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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

The development of a diagnostic assay for nepoviruses in grapevine

Frazenburg, Lolita 12 1900 (has links)
Thesis (MSc)--Stellenbosch University, 2015. / ENGLISH ABSTRACT: The nepoviruses are a group of nematode-transmitted plant viruses that are distributed worldwide and infect a wide range of plant species, including grapevine. Most of the nepoviruses are foreign to South Africa and to date, only Grapevine fanleaf virus (GFLV) is present. The Department of Agriculture, Forestry and Fisheries (DAFF), as the official National Plant Protection Organisation (NPPO) of South Africa, is committed to prevent the importation and spread of plant pathogens by administering the Agricultural Pests Act, 1983 (Act No. 36 of 1983). Effective measures are implemented by which the introduction of agricultural pests may be prohibited to safeguard the agricultural environment. One of the core functions of DAFF is to render a routine plant health diagnostic service for imported plants and plant products to prevent exotic pathogens from entering the country. The objective of this study was to develop a diagnostic assay for the detection of nepoviruses in grapevine. The project aimed to produce antibodies by recombinant DNA technology against bacterially expressed viral coat protein of a specific nepovirus [Tomato ringspot virus (ToRSV)] and subsequently develop a DAS-ELISA (Double Antibody Sandwich Enzyme-linked Immunosorbent) assay for the detection of the virus. The coat protein (CP) was successfully isolated from imported ToRSV-infected grapevine material. Two expression systems were utilised for expression of the ToRSV-CP, the GST gene fusion system and an Agrobacterium-mediated expression system. The GST gene fusion system was unsuccessful as insufficient soluble protein expression prevented the production of antibodies and thus the development of the DAS-ELISA assay. Tissue print immunoassay (TPIA) initially showed positive results for transient expression of the fusion protein in tobacco plants, but further confirmation proved to be inconclusive. The project also aimed to develop a real-time PCR assay for the specific detection and relative quantification of GFLV, based on a conserved region of the RNA-2 genome. A partial GFLV-RNA-2 from a South African isolate of grapevine was sequenced and used for the design of specific primers. The quantitative real-time PCR assay based on SYBR green technology proved to be sensitive in detecting levels as low as 0.11ng/reaction in infected plants, making it a highly effective diagnostic tool for