set of properties can predict a compound’s mode of action. The following physicochemical properties for 87 PCDFs were measured: ultra-violetadsorption, relative retention times on two common gas chromatographic stationary phases, and relative mass spectrometric response factors using EI- and NCI- modes.

Indiana University-Purdue University Indianapolis (IUPUI) / Several common diseases such as atherosclerosis, post-angioplasty restenosis, and graft vasculopathies, are associated with the changes in the structure and function of smooth muscle cells. During the pathogenesis of these diseases, smooth muscle cells have a marked alteration in the expression of many smooth muscle-specific genes and smooth muscle cells undergo a phenotypic switch from the contractile/differentiated status to the proliferative/dedifferentiated one. Serum response factor (SRF) is the major transcription factor that plays an essential role in coordinating a variety of transcriptional events during this phenotypic change. The first goal of my thesis studies is to determine how SRF regulates the expression of smooth muscle myosin light chain kinase (smMLCK) to mediate changes in contractility. Using a combination of transgenic reporter mouse and knockout mouse models I demonstrated that a CArG element in intron 15 of the mylk1 gene is necessary for maximal transcription of smMLCK. SRF binding to this CArG element modulates the expression of smMLCK to control smooth muscle contractility. A second goal of my thesis work is to determine how SRF coordinates the activity of chromatin remodeling enzymes to control expression of microRNAs that regulate the phenotypes of smooth muscle cells. Using both mouse knockout models and in vitro studies in cultured smooth muscle cells I showed how SRF acts together with Brg1-containing chromatin remodeling complexes to regulate expression of microRNAs-143, 145, 133a and 133b. Moreover, I found that SRF transcription cofactor myocardin acts together with SRF to regulate expression of microRNAs-143 and 145 but not microRNAs-133a and 133b. SRF can, thus, further modulate gene expression through post-transcriptional mechanisms via changes in microRNA levels. Overall my research demonstrates that through direct interaction with a CArG box in the mylk1 gene, SRF is important for regulating expression of smMLCK to control smooth muscle contractility. Additionally, SRF is able to harness epigenetic mechanisms to modulate expression of smooth muscle contractile protein genes directly and indirectly via changes in microRNA expression. Together these mechanisms permit SRF to coordinate the complex phenotypic changes that occur in smooth muscle cells.