<div>Vibrational spectroscopic imaging has become an emerging platform for chemical visualization of biomolecules and materials in complex systems. For over a century, both Raman and infrared spectroscopy have demonstrated the capability to recognize molecules of interest by harnessing the characteristic features from molecular fingerprints. With the recent development of hyperspectral vibrational spectroscopy imaging, which records the chemical information without sacrificing the spatial-temporal resolution, numerous discoveries has been achieved in the field of molecular and cellular biology. Despite the ability to provide complimentary chemical information to Raman-based approaches, infrared spectroscopy has not been extensively applied in routine studies due to several fundamental limitations: 1). the poor spatial resolution; 2). inevitable strong water absorption; 3). lack of depth resolution.</div><div>Mid-infrared photothermal (MIP) microscopy overcame all the above mentioned problems and for the first time, enabled depth-resolved in vivo infrared imaging of live cells, microorganisms with submicrometer spatial resolution. The development of epi-detected MIP microscopy further extends its application in pharmaceutical and materials sciences. With the deployment of difference frequency generation and other nonlinear optical techniques, the spectral coverage of the MIP microscopy was significantly enhanced to enable chemical differentiation in complex systems across the broad mid-infrared region. In addition to the efforts to directly improve the performance of MIP microscopy, a novel quantitative phase imaging approach based on polarization wavefront shaping via custom-designed micro-retarder arrays was developed to take advantage of the highly sensitive phase measurement in combination with the photothermal effect. Besides, the extended depth-of-field and multifocus imaging enabled by polarization wavefront shaping could both improve the performance of MIP microscopy for volumetric imaging.</div>

Ce travail est consacré à l’étude de la génération de deuxième harmonique (SHG) dans des guides d’ondes de Nitrure d’éléments III. Un des buts principaux de ce travail, était d’identifier les origines des pertes à la propagation dans les guides d’ondes GaN et de fortement les réduire dans des guides présentant des possibilités d’accord de phase, pour améliorer l’efficacité de la SHG. Nous avons fait un progrès très important dans cette direction et avons fabriqué des guides d’ondes plans de GaN épitaxiés sur des substrats de saphir avec des pertes à la propagation inférieure à 1dB/cm dans le visible. Dans ces guides d’ondes à faibles pertes, il a été possible d’obtenir un processus de SHG efficace en utilisant l’accord de phase modal. Nous avons obtenu 2% de conversion entre une pompe dans le proche infrarouge et un harmonique dans le visible, ce qui correspond à une efficacité de conversion normalisée de 0,15%W-1cm-2. Les pertes à la propagation et l’efficacité de conversion obtenues sont les meilleurs résultats rapportés jusqu'ici pour des guides d’ondes plan en GaN. De plus, nous avons étudié des guides d’ondes de Nitrure d’éléments III épitaxiés sur des substrats de Si, dont la fabrication demande de relever plusieurs défis, mais qui ouvrent des possibilités intéressantes. La première est la possibilité de graver sélectivement les nitrures ou le Si, ce que nous avons utilisé pour développer une plate-forme permettant la fabrication d’objets suspendus comme des micro-disques, des guides d’ondes et des micro-disques couplés à un guide d’ondes. Cette plate-forme a permis la première démonstration de SHG doublement résonante en utilisant un accord de phase modal entre des modes de galerie du micro-disque. Bien que toutes les expériences que nous avons exécutées aient été faites dans une région spectrale limitée, l’étude numérique présentée dans ce manuscrit démontre la grande adaptabilité de cette plate-forme basée sur la possibilité de faire varier la composition des guides d’ondes AlGaN de GaN pur à AlN pur. La deuxième possibilité liée à l’épitaxie de nitrures d’éléments III sur Si, est qu'en la combinant avec des techniques de report, on peut jouer avec des guides nitrures d’éléments III sur SiO2. Nos résultats numériques révèlent le potentiel complet des guides d’ondes d’AlGaN en démontrant qu’en utilisant différentes combinaisons de mode et en jouant sur la composition et la géométrie des guides d’ondes, il est possible d’obtenir un signal de deuxième harmonique dans l’ultra-violet, le visible ou le proche-infrarouges. Ces résultats