the detection of GFLV. / AFRIKAANSE OPSOMMING: Die nepovirusse is 'n groep van nematode-oordraagbare plant virusse wat wêreldwyd versprei word en 'n wye verskeidenheid van plantspesies infekteer, insluitend wingerd. Die meeste van die nepovirusse is uitheems aan Suid-Afrika en tot op datum is net Wingerd netelblaar virus (GFLV) teenwoordig. Die Departement van Landbou, Bosbou en Visserye (DAFF), as die amptelike Nasionale Plant Beskermings Organisasie (NPBO) van Suid-Afrika, is daartoe verbind om die invoer en verspreiding van plantpatogene te voorkom deur administrasie van die Wet op Landbouplae, 1983 (Wet No. 36 van 1983). Doeltreffende maatreëls word geïmplementeer waardeur die invoer van landbouplae verbied word om sodoende die landbou-omgewing te beskerm. Een van die kernfunksies van DAFF is om 'n roetine plant gesondheid diagnostiese diens vir ingevoerde plante en plantprodukte te lewer om te verhoed dat eksotiese patogene die land binnedring. Die doel van hierdie studie was om 'n diagnostiese toets vir die opsporing van nepovirusse in wingerd te ontwikkel. Die projek was daarop gemik om antiliggame te vervaardig deur rekombinante DNA-tegnologie teen bakterieël-uitgedrukte virale mantelproteïen van 'n spesifieke nepovirus [Tomato ringspot virus (ToRSV)] en vervolgens ‘n DASELISA (Double Antibody Sandwich Enzyme-linked Immunosorbent) toets vir die opsporing van die virus te ontwikkel. Die mantelproteïen (CP) is met sukses geïsoleer vanaf ingevoerde ToRSV-besmette wingerdmateriaal. Twee uitdrukking stelsels is gebruik vir uitdrukking van die ToRSV-CP, die “GST gene fusion” stelsel en 'n Agrobacterium-bemiddelde uitdrukking stelsel. Die “GST gene fusion” stelsel was egter onsuksesvol aangesien onvoldoende oplosbare proteïen uitdrukking die produksie van antiliggame en dus die ontwikkeling van die DAS-ELISA toets verhoed het. “Tissue print immunoassay” (TPIA) het aanvanklik positiewe resultate getoon vir tydelike uitdrukking van die fusie proteïen in tabakplante, maar verdere bevestiging was onoortuigend. Die projek was ook daarop gemik om ‘n in-tyd polimerase ketting reaksie (PKR) toets vir die spesifieke opsporing en relatiewe kwantifisering van GFLV, gebaseer op 'n gekonserveerde volgorde van die RNA-2 genoom, te ontwikkel. 'n Gedeeltelike GFLV-RNA-2 nukleïensuurvolgorde van 'n Suid-Afrikaanse wingerd isolaat is bepaal en gebruik vir die ontwerp van spesifieke inleiers. Die kwantitatiewe in-tyd PKR toets gebaseer op SYBR groen tegnologie was sensitief genoeg om vlakke van so laag as 0.11ng/reaksie in geïnfekteerde plante op te spoor, wat dit 'n hoogs effektiewe diagnostiese hulpmiddel vir die opsporing van GFLV maak.
12

