Analysis of rhesus monkey alphoid DNA suggests that it arose by tandem duplication of an ancestral monomer unit followed by independent variation within two adjacent monomers (one becoming more divergent than the other) before their amplification as a dimer unit to produce tandem arrays. The rhesus monkey alphoid DNA is a tandemly repeated, 343-bp dimer; the consensus dimer is over 98% homologous to the alphoid dimers reported for baboon and bonnet monkey, 81% homologous to the African green monkey alpha monomer, and less than 70% homologous to the more divergent human alphoid DNAs. The consensus dimer consists of two wings (I and II, 172 and 171 bp, respectively) that are only 70% homologous to each other, but share seven regions of exact homology. These same regions are highly conserved among the consensus sequences of the other cercopithecid alphoid DNAs. The three alpha-protein binding sites reported for African green monkey alpha DNA by F. Strauss and A. Varshavsky (Cell 37: 889-901, 1984) occur in wings I and II, but with one site altered in wing I. Two cloned dimer segments are 98% homologous to the consensus, each containing 8 single-base-pair differences within the 343-bp segment. Surprisingly, 37% of these differences occur in regions that are evolutionarily conserved in the alphoid consensus sequences, including the alpha-protein binding sites. Sequence variation in this highly repetitive DNA family may produce unique nucleosomal architectures for different members of an alphoid array. These unique architectures may modulate the evolution of these repetitive DNAs and may produce unique centromeric characteristics in primate chromosomes.

Adopted individuals have an increased risk for a variety of psychopathological disorders. Studies of the effects adoption in humans are difficult to perform because of the difficulty separating genetic risk and treatment effects. This is a developmental study investigating the effects of at birth adoption using a nonhuman primate model. Three experimental paradigms were used to assess maternal treatment, stress-related behavior, and physiology late in infancy and again later in life. Rhesus monkeys were reared for their first six months of life by either their biological mother or an unrelated, lactating adult female. Adoptions occurred immediately following birth. At six months of age, both groups were exposed to four, 4-day mother-infant separations. Behavioral observations and plasma stress hormones were used to compare the two group's responses to the separation stressor. Maternal treatments were also compared. In a second experiment performed about three years later when subjects were adolescents or young adults, an unfamiliar intruder was placed outside their home pen and stress-related behavioral responses were again measured. In the third experiment, adolescent subjects were allowed free access to a sweetened alcohol solution and daily alcohol consumption was measured across 8-10 weeks. Analyses showed that adopted subjects exhibited more behavior withdrawal and higher ACTH during the Acute and Chronic phases of the separation than infants reared by their biological mothers. This persisted when subjects were again tested with an intruder stressor 1-3 years later, with adopted subjects still showing more behavioral withdrawal during the Intruder Challenge stressor. Adopted subjects also differ in their relationship with their mother, showing more independence at an early age in non-stressful environments. Paradoxically, alcohol intake was lower in adolescents raised by an adoptive mother. Differences in maternal treatment and mismatches in temperament between the adopted mother and her infant are potential mechanisms that lead to the increased stress and anxiety in subjects raised by an adopted mother.

No description available.

No description available.

Le suivi des changements dans les populations de cellules immunitaires tels que les lymphocytes, monocytes et cellules dendritiques (DC) au cours de maladies infectieuses comme le virus de l'immunodéficience humaine (VIH) chez l’homme ou son équivalent chez le singe (VIS) est crucial. Grâce aux récentes avancées technologiques en cytométrie en flux, il est maintenant possible de mesurer et d’analyser simultanément jusqu'à 14 paramètres individuels à l’échelon cellulaire. L'objectif de ce travail consiste en la mise au point de 2 panels multicouleurs de 12 anticorps permettant d'analyser simultanément les principales populations de cellules immunitaires, respectivement chez l’humain et le macaque rhésus. Au terme de ce travail, il est maintenant possible de mesurer précisément tous les principaux acteurs du système immunitaire, à savoir les lymphocytes T CD4+ et T CD8+, les lymphocytes B, les cellules NK et NKT, les sous-populations de monocytes, et toutes les sous-populations de cellules dendritiques connues à ce jour, en utilisant une approche multiparamétrique de cytométrie en flux. Ce protocole d’analyse est réalisé sur du sang total, il est rapide, il n’implique pas de technique d’isolation cellulaire, et requiert une quantité minimum de sang. De plus, l’analyse de chaque population cellulaire est plus précise grâce à une contamination minimum entre les populations séparées. L’intérêt de ce travail est d’étudier les interactions entre les différentes populations de cellules immunitaires durant l’infection par VIH chez l’homme, ou VIS chez le singe ou potentiellement d‘autres maladies, et en particulier de mieux comprendre le rôle important que les cellules dendritiques jouent dans la progression de ces maladies. / Monitoring changes in immune cell populations such as lymphocytes, monocytes and dendritic cells (DC) during infectious diseases like human immunodeficiency virus (HIV) or its counterpart in rhesus monkeys (SIV) is crucial. Thanks to recent technological advances in flow cytometry, it is now possible to measure and analyze simultaneously up to 14 individual parameters at the single cell level.The goal of this work is to develop 2 multicolor flow cytometry panels comprising of 12 antibodies, allowing measuring simultaneously the main immune cells population, respectively in humans and rhesus monkeys. After 2 years of development and optimization, we can now measure precisely all the main actors of the immune system, that is CD4+ and CD8+ T lymphocytes, B lymphocytes, NK and NKT cells, the 3 monocyte subsets, and all the dendritic cell subsets known today, by using a multicolor flow cytometry approach. This assay is done on whole blood, it is rapid to do, it does not involve a cell isolation technique, and it requires only a minimum amount of blood. Moreover, the analysis of each population is much more precise because of a minimum contamination between different cell populations. The advantage of this work is to study interactions between different cell populations of immune cells during HIV infection in humans, or SIV infection in monkeys, or potentially other diseases, and in particular to better understand the important role that dendritic cells might play in disease progression.

