Metabolic energy is most efficiently stored as triacylglycerol (TAG). This neutral lipid accumulates mainly within adipose tissues, but it can be stored and used in all types of cells. Within cells it is packed in organelles called lipid droplets (LDs). They consist of a core of neutral lipids like TAG and cholesterol esters, which is surrounded by a phospholipid monolayer that mainly consists of phosphatidylcholine (PC). Attached to or inserted into this monolayer are various proteins, mainly LD specific structural proteins or lipid metabolic enzymes. Though excess uptake of nutrition leads to lipid accumulation in all kinds of body tissues, which is accompanied by the augmentation of LDs and results in cellular dysfunction and the development of metabolic diseases, relatively little is known about the biogenesis and growth of LDs. This thesis focuses on diacylglycerol acyltransferase 2 (DGAT2), an enzyme of the TAG biosynthetic pathway, and on lyso-phosphatidylcholine acyltransferases 1 and 2 (LPCAT1 and LPCAT2), both enzymes of one of the PC biosynthetic pathways called Lands cycle. The data presented in this thesis show that these enzymes can localize to LDs and that they actively synthesize TAG and PC at the surface of LDs. While the LPCATs reside on LDs independent from the nutrition status of the cell, DGAT2 accumulates on LDs upon excess availability of oleic acid. DGAT2, LPCAT1 and LPCAT2 differ in their structure from other iso-enzymes that catalyze the same reactions. This thesis shows that they exhibit a monotopic conformation and that they contain a hydrophobic stretch that presumably forms a hairpin. This topology enables them to localize to both a phospholipid bilayer like the membrane of the endoplasmic reticulum and to a phospholipid monolayer like the surface of LDs. The different biophysical properties of the structures of iso-enzymes might be responsible for their subcellular localization and the formation of distinct TAG or PC pools that are destined for different purposes. This would explain, why the iso-enzymes are often not able to replace each other. Knock-down and overexpression experiments performed in this thesis show that the activity of LPCAT1, LPCAT2 and DGAT2 influence the packaging of lipids within LDs. Knock-down of LPCAT1 and LPCAT2 leads to an increase in LD size without concomitant increase in the amount of TAG. Combined with the finding that the profile of the PC species of the LD surface reflects the substrate preferences of LPCAT1 and LPCAT2, the results suggest that these enzymes are responsible for the formation of the LD surface. Therefore, the increase in LD size upon LPCAT1 and LPCAT2 knock-down results from an adjustment of the surface-to-volume ratio in response to reduced availability of surface lipids. The connection between LPCATs and LD size was corroborated in the model organism Drosophila melanogaster. Three different knockout fly strains of the Drosophila homologue of LPCAT1 and LPCAT2, CG32699, exhibit enlarged LDs in the fat body of the L3 larvae. Furthermore, the data presented suggest that the morphology of LDs is important for the secretion of stored lipids. The reduction of LPCAT1 in liver cells leads to a reduction in lipoprotein particle release. This was shown by measuring the amount of released apolipoproteinB with two different methods, by measuring the release of lipids and by quantification of the amount of released hepatitis C virus, which is known to rely on LD interaction for replication and on lipoprotein particles for cellular release. DGAT2 is recruited to LDs upon excess availability of oleic acid and its overexpression leads to the formation of many, but relatively small LDs. Here, it is shown that DGAT2 interacts with acyl-CoA synthetase ligase 1 (ACSL1), an enzyme that catalyzes the activation of free fatty acids with Coenzyme A. This interaction does not influence the stability of DGAT2 nor does it seem to affect lipid synthesis. Nevertheless, it shows an influence on lipid packaging in LDs. While overexpression of DGAT2 results in the appearance of smaller LDs, overexpression of ACSL1 leads to an increase in LD size. Coexpression of ACSL1 and DGAT2 reverses the phenotypes obtained by single overexpression and normalizes the mean LD diameter to values observed at normal conditions. In conclusion, this thesis shows that LDs are able to synthesize the components of their core and their surface, which underlines their independent function in metabolism. Additionally, the results show that LDs can grow by local synthesis and that the responsible enzymes exhibit a monotopic membrane topology, which might be crucial for LD localization. Furthermore, the obtained data suggest that the localization and the ratio between different enzyme activities influence the packaging of lipids and affects lipid secretion and therefore impact the whole body lipid metabolism.