montrent aussi, que pour améliorer encore l’efficacité de la SHG, on doit fabriquer des guides d’ondes canaux présentant un isolement optique parfait du substrat de Si et une inversion de polarité précisément placée dans le cœur du guide d’ondes. Dans une telle structure on pourrait profiter simultanément du confinement de la puissance, de l’accord de phase modal et d’un recouvrement optimisé des modes en interaction. Dans ce cas, nos calculs montrent que l’efficacité de conversion pourrait atteindre 100%W-1cm-2. Au cours de ce travail nous avons pu tester des guides canaux et des guides présentant une inversion de polarité dans le cœur. La qualité des flancs des guides canaux s’est avérée être tout à fait encourageante, mais leur performance non linéaire sont restées très limitées, principalement à cause de fortes pertes à la propagation dues au couplage avec le substrat absorbant et à la forte rugosité de surface des couches inversées. Les structures utilisant les techniques de report, n'ont pu être testées car elles ont cassé en cour de fabrication. L'obtention de guides optimisés exige de progresser encore pour réaliser des couches de confinement optique plus épaisses et/ou d’adapter la technique de report à ces matériaux. / This work is dedicated to the study of the second harmonic generation (SHG) in III-Nitride waveguides. One of the main goals of this work, was to identify the origins of the propagation losses in GaN waveguides, and to strongly reduce them in waveguides presenting some phase matching possibilities, in order to improve the SHG efficiency. We have made a very important progress in this direction, and fabricated by hetero-epitaxy GaN planar waveguides on sapphire substrates with propagation losses below 1dB/cm in the visible spectral region. These low-loss waveguides were used for the demonstration of an efficient second harmonic generation process using modal phase matching. We obtained 2% of power conversion from the near-infrared to the visible spectral regions with a normalized efficiency of 0.15%W-1cm-2. The obtained propagation losses and conversion efficiency are the best-reported results so far for GaN planar waveguides. In addition, we have studied epitaxial III-nitride waveguides on Si substrates, which are very challenging to fabricate, but opens new interesting opportunities. The first one is the possibility to etch selectively the nitrides or the Si. The selective chemical etching was used to develop a platform allowing the fabrication of suspended objects such as micro-disks, waveguides and micro-disks coupled to a waveguide. This platform has allowed the first demonstration of doubly resonant SHG using phase matching between the whispering gallery modes of a micro-disk. Although all the experiments we performed were done in a limited spectral region, the numerical study presented in this manuscript demonstrates the large adaptability of this platform based on the possibility of varying the composition of AlGaN waveguides from pure GaN to pure AlN. The second opportunity of epitaxial III-nitrides layers on Si is the possibility to combine them with report technologies to obtain III-nitride waveguides on SiO2. Our numerical results reveal the full potential of AlGaN waveguides by demonstrating that using different mode combinations and playing with waveguides composition and geometry, it is possible to obtain a second harmonic signal in the ultraviolet, the visible or the near-infrared spectral regions. These results also demonstrate, that to further improve the SHG efficiency, one has to fabricate ridge waveguides presenting a perfect optical isolation from the Si substrate and a polarity inversion precisely positioned in the core of the waveguide. In these structures one could benefit simultaneously from the power confinement, the modal phase matching and an optimized overlap of the interacting modes. In this case, we calculate that the conversion efficiencies could be as high as 100%W-1cm-2. Both ridge waveguides and polarity inversion were tested in this work. The quality of the ridges was quite encouraging, but their nonlinear performance remained limited mainly because of the high propagation losses due to the coupling with the absorbing substrate and to the roughness of the surface of the epitaxial inverted layers. The structures fabricated using the report technique, haven’t been tested, as they were broken during their fabrication. Getting fully optimized waveguides requires further progresses in realizing thicker optical buffer layers and/or adapting the report technique to these materials.