Aplikace kryoterapie při ozdravování regenerantů Prunus persica (L.) od rostlinných virů

Fronková, Hana January 2017 (has links)
Final thesis was worked out on theme Aplication of cryotherapy as a tool for plant viruses eradication from Prunus persica (L.) Batsch regenerants. Experiment was conducted on Faculty of Agronomy of the Mendel University in Brno and in the Crop Research Institute in Prague-Ruzyně. Literary research describes information about peach cultivation in vitro and plant pathogen eradication by cryotherapy. These information has been used in practical part of the final thesis. Plant material of the ´Redhaven´variety of peach was used for virus eradication by cryotherapy. Cryotherapy was applied on shoot tips. In the end of final thesis shoot tips viability and regeneration were evaluated.
13

Sequenciamento e análise da variabilidade genética de vírus transmitidos por ácaros do gênero Brevipalpus no Brasil / Sequencing and analysis of the genetic variability of viruses transmitted by Brevipalpus mites in Brazil

Jesus, Camila Chabí de 20 January 2016 (has links)
Acredita-se que o Brasil é o centro de diversidade de vírus transmitidos por ácaros do gênero Brevipalpus (VTB). Alguns desses VTB infectam culturas fundamentais para o agronegócio brasileiro como citros e café, além de maracujá e de várias plantas ornamentais. Na última década os genomas de dois deles, Citrus leprosis virus C (CiLV-C) e Coffee ringspot virus (CoRSV) foram sequenciados, mas ainda é escasso o conhecimento sobre a diversidade genética e processos evolutivos envolvidos na população dessas espécies. Neste contexto, o objetivo deste trabalho foi caracterizar molecularmente novas estirpes de CiLV-C e CoRSV que infectam citros e café, respectivamente. E revelar as relações filogenéticas com espécies de VTB conhecidas, assim como avaliar a variabilidade genética da população de CiLVC no Brasil. Para o estudo de CiLV-C, 47 amostras de Citrus sinensis apresentando sintomas típicos da leprose dos citros foram coletadas em diferentes regiões do Brasil no período de 2011-2015. A presença de CiLV-C foi detectada por RT-PCR em todas as amostras coletadas e, posteriormente, foi realizado o sequenciamento de quatro regiões do genoma viral (p29, p15, RI e MP) de cada isolado. As sequências obtidas foram utilizadas no estudo de filogenia e variabilidade da população de CiLV-C no Brasil. Foi demonstrado que a população de CiLV-C apresenta uma variabilidade relativamente baixa; entretanto, foi identificada a existência de duas linhagens dentro da espécie, nomeadas Cor e SJRP. Os genomas completos de CiLV-C SJRP e também do dicorhavirus tentativo CoRSV identificado em Limeira, SP, foram obtidos mediante o sequenciamento de RNA de pequeno tamanho (siRNA). Cada sequência foi validada mediante o sequenciamento de fragmentos gerados por RT-PCR ao longo do genoma. CiLV-C SJRP apresenta cerca de 85% de identidade de nucleotídeo com o membro-tipo do gênero Cilevirus e exibe evidências de recombinação com isolados da linhagem Cor, a prevalente no território brasileiro. Globalmente, o genoma de CoRSV Limeira apresenta mais de 90% de identidade de nucleotídeo com isolado CoRSV Lavras, o que indica que ambos os isolados são membros da mesma espécie tentativa de dichorhavirus. / South America is most likely the center of diversity of Brevipalpus transmitted viruses (BTV). Some of these BTV infect major crops of the Brazilian agribusiness such as citrus and coffee. Passion fruit and several other ornamental plants are affected as well. The genome of two of these viruses, Citrus leprosis virus C (CiLV-C) and Coffee ringspot virus (CoRSV) were sequenced, but the knowledge about several molecular characteristics and processes involved in the evolution of their populations are still scarce. Thus, the objective of this study was to molecularly characterize new isolates of BTV infecting citrus and coffee, reveal the phylogenetic relationships with known species of BTV, and assess the genetic variability of the population of CiLV-C in Brazil. For CiLV-C studies, 47 samples of Citrus sinensis showing typical symptoms of leprosis were collected in different Brazilian regions during 2011-2015. The presence of CiLV-C was detected by RT-PCR in all the collected samples and four regions of the viral genome (p29, p15, IR and MP) of each isample were sequenced. It has been shown that the CiLV-C population has relatively low variability; although the existence of two lineages named Cor and SJRP were identified in this work. The complete genomes of one isolate of the lineage SJRP (CiLV-C SJRP) and that of the tentative dicorhavirus CoRSV found in Limeira, SP, were obtained by small RNA (siRNA) Sequencing. Validation was performed by sequencing fragments generated by RT-PCR using specific primers throughout the genome. CiLV-C SJRP has about 85% nucleotide identity with the genome of the type-member of the Cilevirus genus and shows evidence of recombination with isolates of the lineage Cor, which are prevalent in Brazil. CoRSV isolate Limeira has more than 90% of nucleotide identity with CoRSV Lavras, indicating that both isolates are members of the same tentative species of dichorhavirus.
14

Sequenciamento e análise da variabilidade genética de vírus transmitidos por ácaros do gênero Brevipalpus no Brasil / Sequencing and analysis of the genetic variability of viruses transmitted by Brevipalpus mites in Brazil

