N-Hydroxylating monooxygenases (NMOs) are flavin dependent enzymes that primarily catalyze the hydroxylation of L-ornithine or L-lysine. This is the first, committed step to siderophore biosynthesis. Pathogenic microbes including Aspergillus fumigatus and Mycobacterium tuberculosis secrete these low molecular weight compounds in order to uptake FeIII from their hosts for their metabolic needs when establishing infection. Therefore, members of this family of enzymes represent novel drug targets for the development of antibiotics. Here, we present the detailed functional and structural analysis of the L-ornithine monooxygenase SidA from Aspergillus fumigatus and the L-lysine monooxygenases MbsG from Mycobacterium smegmatis and NbtG from Nocardia farcinica. The detailed chemical mechanism for flavin oxidation in SidA was elucidated for formation of the C4a-hydroperoxyflavin, deprotonation of L-ornithine, and for the chemical steps of hydrogen peroxide elimination and water elimination. This was performed through a combination of kinetic isotope effect, pH, and density functional theory studies. Also, important residues involved in substrate binding and catalysis were characterized using site-directed mutagenesis for both SidA and NbtG. These include residues involved in coenzyme selectivity, substrate binding, and residues important in C4a-hydroperoxyflavin stabilization and flavin oxidation. The kinetic mechanisms of the L-lysine monooxygenases MbsG and NbtG were characterized which show unique differences with SidA. These include differences in coenzyme selectivity, and C4a-hydroperoxyflavin stabilization. Lastly, the three-dimensional structure of NbtG was solved using X-ray crystallography which is the first structure of a lysine monooxygenase. The structure shows the NADPH-binding domain is rotated ~30° relative to the FAD-binding domain which occludes NADP+ binding in NbtG. Unlike SidA, NbtG does not stabilize a C4a-hydroperoxyflavin and this occlusion observed in the structure might explain this difference. This highlights both the structural and mechanistic diversities among NMOs and the data presented here provides valuable information for the future development of specific inhibitors of NMOs. / Ph. D.

Arsenic (As) is a toxic metalloid and the remediation of soils and waters from this contaminant as well as the prevention of future contamination are still pending tasks in Chile. There are bacteria able to live in environments polluted with arsenic, as they have tolerance mechanisms for this metalloid, or even can use it for energy metabolism. The potential tolerance mechanisms include the production of siderophores, metabolites with chelating activity that can decrease the toxicity of metals and metalloids. Although a correlation between siderophore production and metalloid tolerance has been described, the structure of arsenic-binding siderophores and their implications in tolerance have not been elucidated yet. In this work, it is proposed that bacteria isolated from contaminated environments produce arsenic-binding siderophores. The main aims of this work are to study the production of the siderophores by arsenic-tolerant bacteria, to characterize these compounds and to determine their relation with tolerance to arsenic. Fourteen arsenic-tolerant bacteria were isolated from contaminated water, From these, four strains belonging to the species Rhodococcus erythropolis, Arthrobacter oxydans and Kocuria rosea were selected, in addition to the previously isolated Rhodococcus erythropolis S43, for a more detailed study. The isolates were used to produce siderophore extracts, which were then evaluated for their iron- and arsenic-binding activity. To detect the latter, a new method (As-mCAS) was set up, based on the Chrome Azurol S (CAS) test, an assay to detect iron-chelating activity of siderophores. After testing the extracts, R. erythropolis S43 was selected as the strain with the best arsenic-binding activity. For the subsequent chemical characterization, siderophores were produced under control conditions (iron-free M9 medium) and under stress conditions with arsenic (iron-free M9 medium with sodium arsenite). HPLC analysis of the extracts for both culture conditions showed the presence of a single compound with both an iron-chelating and an arsenic-binding activity. Analyses by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS) for both culture conditions suggested the main presence of the siderophore heterobactin B. In addition, the genome of strain S43 was sequenced. A cluster of ars-genes was predicted, probably responsible for the arsenic-tolerance of the strain. In addition, a complete gene cluster for heterobactin production was found. However, no significant difference was obtained in the expression of these determinants in the presence or absence of arsenic, suggesting that the production of this siderophore in strain S43 is not responsible for the tolerance to the metalloid.