Diese Arbeit beinhaltet experimentelle und theoretische Untersuchungen der optischen Frequenzverdopplung (second-harmonic generation, kurz SHG) an metallischen Nanopartikeln. Frequenzverdopplung bedeutet, daß ein bei der Frequenz omega angeregtes Nanopartikel Strahlung der Frequenz 2*omega emittiert. Dieser Effekt tritt nicht nur in Materialien mit nichtzentrosymmetrischer Kristallstruktur, sondern auch an der Oberfläche von Metallen auf. Deshalb läßt er sich gut mit plasmonischen Feldüberhöhungen an metallischen Nanoantennen verbinden. Die Frequenzverdopplung wird an verschiedenen Nanostrukturen wie dreieckförmigen, stäbchenförmigen und vor allem kegelförmigen Nanopartikeln experimentell untersucht, welche aufgrund ihrer scharfen Spitzen starke SHG-Signale emittieren. Besonders die Kegel sind interessant: Bei Anregung mit einem fokussierten, radial polarisierten Strahl dominiert je nach Kegelgröße und Umgebungsmedium ein SHG-Signal entweder von der Spitze oder von der Bodenkante des Kegels. Diese an den Kegeln gemessenen Resultate werden durch theoretische Untersuchungen untermauert. In diesen Rechnungen werden die plasmonischen Feldüberhöhungen und die sich daraus ergebende Frequenzverdopplung für einen Kegel mit verschiedenen Parametern modelliert. An einem einzelnen Kegel gewonnene Resultate werden auch mit den Fällen eines kugelförmigen und eines stäbchenförmigen Partikels verglichen. Ein weiterer Gegenstand der theoretischen Untersuchungen ist die Superposition der zweiten Harmonischen von mehreren emittierenden Nanopartikeln zu einem Feldmaximum. Dabei wird eine kreisförmige Anordnung von 8 Nanostäbchen bzw. Nanokegeln von einer radial polarisierten Mode angeregt. Die Superposition der emittierten zweiten Harmonischen ergibt ein Feldmaximum innerhalb der Anordnung der Emitter. Durch eine Verkippung des anregenden Strahls kann dieser Fokus im Raum bewegt werden. Letztere Untersuchung ist insbesondere interessant im Hinblick auf lokalisierte photochemische Reaktionen, die durch das frequenzverdoppelte Licht von Nanopartikeln ausgelöst werden sollen. Mit chemischen Substanzen, die bei omega transparent, bei 2*omega aber photoreaktiv sind, wäre im Nahfeld dieser Nanoantennen eine starke Lokalisierung der Reaktion auf Bereiche kleiner als 100~nm möglich. Anhand von Photolacken und Polymermatrizen mit diesen Eigenschaften wird experimentell untersucht, ob frequenzverdoppeltes Licht überhaupt solche Reaktionen auslösen kann oder ob die photochemische Reaktionen überwiegend durch direkte Zwei-Photonen-Absorption des anregenden Lichts ausgelöst werden. Die Ergebnisse zeigen allerdings, daß die Zwei-Photonen-Absorption dominant ist. Durch die Zwei-Photonen-Absorption im Nahfeld von Partikeln ist aber dennoch eine vergleichbare Lokalisierung der Reaktion möglich.:1. Einführung 1.1 Frequenzverdopplung an Nanopartikeln 1.2 Photochemisches Schreiben auf kleinen Längenskalen 2. Theoretische Grundlagen 2.1 Nichtlineare optische Effffekte zweiter Ordnung 2.2 Frequenzverdopplung in Metallen 2.3 Frequenzverdopplung bei metallischen Nanopartikeln 2.4 Überlagerung der Strahlung mehrerer frequenzverdoppelter Dipole 2.5 Core-Shell-Nanopartikel mit nichtzentrosymmetrischem Kern 3. Experimenteller Aufbau 3.1 Beleuchtung der Proben und Detektionspfad 3.2 Objektiv und Probenhalter 3.3 Realisierung der radial polarisierten Mode 4. Messungen der zweiten Harmonischen an Nanostrukturen 4.1 Einzelne kugel- und stäbchenförmige Goldnanopartikel 4.2 Nanodreiecke (Fischer-Pattern) 4.3 Nanokegel 4.4 Nanostäbchen-Teppiche 4.5 Zusammenfassung 5. Nichtlinear-optisches photochemisches Schreiben auf kleinen Längenskalen 5.1 Photochemische Reaktionen auf der Sub-100nm-Skala 5.2 Erste Versuche an Photolacken 5.3 Photochemisches Schreiben auf azobenzolhaltigen PMMA-Copolymerschichten 5.4 Photochemisches Schreiben auf azosulfonathaltigen PMMA-Copolymerschichten 5.5 Ausblick 6. Zusammenfassung und Ausblick Anhang A. Darstellung