Gonadotropin-releasing hormone (GnRH) and its superactive analogues are currently being used in the treatment of a number of endocrine disorders, such as endometriosis, precocious puberty, infertility and prostatic cancer. Selection of these analogues for clinical use have been previously based on their activities in animal models. This thesis has therefore investigated the binding characteristics of the human GnRH receptor, in comparison to those of the rat receptor, as well as the activities of a number of GnRH analogues for stimulating luteinising hormone (LH) and follicle stimulating hormone (FSH) secretion from cultured human pituitary cells. The establishment of a human pituitary bioassay system has further made possible the investigation of the direct regulatory roles of GnRH and other neuropeptides in man. To date, such studies in man have been performed in vivo and are thus complicated by the simultaneous interactions of numerous modulators.

Host-adapted bacteria are pathogens that, through evolutionary time and host-adaptive events, acquired the ability to manipulate hosts into assisting their own reproduction and spread. Through these host-adaptive events, free-living pathogens may be rendered unable to reproduce without their host, which is an irreversible step in evolution. Francisellaceae and Legionellales, two orders of Gammaproteobacteria, are cases where host-adaptation has lead to an intracellular lifestyle. Both orders use secretion systems, in combination with effector proteins, to invade and control their hosts. A current view is that Francisellaceae and Legionellales went through host-adaptive events at two separate time points. However, F. hongkongensis, a member of Francisellaceae shares the same secretion system as the order of Legionellales. Additionally, two host-adapted Gammaproteobacteria, Piscirickettsia spp. and Berkiella spp., swaps phylogenetic positions between Legionellales and Francisellaceae depending on methods applied - indicating shared features of Francisellaceae and Legionellales. In this study, we set up a workflow to screen public metagenomic data for candidate host-adaptive bacteria. Using this data, we attempted to assert the phylogenetic position and possibly resolve evolutionary events that occurred in Legionellales, F. hongkongensis, Francisellaceae, Piscirickettsia spp. and Berkiella spp. We successfully acquired 23 candidate host-adapted MAGs by (i) scanning for genes, among reads before assembly, using PhyloMagnet, and (ii) screening for complete secretion systems with MacSyFinder. The phylogenetic results turned out indecisive in the placement ofBerkiella spp. and Piscirickettsia. However, results found in this study indicate that, contrary to previous beliefs, it is possible that it was one intracellularization event of a common ancestor that gave rise to the intracellular lifestyle of Francisellaceae and Legionellales.

Im Zebrafisch (Danio rerio) ist ein Protein identifiziert worden, das eine wichtige Rolle in der Entwicklung der Brustflossen zu besitzen scheint und als Fibin, dem englischen Akronym für Fin bud initiation factor (Flossenknospeninitiationsfaktor), bezeichnet wurde. Es zeigt keine Verwandtschaft zu anderen bekannten Proteinen, enthält keine typischen Strukturmotive, wird auf nur einem Exon kodiert und ist in allen bisher untersuchten Vertebraten, einschließlich des Menschen, evolutionär hoch konserviert. Ziel der vorliegenden Arbeit war die nähere funktionelle und proteinbiochemische Charakterisierung Fibins. In vielen Geweben adulter Mäuse (Mus musculus), v. a. in zerebralen und muskulären Proben, konnte Fibin mRNA nachgewiesen werden. Im Vergleich zum Adultus war die Expression in Geweben pränataler Mäuse bedeutend höher und unterschied sich in der Region der Vordergliedmaßen kaum von der im Torso. In L929 (Fibroblasten) und HEK Zellen (embryonale Nierenzellen) wurde eine hohe Expression von Fibin