Rhodococcus has diverse metabolic capabilities, such as delaying ripening of certain climacteric fruit. Nitrile hydratase (NHase), amidase, 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase), cyanidase, and β-cyanoalanine synthase-like enzyme (βCAS-like) are possibly involved in fruit ripening. The activity of these enzymes in Rhodococcus rhodochrous DAP 96253 cells were induced with selected multiple inducers (i.e. cobalt and urea). This research showed that the supplementation of selected sugars, i.e. trehalose and maltodextrin in growth media and storage buffers of R. rhodochrous DAP 96253 affected activity and stability of the enzymes mentioned above. Thermostability and osmostability of the five enzymes in whole cells (plate grown and fermented) were evaluated in this study, i.e. βCAS-like was more stable than the other four enzymes in storage conditions. Immobilized biocatalysts have practical advantages over the use of “free” whole cells. Immobilization of whole rhodococcal cells (plate grown and fermented) was employed, using techniques such as glutaraldehyde-polyethylenimine (GA-PEI) cross-linking, waxing and calcium-alginate entrapment. The GA-PEI immobilized catalysts were non-replicating and more stable in storage conditions than the catalysts produced by the other two methods. Wax or calcium-alginate immobilized catalysts (live catalysts) showed higher enzyme activity than the GA-PEI catalyst. The effects of whole and immobilized catalysts were evaluated on delayed ripening of fruit. Both free whole cells and immobilized catalysts delayed the ripening of bananas and peaches. Delayed ripening experiments showed that the catalysts were effective in direct contact and not in contact with fruit. Moreover, both free whole cells and immobilized catalysts showed antifungal activity against Aspergillus niger and Penicillium spp. Gas chromatography was performed to analyze volatile interactions between the biocatalysts and fruit. This analysis revealed that cyanide in an atmosphere with ethylene was utilized by the biocatalysts. There was also less volatile production by exposed fruit (bananas) than fruit unexposed to biocatalysts, either rhodococcal immobilized catalysts or live whole cells (plate grown and fermented).

While Rhodococcus equi (R. equi) remains the most common cause of subacute or chronic granulomatous bronchopneumonia in foals, development of a relevant model to study this bacterium has proven difficult. As a result, the reasons for the underlying foal’s susceptibility to this disease are not well understood. Furthermore, data regarding the immune response of foals to R. equi infection remains controversial. We hypothesized that foals are susceptible to R. equi early in life and that this susceptibility decreases with age. Also, we hypothesized that specific subclasses of IgG antibodies to the virulence-associated protein of R. equi, VapA, predict the outcome of exposure. The objectives of this study were: (1) to develop an R. equi challenge model that resulted in slow progressive disease in some foals as well as spontaneous regression of lesions in others, (2) using the developed model, to investigate the age-related susceptibility of young foals to R. equi, (3) to describe the humoral immune response of foals following experimental challenge and natural infection. The use of a low dose of R. equi to challenge neonatal foals resulted in slow, progressive disease characterized by pulmonary abscessation and spontaneous regression in approximately 50% of the foals. When this low dose was used in 1, 2 or 3-week-old foals, a marked decrease in disease susceptibility was observed as the foals aged. The immunological responses seen after experimental challenge reflect those observed after natural infection. While there was a significant increase of VapA-specific IgG and IgG subclasses over time in both pneumonic and healthy foals, use of VapA-specific IgG(T) showed good sensitivity and specificity when used as a diagnostic tool for R. equi pneumonia. In summary, this study shows that foal susceptibility to R. equi occurs early in life and decreases with age. Whereas all foals developed VapA-specific IgG antibodies post-exposure, IgG(T) appeared to be predictive of infection.