der radialen Mode und des z-polarisierten Fokus B. Mehode der multiplen Multipole (MMP) C. Präparation der Proben Literaturverzeichnis Abbildungsverzeichnis Verzeichnis der Tabellen Verwendete Abkürzungen Liste der Veröffffentlichungen Danksagung Erklärung / This work includes experimental and theoretical investigations of second-harmonic generation (SHG) at metallic nanoparticles. SHG means that a nanoparticle that is excited at the frequency omega emits radiation at the frequency 2*omega. SHG does not only occur in materials with noncentrosymmetric structure, but also on metal surfaces. Hence, SHG can be combined well with plasmonic field enhancement at metallic nanoantennae. SHG is investigated experimentally at different nanostructures such as triangle-like, rod-like and especially cone-like nanoparticles. With their sharp tips these structures show a much stronger SHG signal than spherical nanoparticles. Especially the cones are interesting: Excited with a focused radially polarized beam, for different cone sizes and in different surrounding media either the signal from the tip or the signal from the bottom edge dominates. The measurement results from the cones are underpinned by theoretical investigations. In these calculations the plasmonic field enhancements and the resulting SHG are modeled for a cone with different parameters. The single-cone results are also compared with the cases of a spherical or rod-shaped particle. A further subject of the theoretical investigations is the superposition of the SHG radiation from a number of emitting nanoparticles to a field maximum. For that, a circular arrangement of 8 nanorods or nanocones is excited by a radially polarized beam. The superposition of the second-harmonic radiation fields yields a field maximum in the space between the emitters. A tilt of the exciting beam can move this focus in space. The latter item is of special interest concerning localised photochemical reactions induced by the second-harmonic light from nanoparticles. In the near field of these nanoantennae, a strong localisation of the reaction on regions smaller than 100 nm would be possible by using chemical substances being transparent at omega, but photoreactive at 2*omega. With photoresists and polymer matrices, experiments are carried out to investigate whether SHG light can trigger such reactions at all, or if these photochemical reactions are triggered predominantly by direct two-photon absorption of the exciting light. The results show that the two-photon absorption is the dominant process. Yet, through two-photon absorption in the near field of particles, the localisation of the reaction is still similar.:1. Einführung 1.1 Frequenzverdopplung an Nanopartikeln 1.2 Photochemisches Schreiben auf kleinen Längenskalen 2. Theoretische Grundlagen 2.1 Nichtlineare optische Effffekte zweiter Ordnung 2.2 Frequenzverdopplung in Metallen 2.3 Frequenzverdopplung bei metallischen Nanopartikeln 2.4 Überlagerung der Strahlung mehrerer frequenzverdoppelter Dipole 2.5 Core-Shell-Nanopartikel mit nichtzentrosymmetrischem Kern 3. Experimenteller Aufbau 3.1 Beleuchtung der Proben und Detektionspfad 3.2 Objektiv und Probenhalter 3.3 Realisierung der radial polarisierten Mode 4. Messungen der zweiten Harmonischen an Nanostrukturen 4.1 Einzelne kugel- und stäbchenförmige Goldnanopartikel 4.2 Nanodreiecke (Fischer-Pattern) 4.3 Nanokegel 4.4 Nanostäbchen-Teppiche 4.5 Zusammenfassung 5. Nichtlinear-optisches photochemisches Schreiben auf kleinen Längenskalen 5.1 Photochemische Reaktionen auf der Sub-100nm-Skala 5.2 Erste Versuche an Photolacken 5.3 Photochemisches Schreiben auf azobenzolhaltigen PMMA-Copolymerschichten 5.4 Photochemisches Schreiben auf azosulfonathaltigen PMMA-Copolymerschichten 5.5 Ausblick 6. Zusammenfassung und Ausblick Anhang A. Darstellung der radialen Mode und des z-polarisierten Fokus B. Mehode der multiplen Multipole (MMP) C. Präparation der Proben Literaturverzeichnis Abbildungsverzeichnis Verzeichnis der Tabellen Verwendete Abkürzungen Liste der Veröffffentlichungen Danksagung Erklärung