Le fer est un élément essentiel pour presque tous les êtres vivants cependant, il est peu biodisponible et est toxique dans sa forme libre car il engendre des formes réactives de l'oxygène via la réaction de Fenton. Pour se procurer le fer, les microorganismes sécrètent de petites molécules nommées sidérophores ayant une très forte affinité pour Fe3+. Les sidérophores sont requis pour la pathogénie de plusieurs agents pathogènes sur hôtes animaux ou végétaux, mais ce sont également des éliciteurs de défense. Des travaux antérieurs ont montré que les sidérophores activent les défenses et les gènes de réponse à la carence en fer chez Arabidopsis thaliana. L’activation de réponses de défense par le sidérophore requiert un niveau physiologique de fer dans la plante indiquant que le fer participe à la mise en place de ce processus. Au cours de ma thèse, les réponses globales de la plante A. thaliana au sidérophore deferrioxamine (DFO) ont été étudiées par une approche transcriptome. Les résultats obtenus montrent que le principal processus activé est l’immunité. En utilisant des chélateurs de fer différents, j’ai montré que l’effet chélation du fer est responsable de l’activation de l’immunité. Le traitement sidérophore provoque également une perturbation de l’homéostasie du fer et d’autres métaux dans la plante. Dans un mutant irt1 affecté dans le transport de plusieurs métaux lourds dont le fer, l’activation des défenses par la DFO est compromise. Par ailleurs, j’ai étudié l’effet du statut en fer de la plante sur sa sensibilité à la bactérie pathogène Dickeya dadantii et sur l’expression des défenses. Il apparait que le fer est requis pour la mise en place de plusieurs processus de défense en réponse à D. dadantii. Les plantes carencées en fer sont plus résistantes à l’infection. Une quantité de fer physiologique dans la plante est requise pour la multiplication bactérienne et pour l’expression des facteurs de pathogénie, les pectate lyases. Le marquage du fer par la méthode Perls’-DAB-H2O2 montre que celui–ci est très peu abondant dans les tissues végétaux contenant les bactéries qui, elles, sont chargées de fer. Dans l’ensemble, nos résultats montrent que le fer est requis dans l’arsenal défensif de la plante mais qu’il est également un facteur limitant pour le cycle infectieux de D. dadantii. / Iron is an essential element for almost all living organisms, however, it is not bioavailable and is toxic in its free form as it generates reactive oxygen species via the Fenton reaction. To obtain iron, microorganisms secrete small molecules named siderophores with very high affinity for Fe3 +. Siderophores are required for the pathogenesis of several pathogens on animals or plants, but they also are elicitors of defenses. Previous work has shown that siderophores activate defenses and iron deficiency response genes in Arabidopsis thaliana. The activation of defense responses by the siderophore requires a physiological level of iron in the plant indicating that iron is involved in the activation of this process. In my thesis, the global response of the plant A. thaliana to the siderophore deferrioxamine (DFO) has been studied by a transcriptomic approach. The results obtained show that the main process being activated is immunity. By using different iron chelating agents, I have shown that the iron chelation effect is responsible for the activation of immunity. The siderophore treatment also causes disturbance in the homeostasis of iron and other metals in the plant. In an irt1 mutant affected in the transport of heavy metals including iron, activation of defenses by the DFO is compromised. In addition, I studied the effect of iron status of the plant on its susceptibility to the pathogenic bacteria Dickeya dadantii and on the expression of defenses. It appears that iron is required for the establishment of several defense processes in response to D. dadantii. The iron deficient plants are more resistant to infection. A physiological amount of iron in the plant is required for bacterial growth and for expression of the virulence factors, pectate lyases. Iron staining by the Perls' -DAB - H2O2 method shows that low abundance of this metal in plant tissue coincides with the presence of bacteria, which contain high amounts of iron. Overall, our results show that iron is required in the defense arsenal of the plant but it is also a limiting factor for the infectious cycle of D. dadantii.