No description available.

Le macaque rhésus infecté par le virus de l’immunodéficience simienne (SIV) fait l’objet de nombreuses études en tant que modèle de la pathogenèse induite par le virus de l’immunodéficience humaine de type 1 (VIH-1). Il existe deux sous-espèces de macaque rhésus définies notamment d’après leur origine géographique. Le macaque rhésus indien montre une progression pathologique particulièrement rapide, caractérisée par une déplétion massive de la population lymphocytaire T CD4+ intestinale les jours suivant l’infection. Cette déplétion a été associée à la translocation des bactéries commensales à travers l’épithélium intestinal en phase chronique. En revanche, chez le macaque rhésus chinois la vitesse de développement de la maladie est comparable à celle des patients infectés par le VIH-1. En périphérie, les données virales et immunologiques sont également plus proches de ce qui est documenté chez l’Homme infecté. Toutefois, la cinétique de dégradation de la muqueuse intestinale les jours suivant l’infection reste peu explorée dans ce modèle. Dans un premier temps, mes travaux de doctorat ont permis de confirmer la dissémination rapide du SIV dans le tractus gastro-intestinal du macaque rhésus d’origine chinoise. L’intestin grêle, notamment l’iléon, est la cible d’une réplication virale soutenue et très précoce. Malgré une réplication virale intense, le nombre de lymphocytes T CD4+ dans la muqueuse de l’iléon reste constant durant les deux premières semaines suivant l’infection par le virus dans ce modèle. Nous observons en revanche une augmentation conséquente du nombre de cellules T cytotoxiques et de macrophages, suggérant la mise en place d’une forte réponse immune in situ. Nous démontrons que l’augmentation du nombre de ces cellules et le maintien du nombre de lymphocytes T CD4+ dans la muqueuse iléale sont certainement liés, du moins en partie, au recrutement de cellules circulantes. En effet, nous décrivons pour la première fois une augmentation significative de l’expression de nombreuses chimiokines par cette muqueuse dès les premiers jours suivant l’infection. En parallèle nous décrivons, dans le sang périphérique, une diminution transitoire du nombre de lymphocytes T CD4+ et CD8+. Enfin, nous avons décelé une augmentation de l’expression d’interleukine 7 (IL-7) après infection. Cette augmentation, spécifiquement observée dans la muqueuse de l’intestin grêle, est corrélée à l’expression des chimiokines. Ces résultats apportent de nouveaux éléments sur la contribution de l’IL-7 dans la régulation de l’expression des chimiokines par la muqueuse intestinale suite à l’infection par le SIV. L’ensemble de nos résultats démontre que la population de lymphocytes T CD4+ de l’intestin grêle est préservée au cours de l’infection aiguë par le SIV chez le macaque rhésus chinois. En parallèle, l’exacerbation de l’expression locale de chimiokines laisse supposer une relocalisation des cellules du système immunitaire vers la muqueuse intestinale. Ces migrations pourraient avoir des effets délétères pour l’hôte en apportant de nouvelles cibles nourrissant la réplication virale. A l’opposé, le recrutement localisé de cellules immunitaires clés pour le déclenchement des réponses antivirales innées et adaptatives pourrait limiter la réplication du virus. Il est donc crucial de mieux définir l’impact de ce recrutement sur l’immunité muqueuse et la progression de la maladie. Nos découvertes apportent également de nouveaux arguments en faveur de l’utilisation du macaque rhésus d’origine chinoise en tant que modèle de choix pour l’étude de la physiopathologie de l’infection humaine par le VIH-1. / As a model to study type 1 human immunodeficiency virus (HIV-1) pathogenesis, rhesus macaques infected with the simian immunodeficiency virus (SIV) are under extensive investigation. Two subspecies of rhesus macaques have been defined, based on a different geographic origin. Indian rhesus macaques exhibit a rapid disease progression and acute infection is characterized by a massive CD4 T-cell loss in the intestinal mucosa. This was associated to the translocation of bacterial products through the gut epithelium during the chronic stage. Contrary to the animals of Indian origin, the pathogenesis of Chinese rhesus macaques infected with SIV is similar to HIV-1 infected patients. Viral and immunological settings in periphery are also closer to what is described in infected humans. However, the kinetics of mucosal disruption is poorly documented in this model. As a first step, I confirmed the rapid SIV dissemination in the gastro-intestinal tract of Chinese rhesus macaques. The small intestine, in particular the ileum, undergoes an early and high viral replication. Despite this high viral load, the numbers of CD4+ T cells in the ileum mucosa remains unchanged during the first two weeks following infection in this model. On the other hand, we noticed a substantial augmentation of cytotoxic T-cell numbers and macrophages, suggesting the establishment in situ of a strong immune response. We demonstrated that this augmentation of CD8+ T cells and macrophages together with the maintenance of helper T-cell numbers in the ileum mucosa are most probably related, at least in part, to the recruitment of circulating cells. Indeed, we describe for the first time a significant augmentation of numerous chemokine expressions by this mucosa the first days post-infection. At the same time, we described a transient diminution of CD4+ and CD8+ T-cell numbers in the blood. Finally, we detected a significant upregulation of interleukine 7 (IL-7) expression after SIV infection. This increase, specifically observed in the small intestine mucosa, is correlated to chemokine expressions. These results highlight new evidences on IL-7 contribution in the regulation of chemokines expression following SIV infection. All together, our results revealed the preservation of CD4+ T cell population in the small intestine mucosa during the acute phase of SIV infection in Chinese rhesus macaques. Furthermore, the exacerbation of local chemokine expressions let us think that immune cells are relocated to the intestinal mucosa the first days after infection. These migrations could have deleterious effects to the host, bringing new targets for viral replication. On the other side, this localized recruitment of immune cells that are key players in intestinal immunity could restrict the replication of the virus. Consequently, it is of major importance to better define the impact of immune cells trafficking on intestinal mucosa integrity and disease progression. Our findings bring new arguments in favor of Chinese rhesus macaque as a suitable model to study HIV-1 pathogenesis.