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Diode lasers are a convenient and economical source of near-infrared radiation, which may usefully be applied to a host of different sensitive detection methods; this thesis presents novel extensions of these methods, making use of the favourable characteristics of this type of light source. The first part of this thesis details the development of an optical feedback cavity-enhanced absorption spectroscopy (OF-CEAS) apparatus, including the development of the optical system, the sample handling, and the electronics for feedback phase control. A preliminary demonstration of the system is reported, presenting the detection of atmospheric water absorptions close to 1596 nm. Optimisation and application of the OF-CEAS spectrometer are then demonstrated, after which the spectrometer is applied to the sensitive detection of carbon dioxide absorptions suitable as a diagnostic aid in identifying Heliobacter pylori infection. A time-normalised α-min value of 5.8 × 10⁻⁹ cm⁻¹s^1/2 was measured for these spectra. Further optimisation of the system leads to an ultimate detection sensitivity of 1.42 × 10⁻⁹ cm⁻¹s^1/2, measured on absorption transitions in acetylene close to 1532 nm. In order further to characterise the performance of the OF-CEAS system, analogous experiments are presented using the OF-CEAS setup and a standard diode-laser cavity-enhanced absorption spectroscopy (CEAS) apparatus. Detection is carried out on the P(6) line of the ν₁ + ν₃ vibrational band of the mixed isotopologue of acetylene, ¹²-C¹³-CH₂. Direct comparison is made between the sensitivities of the two methods, and in light of this the suitability of each technique for detection in different environments is considered. The well-characterised and consistent frequency scale which is inherent to the OF-CEAS technique is then applied to a line shape analysis for the presented absorption spectra. Pressure-broadening coefficients are determined for selected absorptions in the ν₁ + ν₃ band of acetylene. In spite of the low resolution associated with this technique, this accurate frequency scaling allows observation of subtle line shape effects such as Dicke collisional narrowing using the data presented in Chapter 3 for the R(60) line in the 3ν₁ + ν₃ vibrational band of CO₂. These effects are quantified through use of a Galatry fit to each absorption spectrum. The statistical significance associated with the use of such a model, and the physical meaning of the results, are examined and discussed. An alternative strategy for increasing the sensitivity of a diode-laser-based gas monitoring technique lies in moving detection to the mid-infrared region, where the absorption cross-sections are generally larger. With this motivation, difference frequency generation is presented, to produce radiation close to 3.5 µm which is then applied to a series of different enhanced spectroscopy techniques. The optimal sensitivity, of 32 ppb NO2 at 45 Torr total sample pressure, was achieved using wavelength modulation spectroscopy. The different techniques are compared and possible improvements to them are put forward. Finally, proof-of-principle work is presented seeking to combine the enhanced circulating power associated with the optical-feedback-locked techniques and non-linear optical techniques to move detection to a more favourable spectral region. Light close to 429 nm is generated by second harmonic generation in a crystal of potassium niobate, with resonance-enhancement afforded by a feedback V-cavity of the sort employed in OF-CEAS. The potential of such a system for diode-laser-based generation of blue and ultraviolet light is demonstrated and discussed, along with improvements that might be implemented to increase the efficiency of the system.