Alguns fatores de virulência em bactérias de microbiota normal, tais como sideróforos moléculas captadoras de ferro e determinadas fímbrias, possibilitam que esses microorganismos causem infecção quando a colonização ocorre fora de seu habitat normal. Dentre as diferentes espécies bacterianas da microbiota normal com potencial para causar doenças, como as infecções do trato urinário (ITUs), destaca-se Escherichia coli. Certas cepas dessa espécie bacteriana apresentam um plasmídeo (pColV) que contém um gene que codifica IutA, o receptor para a aerobactina férrica, que é um sideróforo frequentemente associado às ITUs. Recentemente, nosso grupo estabeleceu que IutA apresenta a capacidade de induzir proliferação de linfócitos B. Neste trabalho, objetivamos identificar as moléculas e os mecanismos que modulam a proliferação de linfócitos B induzida por IutA recombinante (rIutA) de E. coli. Para avaliar se a proliferação era dependente de outras células, foram realizados ensaios de proliferação de células B marcadas com CFSE utilizando o sobrenadante de macrófagos ou células dendríticas estimulados com rIutA, por 24 horas, ou coculturas em placas de transwell. As análises desses ensaios revelaram que a proliferação das células B induzida por rIutA é dependente de moléculas liberadas por células acessórias, ou seja, ocorre de forma indireta. Os resultados dos ensaios utilizando células deficientes da molécula adaptadora MyD88 mostraram dependência da sinalização por essa molécula nos linfócitos B, mas não nas células acessórias, para que ocorresse a proliferação. Posteriormente, os ensaios in vitro utilizando células de animais deficientes para TLR4, TLR2 e IL-33R mostraram que a sinalização por esses receptores é dispensável. Contrariamente, a utilização do antagonista do receptor de IL-1 reduziu significativamente a proliferação de células B tratadas com esse antagonista. Além disso, identificamos que rIutA leva à expressão de IL-1 em macrófagos e células dendríticas estimuladas com essa proteína. Assim, nossos resultados sugerem que rIutA de E. coli induz a proliferação policlonal de linfócitos B de maneira independente de células T, por um mecanismo mediado por células acessórias, como macrófagos e células dendríticas. Embora não identifiquemos o receptor macrofágico ou das células dendríticas a qual rIutA se liga, sugerimos que a ação de rIutA sobre essas células induz a produção de IL-1 que age sobre seu receptor em células B, induzindo-as a proliferação. Esses resultados abrem perspectivas de estudo de IutA como molécula estimuladora do tecido linfóide associado a mucosa, assim como evasina de E. coli patogênicas. / Indigenous bacteria may contain some virulence factors, such as siderophores iron chelator molecules and fimbriae, that allow these microorganisms to become pathogens in sites others than their normal habitat. Among the different indigenous bacterial species in the gut, Escherichia coli is one with potential to cause infections, mainly urinary tract infection (UTI). Certain strains of E. coli have a plasmid (pColV), which encode ferric aerobactin outer membrane receptor, IutA, often associated with UTI. Our group has recently described IutA as an inducer of B cell proliferation. Here, we identify the molecules and mechanisms that modulate the proliferation of B lymphocytes induced by recombinant IutA (rIutA) from E. coli. To determine whether the B cell proliferation induced by rIutA is dependent on other cell, we carried out assays with CFSE-labeled B cells cocultured separately with macrophages or dendritic cells stimulated with rIutA using transwell membranes or incubated with conditioned medium from these cells. The analysis of the results showed that rIutA indirectly induced the proliferation of B cells in a manner dependent on molecules released by accessory cells. When we analyzed the ability of rIutA in inducing proliferation of cells from mice deficient in adapter molecule MyD88, we found that this signaling molecule is crucial for signaling induced by rIutA in B cells, but not in accessory cells. A similar analysis with cells from mice deficient in Toll like receptor (TLR) 4, TLR2 or inteukin (IL-) 33 receptor revealed that these receptors were not required for rIutA signaling of any tested cells. Conversely, the pretreatment of the B cells with IL-1 receptor antagonist significantly decreased the proliferation of these cells in response to conditioned medium from cultures of IutAstimulated macrophages. Moreover, we determined that rIutA induced the expression of IL-1 in macrophages and dendritic cells stimulated with IutA. Altogether, our results suggest that IutA from E. coli induces polyclonal B-cell proliferation independently of T cells in a mechanism mediated by accessory cells such as macrophages and dendritic cells. Although the IutA-binding receptors from macrophages and dendritic cells have not been identified, we suggested that rIutA induces these cells to produce IL-1, which in turns acts on its receptor on B cells, triggering proliferation. These results open perspectives for studying IutA as a molecule that stimulates the mucosa-associated lymphoid tissue and as an immune-evasion molecule from pathogenic E. coli.