La prédiction de la zygotie à partir du génotype le plus probable en la comparant à la PCR-SSP, n’était pas fiable liée à la possibilité d’avoir d’autres génotypes possibles pour le même phénotype. En effet, la fréquence très proche de l’haplotype R0 et r dans la population tunisienne rend la déduction du génotype le plus probable très aléatoire. Dans un deuxième temps, l’évaluation de la méthode moléculaire la plus convenable à la détermination de la zygotie RHD a été réalisée par comparaison des trois techniques moléculaires (PCR-SSP, PCR-RFLP et Q-PCR) et par l’analyse des résultats discordants par séquençage du gène RHD et des « boîtes Rhésus ». L’analyse de 370 échantillons RH:1 à l'aide de ces trois tests moléculaires a montré que 81,9% des résultats étaient en concordance alors que 18,1% en discordance. L’analyse des cas discordants a montré que notre cohorte se compose de 193 sujets dizygotes et 145 hémizygotes et 32 dont la zygotie reste inconnue. Cette étude a révélé 19 nouveaux polymorphismes des « boîtes Rhésus » et a permis aussi de décrire trois nouveaux allèles RHD: RHD(Trp185Stop), RHD(Ala176Thr) et RHD(Ile342Ile). Cette étude a également mis en valeur l’hétérogénéité des « boîtes Rhésus » et la complexité des allèles RHD en décrivant les nouveaux polymorphismes obtenus, ce qui met en évidence les limites des approches moléculaires de la détermination de la zygotie. La Q-PCR a été la méthode la plus adaptée à la détermination de la zygotie, mais en raison des contraintes économiques locales, la PCR-RFLP pourrait être une alternative malgré l’hétérogénéité des « boîtes Rhésus » et la complexité du gène RHD. / Determination of paternal RHD zygosity can help the clinician to assess the risk of HDN. It was determined initially by both assignment of the most probable genotype and PCR-SSP. The prediction of zygosity based on the most probable genotype was not reliable due to the possibility of other genotypes for the same phenotype. In fact, the frequencies of R0 and r haplotypes in the Tunisian population are approached and make the deduction of the most probable genotype very aleatory. Secondly, the evaluation of the most convenient molecular method for RHD zygosity determination was realized by comparison of three molecular techniques (PCR-SSP, PCR-RFLP and RQ-PCR) and analysis of discordant results by sequencing of the RHD gene and Rhesus boxes. Analysis of 370 RH:1 samples by these three molecular tests showed concordant results in 81.9% and discordant results in 18.1%. Molecular investigations revealed that our cohort consists of 193 dizygous and 145 hemizygous samples and 32 which zygosity remains unknown. This study revealed 19 novel Rhesus boxes polymorphisms, and described 3 novel RHD alleles: RHD(Trp185Stop), RHD(Ala176Thr) and RHD(Ile342Ile). This study also underlined Rhesus boxes heterogeneity and RHD alleles complexity by describing of new polymorphisms which showed the limits of molecular approaches for RHD zygosity determination. RQ-PCR is the most convenient method for first intension paternal RHD zygosity determination in Tunisians. However taking into account local economic constraints PCR-RFLP could be an alternative despite the Rhesus boxes heterogeneity and RHD complexity.