Ce travail contribue à l’évaluation de la technique de génération de seconde harmonique induite par un champ électrique quasi statique, ou technique EFISHG, appliquée au domaine de la microélectronique. Une description du principe de la technique EFISHG, basé sur l’optique non linéaire, permet d’appréhender l’origine physique de cette méthode. Un état de l’art a permis d’identifier deux champs d’applications liés à la microélectronique : l’analyse de défaillance, via la mesure en temps de réelle des variations de champs électriques internes dans les circuits intégrés, et la fiabilité par l’étude du piégeage de charges à l’interface Si/SiO2 et de la dégradation dite de « Negative Bias Temperature Instability » ou NBTI. Ce manuscrit présente les différentes étapes qui ont permis l’élaboration d’un banc de test en vue de l’évaluation de l’applicabilité de la technique EFISHG à ces problématiques. Les résultats expérimentaux obtenus avec ce montage ont permis de mettre en avant les possibilités qu’offre la technique EFISHG à caractériser et à accélérer le vieillissement NBTI. / This work concerns the elaboration of an industrial method for Single Event Effect (SEE) sensitivity testing on integrated circuits. The concerned SEEs are those produced by heavy ions and are mainly Single Event Upset (SEU) and Single Event Latchup (SEL). The original test approach chosen in this study relies on the use of infrared laser pulses striking the backside of the tested device. Laser pulse and heavy ion interaction with semiconductor materials are described and a presentation of the particle accelerator test and some former laser test methods is also given. Advantages and drawbacks of those two techniques are discussed. The developed experimental setup uses a near infrared fiber coupled Neodyme/YAG pulsed laser. Its different elements are described. Using this tool to characterise the SEU sensitivity of several modern SRAMs has allowed to define a test methodology. Its efficiency is discussed and illustrated by different experimental results.

Le but de ce travail de thèse est de contrôler via un traitement de polarisation les propriétés physico-chimiques de surface des verres. Pour cela, l'implémentation d'une charge d'espace au sein de différents verres silicates et borosilicates a été caractérisée. Ces études comparatives ont montré que la déplétion des cations de l’anode vers la cathode induit l’apparition d’un champ électrique et des modifications structurales localisées. De plus, nous avons démontré que la formation d’un plasma entre l’anode et le verre pouvait être à l’origine de phénomènes d'échanges ioniques conduisant notamment à la formation d’entités azotées NO2/N2O4 piégées dans le verre. Par la suite, une étude des propriétés physico-chimiques des surfaces polarisées a été conduite. Les résultats préliminaires obtenus concernent l'influence de la charge d'espace sur (i) la mouillabilité, (ii) la chimie de surface et (iii) les réponses optiques de molécules adsorbées. / The purpose of this work is to control physicochemical properties of glasses surfaces using a thermal polarization treatment. For this, the implementation of a space charge layer has been characterized for various silicates and borosilicates glasses. These comparative studies have shown that cations depletion from anode toward cathode induces both an electric field and structural local changes. To go further, we demonstrated that there is a plasma formation between anode and glass surfaces which could be the cause of ionic exchange phenomena leading to the formation of nitrogen NO2/N2O4 entities entrapped inside glass network. Subsequently, physicochemical properties studies of polarized surfaces were performed. Preliminary results concerning the space charge influence on (i) surface wettability, (ii) surface chemistry and (iii) optical responses of adsorbed molecules on poled glass surface have been obtained.