Alguns fatores de virulência em bactérias de microbiota normal, tais como sideróforos moléculas captadoras de ferro e determinadas fímbrias, possibilitam que esses microorganismos causem infecção quando a colonização ocorre fora de seu habitat normal. Dentre as diferentes espécies bacterianas da microbiota normal com potencial para causar doenças, como as infecções do trato urinário (ITUs), destaca-se Escherichia coli. Certas cepas dessa espécie bacteriana apresentam um plasmídeo (pColV) que contém um gene que codifica IutA, o receptor para a aerobactina férrica, que é um sideróforo frequentemente associado às ITUs. Recentemente, nosso grupo estabeleceu que IutA apresenta a capacidade de induzir proliferação de linfócitos B. Neste trabalho, objetivamos identificar as moléculas e os mecanismos que modulam a proliferação de linfócitos B induzida por IutA recombinante (rIutA) de E. coli. Para avaliar se a proliferação era dependente de outras células, foram realizados ensaios de proliferação de células B marcadas com CFSE utilizando o sobrenadante de macrófagos ou células dendríticas estimulados com rIutA, por 24 horas, ou coculturas em placas de transwell. As análises desses ensaios revelaram que a proliferação das células B induzida por rIutA é dependente de moléculas liberadas por células acessórias, ou seja, ocorre de forma indireta. Os resultados dos ensaios utilizando células deficientes da molécula adaptadora MyD88 mostraram dependência da sinalização por essa molécula nos linfócitos B, mas não nas células acessórias, para que ocorresse a proliferação. Posteriormente, os ensaios in vitro utilizando células de animais deficientes para TLR4, TLR2 e IL-33R mostraram que a sinalização por esses receptores é dispensável. Contrariamente, a utilização do antagonista do receptor de IL-1 reduziu significativamente a proliferação de células B tratadas com esse antagonista. Além disso, identificamos que rIutA leva à expressão de IL-1 em macrófagos e células dendríticas estimuladas com essa proteína. Assim, nossos resultados sugerem que rIutA de E. coli induz a proliferação policlonal de linfócitos B de maneira independente de células T, por um mecanismo mediado por células acessórias, como macrófagos e células dendríticas. Embora não identifiquemos o receptor macrofágico ou das células dendríticas a qual rIutA se liga, sugerimos que a ação de rIutA sobre essas células induz a produção de IL-1 que age sobre seu receptor em células B, induzindo-as a proliferação. Esses resultados abrem perspectivas de estudo de IutA como molécula estimuladora do tecido linfóide associado a mucosa, assim como evasina de E. coli patogênicas. / Indigenous bacteria may contain some virulence factors, such as siderophores iron chelator molecules and fimbriae, that allow these microorganisms to become pathogens in sites others than their normal habitat. Among the different indigenous bacterial species in the gut, Escherichia coli is one with potential to cause infections, mainly urinary tract infection (UTI). Certain strains of E. coli have a plasmid (pColV), which encode ferric aerobactin outer membrane receptor, IutA, often associated with UTI. Our group has recently described IutA as an inducer of B cell proliferation. Here, we identify the molecules and mechanisms that modulate the proliferation of B lymphocytes induced by recombinant IutA (rIutA) from E. coli. To determine whether the B cell proliferation induced by rIutA is dependent on other cell, we carried out assays with CFSE-labeled B cells