Camila Chabí de Jesus 20 January 2016 (has links)
Acredita-se que o Brasil é o centro de diversidade de vírus transmitidos por ácaros do gênero Brevipalpus (VTB). Alguns desses VTB infectam culturas fundamentais para o agronegócio brasileiro como citros e café, além de maracujá e de várias plantas ornamentais. Na última década os genomas de dois deles, Citrus leprosis virus C (CiLV-C) e Coffee ringspot virus (CoRSV) foram sequenciados, mas ainda é escasso o conhecimento sobre a diversidade genética e processos evolutivos envolvidos na população dessas espécies. Neste contexto, o objetivo deste trabalho foi caracterizar molecularmente novas estirpes de CiLV-C e CoRSV que infectam citros e café, respectivamente. E revelar as relações filogenéticas com espécies de VTB conhecidas, assim como avaliar a variabilidade genética da população de CiLVC no Brasil. Para o estudo de CiLV-C, 47 amostras de Citrus sinensis apresentando sintomas típicos da leprose dos citros foram coletadas em diferentes regiões do Brasil no período de 2011-2015. A presença de CiLV-C foi detectada por RT-PCR em todas as amostras coletadas e, posteriormente, foi realizado o sequenciamento de quatro regiões do genoma viral (p29, p15, RI e MP) de cada isolado. As sequências obtidas foram utilizadas no estudo de filogenia e variabilidade da população de CiLV-C no Brasil. Foi demonstrado que a população de CiLV-C apresenta uma variabilidade relativamente baixa; entretanto, foi identificada a existência de duas linhagens dentro da espécie, nomeadas Cor e SJRP. Os genomas completos de CiLV-C SJRP e também do dicorhavirus tentativo CoRSV identificado em Limeira, SP, foram obtidos mediante o sequenciamento de RNA de pequeno tamanho (siRNA). Cada sequência foi validada mediante o sequenciamento de fragmentos gerados por RT-PCR ao longo do genoma. CiLV-C SJRP apresenta cerca de 85% de identidade de nucleotídeo com o membro-tipo do gênero Cilevirus e exibe evidências de recombinação com isolados da linhagem Cor, a prevalente no território brasileiro. Globalmente, o genoma de CoRSV Limeira apresenta mais de 90% de identidade de nucleotídeo com isolado CoRSV Lavras, o que indica que ambos os isolados são membros da mesma espécie tentativa de dichorhavirus. / South America is most likely the center of diversity of Brevipalpus transmitted viruses (BTV). Some of these BTV infect major crops of the Brazilian agribusiness such as citrus and coffee. Passion fruit and several other ornamental plants are affected as well. The genome of two of these viruses, Citrus leprosis virus C (CiLV-C) and Coffee ringspot virus (CoRSV) were sequenced, but the knowledge about several molecular characteristics and processes involved in the evolution of their populations are still scarce. Thus, the objective of this study was to molecularly characterize new isolates of BTV infecting citrus and coffee, reveal the phylogenetic relationships with known species of BTV, and assess the genetic variability of the population of CiLV-C in Brazil. For CiLV-C studies, 47 samples of Citrus sinensis showing typical symptoms of leprosis were collected in different Brazilian regions during 2011-2015. The presence of CiLV-C was detected by RT-PCR in all the collected samples and four regions of the viral genome (p29, p15, IR and MP) of each isample were sequenced. It has been shown that the CiLV-C population has relatively low variability; although the existence of two lineages named Cor and SJRP were identified in this work. The complete genomes of one isolate of the lineage SJRP (CiLV-C SJRP) and that of the tentative dicorhavirus CoRSV found in Limeira, SP, were obtained by small RNA (siRNA) Sequencing. Validation was performed by sequencing fragments generated by RT-PCR using specific primers throughout the genome. CiLV-C SJRP has about 85% nucleotide identity with the genome of the type-member of the Cilevirus genus and shows evidence of recombination with isolates of the lineage Cor, which are prevalent in Brazil. CoRSV isolate Limeira has more than 90% of nucleotide identity with CoRSV Lavras, indicating that both isolates are members of the same tentative species of dichorhavirus.
15

Kvantifikace progrese virové infekce virů RaMV a TuRSV pomocí real-time PCR. / Quantification of infection progression of RaMV and TuRSV using real-time PCR.

KASALOVÁ, Tereza January 2008 (has links)
The relative amount of viral RNA of two comoviruses (RaMV and TuRSV) in different parts of plant during infection was determined. The two viruses were compared according to their ability to spread and multiply in plants.
16

Caracterização de um vírus baciliforme isolado de Solanum violaefolium transmitido pelo ácaro Brevipalpus phoenicis Geijskes (Acari: Tenuipalpidae). / Characterization of a baciliform virus isolated from Solanum violaefolium transmited by Brevipalpus phoenicis geijskes (acari: tenuipalpidae).