Saccharides, a class of organic materials, are potential candidates for nonlinear optical applications. Ascorbic acid is a sugar acid and is classified as a monosaccharide. The molecule of ascorbic acid has two chiral centers and, therefore, four stereoisomers. Among them, two are naturally occurring compounds; L-ascorbic acid and D-isoascorbic acid. From these two acids various salts and other derivatives could be synthesized. In this thesis, four compounds of the ascorbic acid family were selected for detailed study based on their nonlinearity, chemical and physical stability and their crystallization characteristics. The thesis is organized into seven chapters. The first chapter covers the theoretical background of nonlinear optics, especially, second harmonic generation. Second chapter details the experimental techniques and methodology adopted. Chapter 3 discusses the crystal structure, growth, physical and nonlinear optical properties of Lithium Disoascorbate monohydrate (LDAM). Detailed analysis of refractive index measurements employing Brewsters angle method and determination of phase matching curves, effective nonlinear coefficient, walk off angle etc are given. In Chapter 4, investigations on Sodium D-isoascorbate monohydrate (NDAM) are presented. Detailed characterization of the crystals including thermal, optical, dielectric properties are carried out. Analyses of dielectric dispersion based on Cole-Cole equation are discussed. Comprehensive studies on laser damage of the crystals are discussed. Chapter 5 discusses the nonlinear optical properties of the monoclinic D-isoascorbic acid (DIA). Chapter 6 presents studies on the triclinic Lithium L-ascorbate dihydrate (LLA) crystals. The crystals exhibit intense non-collinear second harmonic rings as they possesses large birefringence coupled with high second order nonlinear coefficients. The SHG conversion efficiency of these crystals is 15 times that of KDP. In the final chapter, a comprehensive summary of the work carried out is presented along with scope for further investigations.

The thesis entitled "Phase Behaviour in Crystalline Solids: Exploring the Structure Guiding Factors via Polymorphism, Phase Transitions and Charge Density Studies" consists of five chapters divided into two parts. A basic introductory section describes the topics relevant to the work and the methods and techniques utilized. Part A contains two chapters that discuss the structural aspects related to polymorphism, solvatomorphism, conformational preferences and phase transitions exhibited by active pharmaceutical ingredients (APIs). It also discusses the structure-property correlations in API crystal forms and the possible utility of second harmonic generation (SHG) for their bulk characterization. Part B has three chapters that discuss experimental and theoretical charge density analyses of intra-and intermolecular interactions that play structure guiding roles in some of the APIs discussed in Part A. The main focus of the present work is to characterize the interaction patterns devoid of strong classical hydrogen bonds. The case studies include multifurcated C - H …O hydrogen bonds, the “carbon bonding” and chalcogen interactions involving Se and S atoms. In addition to charge density studies, in situcryocrystallography and molecular complexation experiments have been employed to examine structural consequences of chalcogen bonding. Further, Appendices 1 and 2 describe phase transition studies on the inorganic mineral kröhnkite and its high temperature phase transitions leading to novel inorganic structural types. Part A: Polymorphism and phase behaviour in Active Pharmaceutical Ingredients (APIs) Chapter 1 discusses case studies of polymorphism, supramolecular preference sand phase transitions exhibited by active pharmaceutical ingredients (APIs). Section 1.1 deals with the polymorphism of an anti-oxidant drug candidate ebselen and its hydroxyl derivative. The potential of organoselenium compounds to form a Se…O chalcogen bonded supramolecular recognition unit (synthon) has been established in these polymorphs and its generality is substantiated with the help of a Cambridge Structural Database (CSD) analysis. Section 1.2 demonstrates the utility of the ‘chalcogen bonded supramolecularsynthon’ in generating molecular complexes of APIs. A series of salts and co-crystals of the amyotrophic lateral sclerosis drug Riluzole have been synthesized in order to evaluate the structure directing role of S…O chalcogen bonded synthon in their crystal structures. Section 1.3adescribes the generation of polymorphs and solvatomorphs of the antidepressant drug candidate fenobamand associated phase transitions. The tautomeric preference in this molecule has been rationalized from the crystal structure analysis and abinitioenergy calculations. Further, section 1.3b