cocultured separately with macrophages or dendritic cells stimulated with rIutA using transwell membranes or incubated with conditioned medium from these cells. The analysis of the results showed that rIutA indirectly induced the proliferation of B cells in a manner dependent on molecules released by accessory cells. When we analyzed the ability of rIutA in inducing proliferation of cells from mice deficient in adapter molecule MyD88, we found that this signaling molecule is crucial for signaling induced by rIutA in B cells, but not in accessory cells. A similar analysis with cells from mice deficient in Toll like receptor (TLR) 4, TLR2 or inteukin (IL-) 33 receptor revealed that these receptors were not required for rIutA signaling of any tested cells. Conversely, the pretreatment of the B cells with IL-1 receptor antagonist significantly decreased the proliferation of these cells in response to conditioned medium from cultures of IutAstimulated macrophages. Moreover, we determined that rIutA induced the expression of IL-1 in macrophages and dendritic cells stimulated with IutA. Altogether, our results suggest that IutA from E. coli induces polyclonal B-cell proliferation independently of T cells in a mechanism mediated by accessory cells such as macrophages and dendritic cells. Although the IutA-binding receptors from macrophages and dendritic cells have not been identified, we suggested that rIutA induces these cells to produce IL-1, which in turns acts on its receptor on B cells, triggering proliferation. These results open perspectives for studying IutA as a molecule that stimulates the mucosa-associated lymphoid tissue and as an immune-evasion molecule from pathogenic E. coli.

La découverte de stratégies thérapeutiques innovantes contre les bactéries pathogènes est cruciale. Le fer est essentiel pour la prolifération bactérienne et les bactéries pathogènes excrètent des molécules organiques de faible poids moléculaire, appelées sidérophores, pour acquérir le fer(III). Les systèmes d’acquisition de fer sidérophores-dépendants sont transmembranaires et peuvent être utilisés comme des portes d’entrée pour faire pénétrer des conjugués sidérophores-antibiotiques dans la bactérie dans le cadre d’une stratégie dite du cheval de Troie. Nous avons synthétisé des conjugués constitués d’analogues des sidérophores pyochéline, aminochéline ou azotochéline couplés à des oxazolidinones antibiotiques. Dans la majorité de nos approches la liaison entre le sidérophore et l’antibiotique est le résultat d’une réaction de chimie click. La synthèse et les propriétés biologiques des vecteurs et des conjugués synthétisés sont présentées dans ce manuscrit. / Constant discovery of innovative therapeutic strategies against pathogenic bacteria is crucial. Iron is essential for bacterial proliferation since it is integrated in the active site of essential enzymes. Many pathogenic bacteria excrete low molecular weight secondary metabolites called siderophores in order to promote iron (III) acquisition. Transmembrane siderophore-dependent iron uptake systems can be used as gates by siderophore-antibiotic conjugates. In this context, we synthesized conjugates between analogs of pyochelin, aminochelin or azotochelin with oxazolidinones antibiotics. In this project many of the conjugation between vectors and antibiotics were the result of click chemistry reactions even the use of peptidic bonds was also explored. Synthesis and biological properties of conjugates and vectors are presented in this manuscript.