Ferreira, Paulo de Tarso de Oliveira 27 July 2005 (has links)
Solano-violeta (Solanum violaefolium) é uma ornamental rasteira usada pra cobrir solos de áreas sombreadas. Um vírus que induz manchas anelares nas folhas, tentativamente designado de mancha anular do S. violaefoliumm (S. violaefolium ringspot vírus - SvRSV), transmitido pelo ácaro Brevipalpus phoenicis foi encontrado nesta planta em jardins de Piracicaba, SP. Trata-se de um vírus baciliforme que se acumula no lúmen do retículo endoplasmático induzindo viroplasma citoplasmático, assemelhando-se a outros vírus do tipo citoplasmático, dos transmitidos por ácaros Brevipalpus (Acari: Tenuipalpidea). Este trabalho relata algumas de suas propriedades biológicas e a caracterização molecular parcial. SvRSV foi ser transmitido mecanicamente e pelo B. phoenicis a várias outras espécies botânicas, sempre causando lesões localizadas. Destas, Datura stramonium mostrou-se a melhor como hospedeira experimental. As propriedades físicas do SvRSV in vitro foram: temperatura de inativação - 40-45 ºC; ponto final de diluição - 10-3-10-4; longevidade in vitro- 12 dias. Posteriormente, observou-se também infestação destas plantas por B. obovatus que em ensaios preliminares transmitiu o SvRSV. Em secções ultrafinas, as partículas do SvRSV mostraram-se ligeiramente mais delgadas que as de outros vírus do tipo citoplasmático, transmitidos por Brevipalpus, e por outro lado formavam eventualmente partículas mais longas, às vezes de ca. 1 µm. Como os demais vírus, do tipo citoplasmático, transmitido por Brevipalpus, induz a formação de um viroplasma denso e vacuolado no citoplasma. Em casos favoráveis foram observadas fases do processo de morfogênese por "brotação" a partir do material do viroplasma. Dada sua labilidade não foi possível conseguir sua purificação apesar das inúmeras tentativas, usando diferentes protocolos. Logrou-se a extração de dsRNA a partir de D. stramonium e a partir dele, obter-se dois fragmentos do genoma viral, identificados como parte da proteína de movimento e da replicase, após seu sequenciamento. Foram produzidos pares de "primer" baseado nestas seqüências que amplificaram especificamente, por RT-PCR, fragmentos de DNA de tamanho esperado, a partir do RNA total extraído de lesões foliares de S. violaefolium e D. stramonium infetados. Sondas baseadas nas seqüências obtidas hibridizaram com ss- e dsRNA de lesões de D. stramonium. Ensaios preliminares de RT-PCR e hibridização não resultaram em reação com alguns outros vírus transmitidos por Brevipalpus, do tipo citoplasmático, inclusive o da leprose dos citros (CiLV-C). / Solanum violaefolium is an ornamental Solanaceae, with prostrate, trailing growth cultivated in shaded areas. Plants exhibiting necrotic ringlike spots on the leaves have been found in several gardens and parks at Piracicaba - SP. The ringspot symptoms on the leaves is caused by a vírus, named S. violaefolium ringspot virus (SvRSV), and is transmisible by mite Brevipalpus phoenicis (Acari: Tenuipalpidae). Short bacilliform particles are present within the cisternae of endoplasmic reticulum (ER) and often electron dense viroplasm is present in the cytoplasm, characterist of the cytoplasmatic type of Brevipalpus-borne virus. The present study reports some of its biological properties and partial molecular caracterization. SvRSV is easily transmitted to many plant species either by viruliferous B. phoenicis or mechanically, always causing local lesions. Datura stramonium was proved to be better as experimental host. Its physical properties in vitro were: inactivation thermal point - 40-45 ºC; final diluition point - 10-3-10-4; longevity in vitro - 12 days. Afterwards, its was observed that S. violaefolium plants were infested by B. obovatus that transmitted SvRSV in preliminary assays. Thin sections revealed that SvRSV particles are slightly thinner and sometimes appear very long. In some favorable sections intermediate steps of viral particle morphogenesis by a budding process of the dense material of the viroplasm toward the lumen of ER could be seen. Due to the fragility of the particles, several attempts to purify the virus have failed, despite many protocols tried. It was possible, however, to extract dsRNA from infected tissue of D. stramonium, and two segments of viral genome, respectively with homology to movement protein (mp) and replicase (rep) of some known viruses were obtained. Primers were designed based in these sequences, which amplified by RT-PCR, fragments of DNA of expected size from total RNA extracts from leaves lesions of infected S. violaefolium and D. stramonium. Probes based on obtained sequences hibridizated with ss- and dsRNA from lesions of S. violaefolium and D. stramonium. Preliminary assays of RT-PCR and hybridization did not result in positive reaction with other cytoplasmatic type of Brevipalpus-borne viruses, including citrus leprosis (CiLVC).
17