nachgewiesen, die in L929 Zellen durch Glukokortikoide und Aktivatoren des Proteinkinase C / MAP-Kinase , Proteinkinase A sowie des NF-κB / AP-1 bzw. Nrf2 / ARE Signalwegs erhöht werden konnte. Die nicht-proteinkodierende 5‘ Region des humanen Fibin Gens zeigte im Luciferase Reporterassay in L929 und HEK Zellen promotogene Eigenschaften, mit einem Aktivitätsmaximum der Sequenz – 836 Basenpaare bezogen auf den Translationsstartpunkt. In L929 Zellen wurde die promotogene Aktivität durch Glukokortikoide und Aktivatoren des Proteinkinase C / MAP-Kinase- sowie des NF κB / AP 1 bzw. Nrf2 / ARE Signalwegs erhöht. Fibin besitzt eine putative N terminale Signalsequenz und eine N Glykosylierungsstelle, die beide experimentell bestätigt wurden. Rekombinantes Fibin zeigte in der Fluoreszenzmikroskopie in COS-7 Zellen (Fibroblasten) eine hohe Kolokalisation mit dem Endoplasmatischen Retikulum, jedoch nur eine geringe mit dem Golgi Apparat. In COS-7 Zellen wurde es nicht über den sekretorischen Weg freigesetzt und zeigte in proteinbiochemischen Untersuchungen eine hohe Tendenz zur Aggregation und Ausbildung von Disulfidbrücken. Es ist anzunehmen, dass Fibin möglicherweise ein bisher unbekanntes Protein für die Ausbildung von Heteromeren benötigt, um erfolgreich sezerniert zu werden.:INHALTSVERZEICHNIS BIBLIOGRAPHISCHE BESCHREIBUNG ABKÜRZUNGSVERZEICHNIS EINFÜHRUNG IN DIE THEMATIK 1. Wachstumsfaktoren und ihre Bedeutung für den Organismus 2. Fibin – ein neuer Wachstumsfaktor ? 3. Rationale der Charakterisierung von Fibin 4. Analyse der Fibinexpression und regulatorische Einflüsse auf die Expression in vitro 5. Notwendigkeit der rekombinanten Expression 6. Fibin als sekretorisches Protein 7. Untersuchungen zur molekularen Architektur von Fibin 8. Zusammenfassung und Ausblick 9. Literaturverzeichnis PUBLIKATION ZUSAMMENFASSUNG ANLAGEN I. Ergänzungsunterlagen zur Publikation II. Erklärung über die eigenständige Abfassung der Dissertation III. Curriculum vitae cand. med. Christian Seyer IV. Danksagung

The tegmentum vasculosum of the duckling consists of a highly folded epithelium which extends over the dorsal and lateral walls of the cochlear duct, separating the scala media from the scala vestibuli. This epithelium consists of two distinct cell types, dark cells and light cells, and is well vascularized. The surface of the epithelium is formed by a mosaic of alternating dark and light cells. The goblet-shaped dark cells have an electron-dense, organelle-rich cytoplasm, and are expanded basally by extensive basolateral plasma membrane infoldings, within which are numerous mitochondria. Dark cells are isolated from each other and from the capillaries within the epithelium by intervening light cells. In contrast, columnar light cells exhibit an electron-lucent, organelle-poor cytoplasm and may extend from the underlying capillaries to the endolymphatic surface. Light cells contain abundant, coated endocytic vesicles on their apical surfaces and are bound, apically, to other light cells or to dark cells by tight junctions and desmosomes. Laterally, light cells are linked to each other either by complex, fluid-filled membrane interdigitations or by extensive gap junctions. Plasma membrane interdigitations and obvious, fluid-filled intercellular spaces characterize the lateral borders between light and dark cells. Vascular corrosion casting reveals the three-dimensional anatomy of the cochlear vasculature. A continuous arteriolar loop fed by anterior and posterior cochlear arterioles encircles the cochlear duct. The rich capillary beds of the tegmentum vasculosum are supplied by arching arterioles arising from this loop. These capillaries are the continuous type and are situated primarily within the core of the epithelium or along its border with the scala vestibuli. The structure and blood supply of the tegmentum vasculosum are characteristic of an epithelium involved in active transport.