utilizes chemical derivatization as a means to experimentally simulate thetautomeric preference and molecular conformations in several derivatives of fenobam and thiofenobam. Section 1.4 describes the issue of solvatomorphism and the generation of the fifth solvatomorph of gallic acid, its structural complexity and temperature induced phase transitions. The ability of solvent water molecules to drive structural diversity, by forming ‘hydration synthons’,is demonstrated in this case. Chapter 2 presents a novel methodology for the detection of polymorphic impurities in APIs based on second harmonic generation (SHG).The SHG based method has been employed to polymorphic mixtures of fenobam, hydrochlorothiazide, pyrazinamide, tolbutamide, curcumin, febuxostat and nimesulide.The conventional methods such as powder X-ray diffraction (profile fitting analysis), FT-IR, Raman spectroscopy and thermal analysesto detect the presence of polymorphic impuritiesin bulk API samples are employed on the mixtures of these API samples and the impurity detection limits are compared with the proposed SHG methodology. The APIs used in these case studies were screened for their SHG efficiency using quantum chemical calculations of hyperpolarizability and HOMO-LUMO charge redistribution behaviour. Further, a correlation with the crystal symmetry, relative packing arrangement of molecules and the observed SHG efficiency have been discussed in of some of these cases. Part B: Exploring the nature and structural consequences of nonbonding interactions in molecular crystals Chapter 3 discusses the electron density features of quasi-trifurcated CH…Cl/CH…O interaction motifs leading to ‘carbon bonding’ and a trifurcated CH…O hydrogen bond motif. Section 3.1 describes the experimental and theoretical charge density analyses of quasi-trifurcated CH…Cl and CH…O motifsand investigates the existence of “carbon bonding” in solid state. The experimental charge density evidence for “carbon bonding” have been analyzed in cases of fenobam and dimethylamine: 4-hydroxybenzoic acid complex. The existence of this unconventional interaction, which roughly mimics the transition state geometry of SN2 (bimolecular nucleophilic substitution) reaction, is further established by a CSD analysis. Section 3.2 describes the experimental and theoretical charge density analyses of ferulic acid and compares the topological features associated with a trifurcated CH…O hydrogen bond motif, with corresponding strong classical OH…O hydrogen bonds. The study demonstrates the “Gulliver effect” of weak interactions in charge density terms. Charge density based interaction energy calculations via EPMM and EML methods have been utilized in this context to evaluate the relative strength of such interactions. Chapter 4 discusses the charge density features of intermolecular chalcogen bonding interactions involving selenium and sulphur atoms.Section 4.1 describes the experimental and theoretical charge density analyses of ebselen and its hydroxyl derivative. The charge density characterization of the conserved chalcogen bond synthon (discussed in chapter 1, section 1.1) has been carried out and electronic nature and geometric dependence of Se…O interactions have been explored. The mechanism of drug action of ebselen has been correlated with the experimentally observed charge density distribution around the intramolecular SeC and SeN bonds. Section 4.2 explores the homochalcogen interactions such as S…SandSe…Se in phenol analogues. In situ cryocrystallographic studies on thiophenol, selenophenol and their solid solutions are described. Veggard’s law-like behaviour observed in these solid solutions have been rationalized and the S…S and Se…Sehomochalcogen interactions have been evaluated in these liquid systems which are devoid of any other packing forces such as strong hydrogen bonds. Chapter 5 discusses the conformation locking potential of intramolecular S…O chalcogen bonding in sulfadrugs. Section 5.1 discusses conformation locking in the antibioticdrugsulfamethizole. A two pronged approach has been adopted in the study; a) generation of cocrystals and salts of sulfamethizole for the ‘experimental simulation’ of the molecular conformation, b) evaluation of charge density distribution around the intramolecular S…O interaction region in sulfamethizole. Section 5.2 describes the effect of ‘simple hybridized orbital geometry’ in the formation of intramolecular S…O chalcogen bonding. The experimental charge density analysis of the carbonic anhydrase inhibitor drug acetazolamide has been carried out and the two different intramolecular S…O geometries have been compared in terms of the charge density topology. The analysis highlights the advantage of “orbital geometry” consideration over the conventional distance-angle criteria in assessing nonbonded interactions.