Les processus d'altération des verres basaltiques constituant le pourtour vitrifié des laves en coussins influencent les grands cycles géochimiques terrestres puisqu'ils contribuent à l'évolution de la composition des océans et de la croûte océanique et sont des acteurs de la dynamique du climat. Au regard de la diversité des communautés bactériennes peuplant ces aquifères, il est admis que l'altération de ces roches est un processus biologiquement catalysé. Toutefois, peu d'études ont cherché à quantifier cette contribution bactérienne, au regard de la diversité et de la complexité des interactions possibles. Ce travail vise à expliciter et quantifier l'influence des ligands bactériens et notamment des sidérophores sur les processus d'altération, en décomposant les systèmes naturels en situations expérimentales simplifiées. Dans cette optique, trois verres basaltiques modèles, porteurs ou non de Fe(II)/Fe(III), ont été synthétisés. Des expériences de dissolution de ces verres, à pH neutre et à 25 C, ont été réalisées (1) en conditions abiotiques (solutions de sidérophores purs, milieu de culture stérile), (2) en présence de la souche Pseudomonas aeruginosa mais en confinant le verre dans des membranes de dialyse, (3) au contact direct de la souche. En parallèle de ces expériences, des analyses des solides ont été menées et un protocole d'analyse verticale de la composition d'un verre altéré par LA-ICP-MS a notamment été mis au point. L'analyse des solutions/milieux d'altération par ICP-OES a permis d'évaluer les cinétiques et la stoechiométrie de la dissolution. Les expériences en conditions abiotiques révèlent qu'en présence de sidérophores, l'extraction préférentielle du fer structural (respectivement de l'aluminium pour un verre sans fer) via des réactions de complexation en surface des verres, est le moteur de la dissolution du réseau vitreux. Réciproquement, dans les cultures bactériennes, la production de sidérophore par Pseudomonas aeruginosa est déclenchée lorsque (1) aucun contact direct verre/bactérie n'est possible, (2) le fer est absent de l'environnement cellulaire, (3) certains métaux toxiques ou pouvant nuire aux métabolismes bactériens (typiquement l'aluminium) sont néanmoins présents et (4) le fer n'est disponible que sous sa forme réduite. Outre l'accélération de l'hydrolyse du réseau vitreux en présence de sidérophores, l'influence positive de la constitution d'un biofilm en surface des verres sur la dissolution de ces derniers a également été observée. Ces résultats mettent en évidence la forte affinité de la souche pour les verres basaltiques ainsi que le rôle central du fer, oxydé ou réduit, dans les mécanismes dégagés / The alteration of ocean basalts partly controls the composition of seawater and of the oceanic crust which in turn influences the Earth's mantle geochemistry and may also have a significant impact on Earth's climate over a geological timescale. Regarding the existence of an extensive subsurface biosphere within the basaltic basement of the uppermost oceanic crust, the weathering of basaltic glass is now considered as a bacterial mediated process. However, the diversity and complexity of the involved mechanisms interfere with the quantification of the impact of microorganisms. This work was conducted to determine and quantify the influence of organic ligands produced by the cells, and notably siderophores on the alteration processes. Simplified experimental systems were designed to gradually mimic natural environments. Fe(III)-, Fe(II)-bearing, and Fe-free synthetic basaltic glasses were prepared and submitted to dissolution experiments at 25 C and near neutral pH conditions in (1) abiotic conditions (pure siderophore solutions and sterile bacterial medium), (2) in the presence of the bacterial strain Pseudomonas aeruginosa but isolated from the bacterial suspension by dialysis bags and (3) directly in contact with the strain. In parallel, solid analysis were conducted and LA-ICP-MS analysis protocols were notably developped. Dissolution kinetics and stoichiometry were determined by measuring elemental concentrations in solutions by ICP-OES. In abiotic conditions, the siderophore-promoted dissolution of the glass network appears to be driven by the complexation and the preferential extraction of iron (respectively aluminium for no-Fe bearing glasses). Reciprocally, in biotic systems, the siderophore production is stimulated when (1) no direct interaction between the glass and bacteria is possible, (2) the system is Fe-defficient, (3) toxic metals (e.g. aluminium) are nevertheless present and (4) iron is only available under its reduced form. In addition to the promotion of hydrolysis rates of the silicate network by siderophores, biofilms forming at the glass surfaces were shown to have a positive impact on the dissolution kinetics. These results show the specific affinity of the strain for basaltic glasses and the central role of iron under its oxidized or reduced form in the dissolution mechanisms

No description available.