Host survival during plague, caused by the Gram-negative bacterium Yersinia pestis, is favored by a robust early innate immune response initiated by IL-1β and IL-18. Precursors of these cytokines are expressed downstream of TLR signaling and are then enzymatically processed into mature bioactive forms, typically by caspase-1 which is activated through a process dependent on multi-molecular structures called inflammasomes. Y. pestis evades immune detection in part by using a Type three secretion system (T3SS) to inject effector proteins (Yops) into host cells and suppress IL-1β and IL-18 production. We investigated the cooperation between two effectors, YopM and YopJ, in regulating inflammasome activation, and found that Y. pestis lacking both YopM and YopJ triggers robust caspase-1 activation and IL-1Β/IL-18 production in vitro. Furthermore, this strain is attenuated in a manner dependent upon caspase-1, IL-1β and IL-18 in vivo, yet neither effector appears essential for full virulence. We then demonstrate that YopM fails to inhibit NLRP3/NLRC4 mediated caspase-1 activation and is not a general caspase-1 inhibitor. Instead, YopM specifically prevents the activation of a Pyrin-dependent inflammasome by the Rho-GTPase inhibiting effector YopE. Mutations rendering Pyrin hyperactive are implicated in the autoinflammatory disease Familial Mediterranean Fever (FMF) in humans, and we discuss the potential significance of this disease in relation to plague. Altogether, the Y. pestis T3SS activates and inhibits several inflammasome pathways, and the fact that so many T3SS components are involved in manipulating IL-1β/IL-18 underscores the importance of these mechanisms in plague.

Legionella pneumophila est responsable d'une forme de pneumonie, la legionellose ou de maladie du légionnaire. Entre 2012 et 2015, les cas annuels ont grimpé de 5848 à 7069 en Europe, la France, l’Allemagne, l’Italie et l’Espagne correspondant à 69% du total. De façon inquiétante, la mortalité était de 8,2% faisant de cette maladie un réel enjeu de santé publique. Un facteur de virulence produit par cette bactérie est la protéine RtxA (~700 kDa) de la famille des protéines RTX (Repeats in ToXin) sécrétée via un système de sécrétion de type 1. Dans ce travail, in vitro, la protéase périplasmique LapG clive la partie N-terminale de RtxA au sein d'un motif di-alanine (position 108-109). La construction de mutants déficients dans l’expression de LapG et LapD a révélé une localisation de RtxA sous le contrôle de ces deux protéines, mécanisme semblable au modèle LapA décrit chez P. fluorescens. Un mutant lapG maintient RtxA à la surface de cellules, à l’opposé d’un mutant ?lapD. Nous avons identifié des systèmes homologues T1SS/LapDG dans de nombreuses espèces Legionella ainsi que d’autres gammaproteobactéries. Concernant la virulence de L. pneumophila, les mutants déficients pour le T1SS (lssBD/tolC) étaient plus altérés dans leur virulence que des mutants du système LapDG. Nous avons également montré, grâce à des expériences de compétition, que L. pneumophila semble cibler les cellules hôtes via la protéine RtxA. L’utilisation d’anticorps spécifiques anti-RtxA nous a permis de détecter RtxA à la surface des cellules hôtes, mais aussi de réduire de la virulence de L. pneumophila, suggérant un rôle important de RtxA lors du processus d’infection, bien que non limitant / Legionella pneumophila is the causative agent of a form of pneumonia called legionellosis or Legionnaires’ disease. Between 2012 and 2015, the reported European cases of legionellosis increased from 5,848 to 7,069 cases per year where France, Germany, Italy and Spain accounted for 69% of the reported cases. Worryingly, the case fatality of incidents was 8.2% making this disease a considerable health concern. One virulence factor produced by this bacterium is a large protein (~700 kDa) belonging to the RTX (Repeats in ToXin) family called RtxA secreted by the type 1 secretion system. The hereby work reveals that, in vitro, LapG periplasmic protease cleaves RtxA N-terminus in the middle of a di-alanine motif (a.a. 108-109). We also show using lapG and lapD mutant strains, that RtxA release is controlled by these two proteins similar to Pseudomonas fluorescenes LapA. We observed that a strain lacking LapG protease maintains RtxA on the cell surface, while a strain lacking LapD does not exhibit cell surface RtxA. Interestingly, we identified the presence of homologous potential T1SS/LapDG systems in many Legionella species and other Gammaproteobacteria. Regarding L. pneumophila virulence, our work showed that mutants for L. pneumophila T1SS (lssBD/tolC) were more disruptive to its virulence than lapG/lapD mutants. We also hypothesize, by challenging infection, that L. pneumophila might be actively targeting its host via RtxA. Additionally, by observing rtxA mutants as well as detecting RtxA on host surface briefly after inoculation and attenuating virulence by using anti RtxA antibodies, we assume an important but not limiting role for this protein in the infection process