The human intruder test (HIT) is a noninvasive tool widely used for assessing anxiety in rhesus macaques (Macaca mulatta). This thesis explores the HIT procedure and applies it to a population of monkeys with a self-injurious behavioral pathology. Individual variation on this test can be used to assess anxiety and temperament. The first experiment of this thesis applied two different procedures of the HIT to 17 monkeys at UMass. Monkeys displayed little response to the intruder, and no significant differences were detected for the two procedures. To determine whether these responses were unique to the UMass monkeys, their behavior was then compared to the behavior of monkeys at three other primate facilities. UMass monkeys showed less of a reaction compared to monkeys at other facilities. They came to the front of the cage when the intruder entered the room whereas the monkeys at other facilities moved to the back and showed virtually no threats to the intruder. One possible explanation is the increased exposure to humans that UMass monkeys experience. Even though the human running the HIT was a stranger, monkeys at UMass may not perceive a new human in front of their cage to be a threat. The second experiment tested the hypothesis that monkeys with a record of self-injurious behavior (SIB) would be more anxious in response to the HIT. The cage-side version of the HIT was applied to 41 monkeys with a record of self-injurious behavior and 36 matched controls. In contrast to our prediction, SIB subjects spent significantly less time showing anxious behavior and aggressive behavior toward the intruder as well as spent more time in the front of the cage. SIB subjects showed the same range of behaviors as controls, but significantly less behavioral change overall. These data add to the evidence from experiment one that the HIT may not be a sufficient novelty test to elicit a response in monkeys who are more often exposed to different people. An alternative explanation is that SIB is associated with a depressive like syndrome based on reduced overall activity and possibly lowered affect during the stare phase.

Many steps go into developing a clinical viral gene therapy. The course starts with appropriate disease selection and moves through the many hurdles of in-vitro testing, animal model validation and proof-of-concept studies, all the way through pre-clinical large animal studies. In this thesis, I propose to outline the process of developing a translation pathway for a gene therapy using recombinant adeno-associated virus (rAAV). I will expand on this outline using data that I have generated during the course of my Ph.D. that ranges from animal model validation all the way through pre-clinical vector stability studies. Two disease models will be discussed throughout this thesis, Cockayne Syndrome (CS) and Alpha-1 Antitrypsin Deficiency (AATD). Cockayne Syndrome is a rare autosomal recessive genetic disorder involving mutations in either the CSA or CSB gene, leading to defects in DNA repair. Clinically this presents as progressive degeneration of the central nervous system, retina, cardiovascular system, and cochlea, which leads to mental retardation, post-natal growth defects, ocular abnormalities, and shortened life expectancy. Alpha-1 antitrypsin is a serine protease inhibitor largely produced in the liver that mainly functions to inhibit neutrophil elastase within the lung. AATD leads to an increased risk of emphysema, with shortened life expectancy, and also results in accumulations of mutant AAT polymers in the liver, sometimes leading to liver failure. Using these two disease models I will outline the upstream and downstream pre-clinical work as well as the transition to clinical trials of a rAAV based gene therapy.