Previous studies have come to contrasting conclusions regarding nutrient limitation of hydrocarbon biodegradation in the Gulf of Mexico, and rate measurements are needed to support oil plume modeling. Thus, this study investigates the rates and controls of biodegradation in seawater and sediments, largely in the deepsea. Sediment and seawater samples were collected on research cruises in the northern Gulf from 2012 to 2014, where the seafloor was impacted by the Deepwater Horizon (DWH) oil spill. Biodegradation was clearly limited by both nitrogen and phosphorus availability in surface waters with significant rates of CO₂ production (100 μmol CO₂ l⁻¹ d⁻¹) only observed in treatments amended with ammonium and phosphate. In deepsea sediments, nutrient amendments resulted in an average of 6 fold higher degradation rates (0.49 μmol CO₂ g sed⁻¹ d⁻¹) compared to unamended controls. Microbial communities responded to oil contamination rapidly in a series of enrichment cultures, and selection was observed for populations of native hydrocarbon-degrading bacteria. Temperature was shown to be a major factor in controlling microbial community composition in the enrichments. At room temperature, community diversity in the enrichments was significantly reduced in the presence of oil, while under 4 °C, the community diversity and evenness remained relatively high upon oil amendment. From the same deepsea sediments, 30 strains of known oil-degrading bacteria (Rhodococcus and Halomonas) were enriched and isolated with hexadecane, phenanthrene, and Macondo oil as the sole carbon and energy source. Detection of these strains in sequence libraries indicates that they may have contributed to the degradation of oil deposited onto the sediments. Rhodococccus strain PC20 degraded approximately one-third of total petroleum hydrocarbons amended into cultures within 7 days. This work elucidates the controls of biodegradation and we provide model pure cultures to further elucidate the ecophysiology of hydrocarbon degradation, focusing on deepsea sediments of the northern Gulf of Mexico.

Thesis (M.Eng.). / Written for the Dept. of Chemical Engineering. Title from title page of PDF (viewed 2009/06/17). Includes bibliographical references.

Universiẗat, Diss., 2000--Stuttgart.

Universiẗat, Diss., 2003--Stuttgart.

Tierärztl. Hochsch., Diss., 2004--Hannover.

Tierärztl. Hochsch., Diss., 2004--Hannover.

All fossil fuels contain varying levels of sulfur compounds which are undesirable because they cause environmental pollution, corrosion, acid rain and lead to health problems. There is strict international legislation for the permissible levels of sulfur compounds in fossil fuels. The aim of this research therefore was the biocatalyst development for biodesulfurisation using two approaches. In the first approach, Rhodococcus erythropolis IGTS8-5 and IGTS8-5G were immobilised in porous coke particles and tested in repeated cycles successfully. Both bacterial strains grew well in the chemically defined medium with glucose as the main carbon and energy source and the model sulfur compound dibenzothiophene (DBT) as the sole sulfur source. 0.8 g of cells was immobilized on 250 g of coke particles without refreshing the medium over 72 h while 1.8 g of cells were immobilised on 250 g of coke when the media was refreshed every 24 hours for 120 h after the initial immobilisation batch of 72h. The latter, were used repeatedly in twelve consequtive batch desulfurisation cycles during which the biodesulfurisation activity progressively decreased from over 95% removal of 100 ppm DBT to around 45% removal. DBT removal is often expressed in terms of 2-hydroxybiphenyl which is the end product of biodesulfurisation. The biodesulfurisation activityof immobilised bacteria was equivalent to 310 umol 2-HBP h-1g-1 dry cell weight during the first hour. Freely suspended cells on the other hand exhibited biodesulfurisation activity equivalent to 91 umol 2-HBP h-1g-1 dry cell weight. Unfortunately, after the first 24 h, the activity of the immobilised cells decreased to 12 umol 2-HBP h-1g-1 dry cell weight. Use of plant cell cultures for biodesulfurisation is the other novel aspect of this work. Armoracia rusticana (horse radish) cell culture was chosen as the novel biocatalyst since this plant is a well known source of peroxidase enzyme which is involved in the biodesulfurisation metabolism according to the literature on bacterial biodesulfurisation. Arabidospsis thaliana (thale cress) was also used since its genome is completely sequenced and it is a model organism in genomics studies. Our results indicate that cell suspensions of both plants did show biodesulfurisation activity by reducing the level of sulfur compounds, mainly DBT and other three derivatives from both aqueous and oil phase. When compared to the bacteria, in terms of DBT consumption, the activity of A. rusticana was calculated as 55 umol DBT h-1 g-1 DCW and 65 umol DBT h-1 g-1 DCW for A. thaliana while in bacteria it was 91 umol DBT h-1 g-1 DCW for IGTS8-5 and 73 umol DBT h-1 g-1 DCW for IGTS8-5G. Transcriptomics analysis of the plant cell cultures after exposure to the DBT when compared to control cultures showed alterations in gene expression levels several of which were related to sulfur metabolism and transmembrane transporters of sulfate.