Mycobacterium abscessus est une mycobactérie à croissance rapide, et un pathogène opportuniste responsable d’infections pulmonaires notamment chez les patients atteints de la mucoviscidose, et d’infections cutanéomuqueuses. La source de contamination pourrait être environnementale mais des contaminations interhumaines ne sont pas exclues. Les amibes environnementales pourraient jouer un rôle de réservoir. M. abscessus est capable de résister aux mécanismes de défense bactéricides des phagocytes environnementaux et humains. Le génome complet de M. abscessus a été séquencé mettant en évidence de nombreux facteurs de virulence non mycobactériens. Certains sont des facteurs de virulence connus dans le monde bactérien, comme la phospholipase C ou le facteur de captation du magnésium MgtC. Ces facteurs ont été montré induits en présence d’amibes, mais ne peuvent à eux seuls expliquer la survie intracellulaire et la virulence de M. abscessus. Nous avons donc, au cours de ce projet, criblé une banque de mutants générée par transposition chez M. abscessus, à la recherche de mutants dénués de croissance intracellulaire en amibes et macrophages. Cette approche a permis d’identifier, de façon majeure, 5 gènes du locus ESX-4 de M. abscessus codant un système de sécrétion de type VII avec tous ces composants cœur conservés. Pour mieux comprendre la contribution d’ESX-4 dans la survie intracellulaire de M. abscessus, un mutant obtenu par double recombinaison au sein du gène eccB4 dans la souche type de M. abscessus (ΔeccB4) a été construit. EccB4 est un élément structurel central du système de sécrétion codé par ESX-4. ΔeccB4 présente un défaut de survie au sein des cellules, lié à déficit de blocage de l’acidification phagosomale ainsi qu’un défaut de dégradation de la membrane phagosomale, empêchant un contact phagosome-cytosol. Ce travail a permis de révéler pour la première fois dans le monde mycobactérien le rôle d’un locus ancestral de sécrétion ESX-4 au sein d’une mycobactérie. L’étude des protéines secrétées par ce locus est actuellement en cours au laboratoire, afin d’envisager des approches thérapeutiques et vaccinales pour contrer cette mycobactérie multirésistante aux antibiotiques. / Mycobacterium abscessus is a fast growing mycobacterium, and an opportunistic pathogen responsible for lung infections particularly in patients with cystic fibrosis, and for mucocutaneous infections. The source of contamination could be environmental but human-to-human contaminations are not excluded. Environmental amoeba could play a role as a reservoir. M. abscessus is able to resist to the bactericidal defense mechanisms of environmental and human phagocytes. The complete genome of M. abscessus has been sequenced and presents numerous non-mycobacterial virulence factors. Some are known virulence factors in the bacterial world, such as phospholipase C or the magnesium uptake factor MgtC. These factors have been shown to be induced in the presence of amoeba, but cannot alone explain the intracellular survival and virulence of M. abscessus. We thus, in the course of this project, screened a library of mutants generated by transposition in M. abscessus, in search of mutants lacking intracellular growth in amoeba and macrophages. This approach made it possible to identify, in a major way, 5 genes of the ESX-4 locus of M. abscessus encoding a type VII secretion system with all these conserved core components. In order to better understand the contribution of ESX-4 to the intracellular survival of M. abscessus, a mutant obtained by double recombination within the eccB4 gene in the M. abscessus type strain (ΔeccB4) was constructed. EccB4 is a central structural element of the secretion system encoded by ESX-4. ΔeccB4 has a defect of survival within the cells, linked to deficiency of blockage of the phagosomal acidification as well as a defect of degradation of the phagosomal membrane, preventing phagosome-cytosol contact. This work made it possible to reveal for the first time in the mycobacterial world the role of an ancestral locus ESX-4 secretion within a mycobacterium. The study of the proteins secreted by this locus is currently underway in the laboratory, in order to consider therapeutic and vaccine approaches to counter this multiresistant antibiotic mycobacterium.