The soil-borne, rhizosphere-competent, filamentous fungus Trichoderma virens is a well-known biocontrol agent able to control pathogenic fungi through the production of antibiotics, the induction of systemic resistance in host plants, or by directly parasitizing the competing fungus. Competition for iron is another means by which Trichoderma can hinder competing microorganisms, and siderophores are a means by which microorganisms obtain iron. In silico analysis of the T. virens genome suggested that two genes putatively encoding extracellular siderophore-producing nonribosomal peptide synthetases (NRPSs) were present. In this study, a disruption was created in one of the genes, TvNPS6, to create a mutant unable to produce the NRPS TvNps6 (DeltaTvnps6). Previously, a mutant (DeltaTvsidD) had been generated with a disruption in the second gene (TvSIDD) encoding an NRPS thought to be involved in siderophore biosynthesis. A double mutant (DeltaDeltaTvsidDTvnps6) was generated by transformation of a DeltaTvsidD strain with a vector targeting disruption of TvNPS6. This resulted in transformants disrupted within both the putative siderophore-producing NRPSs. Thus, three mutants were available for analysis of the role of these genes in the ecology of T. virens. Transformants were confirmed by PCR and Southern blotting analysis. Phenotypic characterization of the mutants included both HPLC analysis of siderophore production, growth on agar and in liquid media, conidiation, germination in the presence of hydrogen peroxide, biocontrol against Pythium ultimum, in vitro confrontation against Rhizoctonia solani and growth with iron chelators to determine the contribution of reductive iron assimilation (RIA) compared to that of siderophores. The HPLC analysis demonstrated that T. virens Gv 29-8 (wild-type) produced a single siderophore peak when grown in an iron-depleted medium. This peak was not present in the DeltaTvnps6 and DeltaDeltaTvsidDTvnps6 mutants but was apparent with the DeltaTvsidD mutants. From the HPLC analysis, T. virens evidently produces a coprogen-type siderophore. Few differences were observed in the other phenotypic tests, though hydrogen peroxide showed some small inhibitory effects towards the DeltaTvnps6 mutants. The addition of chelators, which inhibit RIA, exerted some negative effects on all strains growing under iron-limited media, particularly the DeltaTvnps6 and DeltaDeltaTvsidDTvnps6 strains. This study demonstrated that although T. virens has two genes putatively encoding siderophore producing NRPSs, only the TvNPS6 gene was required for extracellular siderophore production. The greater sensitivity of the mutants towards the iron chelators suggests that unlike other other fungi studied, Trichoderma virens utilizes RIA, rather than siderophore production, as the primary means by which the fungus obtains iron in an iron-limited environment.

Magister Scientiae - MSc (Biotechnology) / The yearly increase of global population will result in a greater demand for crop production, but with the climates changes and a lack of available agricultural land it will become increasingly more difficult to provide sufficient crops to feed everyone adequately. Application of the PGPE has proven over the past researches to be able enhance growth of plants via various growth promoting mechanisms. To identify suitable growth promoting bacteria candidate, E. plantagineum plant was used to isolate endophytes from the root after surface sterilization. The isolates bacteria were used to inoculate Brassica napus L seeds. The effects of isolate's ability to promote growth were evaluated based on the certain growth parameters after 42 days in the green house. Isolate CP5 produced highest results in all growth parameter. Isolates CP5 was selected as potential candidate as significant improvement was shown by this isolate. This isolate was tested for the ability to produce ACC deaminase, solubilize phosphate, synthesize IAA and siderophore production. Furthermore isolate CP5 growth promotion abilities was tested on Brassica napus L under antimony stress. / 2021-08-31