Estudos sobre a transmissão do vírus da leprose dos citros e da mancha anular do cafeeiro pelo ácaro Brevipalpus phoenicis (Geijskes) (Acari: Tenuipalpidae)

COSTA, Frank Magno 28 February 2011 (has links)
Submitted by (lucia.rodrigues@ufrpe.br) on 2017-03-17T12:01:04Z No. of bitstreams: 1 Frank Magno da Costa.pdf: 2036897 bytes, checksum: 7498ff1cf68c11e56e2e3d7ce12c8e57 (MD5) / Made available in DSpace on 2017-03-17T12:01:04Z (GMT). No. of bitstreams: 1 Frank Magno da Costa.pdf: 2036897 bytes, checksum: 7498ff1cf68c11e56e2e3d7ce12c8e57 (MD5) Previous issue date: 2011-02-28 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / Brevipalpus mites are vectors of several plant viruses called Brevipalpus transmitted virus –BrTV. Among these, Citrus leprosis virus C (CiLV-C) and Coffee ringspot virus (CoRSV) are important due to the damages caused in Citrus spp. and Coffea spp., respectively. The symptoms occur as localized infection on both leaves and fruits. The interactions between vector and virus are of particular interest both from the scientific perspective and on the development of control measures. However, for these and other BrTV, the mode interactions are still unknown. Preliminary study suggests that CoRSV replicates in the vector tissue, while CiLV-C is mode circulates manner. The aim of this study was to investigate the interactions established between CiLV-C and CoRSV with B. phoenicis. Adult females aviruliferous of B. phoenicis were submitted to acquisition access period of respective virus during five days. After this time they were transferred to hosts (treatments): mungbean (Canavalia ensiformis, non-host of the virus), symptomatic and healthy (citrus and coffee plants) and collected after four different periods of time: 0; 7; 14 and 21 days. The interactions were investigated by real time quantitative polymerase chain reaction (qPCR), transmission electron microscopy (TEM) and transmission assays. The qPCR revealed that there was no increase in viral load over time in all treatments for any of the virus in question. The TEM, it was not possible to detect particles of CiLV-C or CoRSV. CiLV-C transmission rate was 83, 75% and 58% for the treatments symptomatic citrus, mungbean and healthy citrus, respectively. The first symptoms of the leprosis were observed after 30±5 days after mites infestation. In the CoRSV transmission assays no symptoms of coffee ringspot were observed during a period of six months. These results suggest that a long incubation period was be necessary before CoRSV transmission by the vector. By the CiLV-C the results indicate that interaction type virus-vector is of the circulative mode. / Ácaros Brevipalpus são vetores de inúmeros vírus, comumente chamados de vírus transmitidos por Brevipalpus- VTB. Dentre esses, o vírus da leprose dos citros (Citrus leprosis virus C, CiLV-C) e o vírus da mancha anular do cafeeiro (Coffee ringspot virus - CoRSV) são importantes devido aos danos que causam em Citrus spp. e Coffea spp., respectivamente. Os sintomas ocorrem de maneira localizada em folhas e frutos. As interações entre os vírus e seus vetores apresentam particular interesse, tanto do ponto de vista científico quanto no desenvolvimento de novas abordagens para o controle das doenças por eles causadas. Entretanto, para esses e outros VTB, as interações são ainda pouco conhecidas. Estudos preliminares sugerem que o CoRSV se replica no interior do ácaro vetor, enquanto o CiLV-C apenas circula. O objetivo deste trabalho foi investigar os tipos de interações estabelecidas entre o CiLV-C e o CoRSV com B. phoenicis. Fêmeas adultas de B. phoenicis avirulíferas foram submetidas a um período de acesso para aquisição dos respectivos vírus durante cinco dias. Após esse tempo foram transferidas para hospedeiros (tratamentos): feijão-de-porco (não hospedeira dos vírus), plantas suscetíveis, sintomáticas e/ou sadias (laranja doce e cafeeiro) e coletadas após quatro diferentes períodos de tempo: 0; 7; 14 e 21 dias. As interações foram investigadas por reação em cadeia da polimerase em tempo real (qPCR), microscopia eletrônica de transmissão (MET) e testes de transmissão. A qPCR revelou que não houve aumento da carga viral ao longo do tempo em nenhum dos tratamentos avaliados para nenhum dos vírus em questão. A MET não detectou partículas de CiLV-C e CoRSV. A taxa de transmissão do CiLV-C foi de 83; 75 e 58% para os tratamentos frutos de laranja sintomáticos, feijão-de-porco e frutos de laranja sadio, respectivamente. Os primeiros sintomas de leprose dos citros foram observados após 30±5 dias após a infestação dos ácaros. Nos testes de transmissão de CoRSV nenhum sintoma da mancha anular foi observado durante um período de seis meses. Estes resultados indicam a necessidade de longo período é necessário antes da transmissão do CoRSV pelo vetor. Para o CiLV-C os resultados indicam que o tipo de interação vírus-vetor é persistente circulativa.
18