京都大学 / 新制・論文博士 / 博士(医学) / 乙第13429号 / 論医博第2233号 / 新制||医||1053(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 長船 健二, 教授 妹尾 浩, 教授 川口 義弥 / 学位規則第4条第2項該当 / Doctor of Medical Science / Kyoto University / DFAM

Les patientes atteintes d’un cancer de l’ovaire à cellules claires (COCC) de stade avancé ont un très faible taux de survie après 5 ans à cause d’une forte résistance aux traitements. Depuis 30 ans, la stratégie thérapeutique du COCC consiste en une combinaison de carboplatine et paclitaxel (CP). Il est donc urgent de proposer de nouveaux traitements pour ce cancer. En étudiant une lignée cellulaire issue d’un COCC, nous avons observé que le traitement CP induisait un état de sénescence. Les cellules sénescentes ne prolifèrent plus mais peuvent impacter leur environnement en sécrétant un mélange complexe de molécules. Proposer de nouveaux traitements pour cibler les cellules sénescentes induites par la chimiothérapie nécessite de mieux connaître leurs caractéristiques. Dans ce but, nous avons étudié les protéines à la surface des cellules sénescentes à l’aide d’une méthode de protéomique de pointe. Nous avons trouvé que la protéine DNAJC5 est fortement augmentée à la surface des cellules sénescentes. Cette chaperonne est impliquée dans les mécanismes d’exo- et endocytose, ainsi que dans une voie de sécrétion non-conventionnelle des protéines. Nous avons cherché à savoir si cette voie était activée dans les cellules sénescentes, et avons également étudié l’impact de l’inhibition de DNAJC5 sur la protéotoxicité des cellules, ainsi que sur l’établissement de la sénescence. Nos premiers résultats suggèrent que DNAJC5 aurait un rôle dans la sénescence qui n’a encore jamais été observé. À long terme, cette découverte pourrait contribuer au développement de nouveaux traitement dans le COCC. / Patients treated for an advanced ovarian clear cell carcinoma (OCCC) have a poor 5-year survival rate due to treatment resistance. Since 30 years, the therapeutic strategy consists of a combination of carboplatin and paclitaxel (CP). It is of the upmost urgency to find new treatments against this cancer. We studied the impact of CP treatment on an OCCC cell line and observed that it induced a senescence state in the cells. Senescent cells do not proliferate anymore but have a huge impact on their microenvironment by secreting a complex mix of molecules. We need to know better the characteristics of chemotherapy-induced senescent cells to be able to target them with new treatments. Consequently, we studied the cell surface proteins of senescent cells with a cutting-edge proteomic method. We found that the protein DNAJC5 was upregulated at the cell surface of senescent cells. This chaperone is implicated in exo- and endocytosis mechanisms, as well as in a non-conventional secretion pathway. We wanted to know if this pathway was activated in senescent cells and we studied the impact of DNAJC5 inhibition on the cell proteotoxicity and on senescence establishment. Our first results suggest that DNAJC5 would have a role in senescence, which has never been observed. In the future, this discovery could contribute to the development of new treatments for the COCC.