Made available in DSpace on 2014-11-10T11:09:55Z (GMT). No. of bitstreams: 0 Previous issue date: 2013-07-25Bitstream added on 2014-11-10T11:57:43Z : No. of bitstreams: 1 000741914_20151231.pdf: 202931 bytes, checksum: b09a175d62ec19f75595646ea61ffda5 (MD5) Bitstreams deleted on 2016-01-04T10:26:18Z: 000741914_20151231.pdf,. Added 1 bitstream(s) on 2016-01-04T10:28:14Z : No. of bitstreams: 1 000741914.pdf: 1231278 bytes, checksum: 31828ab93cfccd06f552bc041efb2c26 (MD5) / A linfadenite infecciosa em suínos representa uma das afecções mais preocupantes na criação de suínos em todo mundo, causada por patógenos de origem bacteriana, geralmente diagnosticada na linha de abate. Acarreta prejuízos econômicos com a condenação total ou parcial das carcaças, bem como reflexos em saúde pública, devido ao potencial zoonótico dos agentes causais. O presente estudo investigou a ocorrência e as principais espécies do gênero Mycobacterium, assim como marcadores de virulência plasmidial em linhagens de Rhodococcus equi (R. equi) isoladas de linfonodos e das fezes de suínos de abatedouros do interior do estado de São Paulo, com e sem linfadenite. Foram examinados 150 linfonodos (50 mesentéricos, 50 mediastínicos e 50 submandibulares) com lesões, 150linfonodos (50 mesentéricos, 50 mediastínicos e 50 submandibulares) sem lesões aparentes e 150 fezes de suínos, provenientes de animais destinados ao abate, em dois frigoríficos do interior do estado de São Paulo. As amostras de linfonodos e fezes foram submetidas ao cultivo microbiológico simultaneamente nos meios de ágar acrescido de sangue bovino (5%) desfibrinado, e meios seletivos de CAZ-NB, TCP e TVP para R. equi, e Stonebrink–Lesslie e Lowenstein-Jensen para micobactérias. As colônias sugestivas de R. equi e positivas no teste de CAMP, foram enviadas ao Japão para detecção de linhagens VapA ou VapB, associadas a virulência. As linhagens sugestivas no cultivo microbiano para o gênero Mycobacterium foram submetidas a caracterização de espécies por PCR pela técnica de PRA. Foram identificados nos linfonodos de suínos com lesões 48 (32,0%) linhagens de Mycobacterium spp.e 6 (4,0%) Rhodococcus equi. Nos linfonodos de suínos sem lesões foram identificados 11 (7,3%) isolados de Mycobacterium spp.e nenhuma linhagem de R. equi. Nas fezes foram identificadas 40 (26,6%) linhagens de Rhodococcus equi e ... / The infectious lymphadenitis represents one of the most important diseases in pigs worldwide caused by bacterium, usually diagnosed on the slaughterhouses.The disease leads to economic losses due to total or partial condemnation of carcasses, as well as public health concern due to the zoonotic potential of microorganisms. The present study investigated the occurrence and the main species of the genus Mycobacterium as well as virulence markers of plasmid in Rhodococcus equi (R. equi) strains isolated from lymph nodes and feces from pigs of slaughterhouses in the state of São Paulo, with and without lymphadenitis. Were sampled 150 lymph nodes (50 mesenteric, 50 mediastinal and 50 submandibular) with lesions, 150 lymph nodes (50 mesenteric, 50 mediastinal and 50 submandibular) without visible lesions, and 150 feces from pigs of slaughterhouses of state of São Paulo, Brazil. The lymph nodes samples and feces were subjected to microbiological culture simultaneously indefibrinated bovine blood agar (5%), selective media of CAZ-NB, TCP, TVP for R. equi, and Stonebrink-Lesslie, and Lowenstein-Jensen for mycobacteria . The suggestive colonies of R. equi and positive to CAMP test were sent to Japan for evaluation of plasmid profile (VapA or VapB). The suggestive of Mycobacterium sp. were subjected to polymerase chain reaction (PCR) – based species identification using restriction enzyme pattern analysis (PRA). Among lymph nodes of pigs with lesions, 48 (32.0%) Mycobacterium spp. and 6 (4.0%) R. equi strains were identified. In the lymph nodes of pigs without lesions were identified 11 (7.3%) Mycobacterium spp. and none R. equi strain. From the fecal samples, 40 (26.6%) R. equi and 2 (1.3%) Mycobacterium spp. isolates were identified. From 48 Mycobcterium isolates from pigs with lesions, 37 (77.0%) were identified by PRA as M. avium type 1, and 11 (23.0%) M. avium type 2. Among limph nodes with lesions wer ...