Detekce vybraných rostlinných virů mikročipy (microarrays) / Detection of selected plant viruses by microarrays

HRABÁKOVÁ, Lenka January 2013 (has links)
The main aim of this master thesis was the simultaneous detection of four selected plant viruses ? Apple mosaic virus, Plum pox virus, Prunus necrotic ringspot virus and Prune harf virus, by microarrays. The intermediate step in the process of the detection was optimizing of multiplex polymerase chain reaction (PCR).
19

Caracterização de um vírus baciliforme isolado de Solanum violaefolium transmitido pelo ácaro Brevipalpus phoenicis Geijskes (Acari: Tenuipalpidae). / Characterization of a baciliform virus isolated from Solanum violaefolium transmited by Brevipalpus phoenicis geijskes (acari: tenuipalpidae).

Paulo de Tarso de Oliveira Ferreira 27 July 2005 (has links)
Solano-violeta (Solanum violaefolium) é uma ornamental rasteira usada pra cobrir solos de áreas sombreadas. Um vírus que induz manchas anelares nas folhas, tentativamente designado de mancha anular do S. violaefoliumm (S. violaefolium ringspot vírus - SvRSV), transmitido pelo ácaro Brevipalpus phoenicis foi encontrado nesta planta em jardins de Piracicaba, SP. Trata-se de um vírus baciliforme que se acumula no lúmen do retículo endoplasmático induzindo viroplasma citoplasmático, assemelhando-se a outros vírus do tipo citoplasmático, dos transmitidos por ácaros Brevipalpus (Acari: Tenuipalpidea). Este trabalho relata algumas de suas propriedades biológicas e a caracterização molecular parcial. SvRSV foi ser transmitido mecanicamente e pelo B. phoenicis a várias outras espécies botânicas, sempre causando lesões localizadas. Destas, Datura stramonium mostrou-se a melhor como hospedeira experimental. As propriedades físicas do SvRSV in vitro foram: temperatura de inativação - 40-45 ºC; ponto final de diluição - 10-3-10-4; longevidade in vitro- 12 dias. Posteriormente, observou-se também infestação destas plantas por B. obovatus que em ensaios preliminares transmitiu o SvRSV. Em secções ultrafinas, as partículas do SvRSV mostraram-se ligeiramente mais delgadas que as de outros vírus do tipo citoplasmático, transmitidos por Brevipalpus, e por outro lado formavam eventualmente partículas mais longas, às vezes de ca. 1 µm. Como os demais vírus, do tipo citoplasmático, transmitido por Brevipalpus, induz a formação de um viroplasma denso e vacuolado no citoplasma. Em casos favoráveis foram observadas fases do processo de morfogênese por “brotação” a partir do material do viroplasma. Dada sua labilidade não foi possível conseguir sua purificação apesar das inúmeras tentativas, usando diferentes protocolos. Logrou-se a extração de dsRNA a partir de D. stramonium e a partir dele, obter-se dois fragmentos do genoma viral, identificados como parte da proteína de movimento e da replicase, após seu sequenciamento. Foram produzidos pares de “primer” baseado nestas seqüências que amplificaram especificamente, por RT-PCR, fragmentos de DNA de tamanho esperado, a partir do RNA total extraído de lesões foliares de S. violaefolium e D. stramonium infetados. Sondas baseadas nas seqüências obtidas hibridizaram com ss- e dsRNA de lesões de D. stramonium. Ensaios preliminares de RT-PCR e hibridização não resultaram em reação com alguns outros vírus transmitidos por Brevipalpus, do tipo citoplasmático, inclusive o da leprose dos citros (CiLV-C). / Solanum violaefolium is an ornamental Solanaceae, with prostrate, trailing growth cultivated in shaded areas. Plants exhibiting necrotic ringlike spots on the leaves have been found in several gardens and parks at Piracicaba – SP. The ringspot symptoms on the leaves is caused by a vírus, named S. violaefolium ringspot virus (SvRSV), and is transmisible by mite Brevipalpus phoenicis (Acari: Tenuipalpidae). Short bacilliform particles are present within the cisternae of endoplasmic reticulum (ER) and often electron dense viroplasm is present in the cytoplasm, characterist of the cytoplasmatic type of Brevipalpus-borne virus. The present study reports some of its biological properties and partial molecular caracterization. SvRSV is easily transmitted to many plant species either by viruliferous B. phoenicis or mechanically, always causing local lesions. Datura stramonium was proved to be better as experimental host. Its physical properties in vitro were: inactivation thermal point – 40-45 ºC; final diluition point - 10-3-10-4; longevity in vitro – 12 days. Afterwards, its was observed that S. violaefolium plants were infested by B. obovatus that transmitted SvRSV in preliminary assays. Thin sections revealed that SvRSV particles are slightly thinner and sometimes appear very long. In some favorable sections intermediate steps of viral particle morphogenesis by a budding process of the dense material of the viroplasm toward the lumen of ER could be seen. Due to the fragility of the particles, several attempts to purify the virus have failed, despite many protocols tried. It was possible, however, to extract dsRNA from infected tissue of D. stramonium, and two segments of viral genome, respectively with homology to movement protein (mp) and replicase (rep) of some known viruses were obtained. Primers were designed based in these sequences, which amplified by RT-PCR, fragments of DNA of expected size from total RNA extracts from leaves lesions of infected S. violaefolium and D. stramonium. Probes based on obtained sequences hibridizated with ss- and dsRNA from lesions of S. violaefolium and D. stramonium. Preliminary assays of RT-PCR and hybridization did not result in positive reaction with other cytoplasmatic type of Brevipalpus-borne viruses, including citrus leprosis (CiLVC).

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