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Functionalized Materials Based on the Clay Mineral KaoliniteFafard, Jonathan January 2018 (has links)
The use of kaolinite for preparing functionalized materials for specialized applications is still a relatively niche research subject. This is in spite of its low cost, high availability, and the potential for covalently grafting organic functional groups to its inner and outer surfaces. These grafted compounds have been shown to be highly resistant to heat and solvents, making them very useful for certain applications, for example in polymer nanocomposite materials that require high thermal resistance during polymer processing.
Solid state NMR has been shown to play an essential role in solving the structure of functionalized kaolinite materials, however the current knowledge base for these functionalized kaolinites is notably lacking for some nuclei such as 1H, 27Al and 17O.
Research was undertaken to address these concerns by developing new synthetic strategies for preparing kaolinite based materials for use as nanocomposites and to examine commonly prepared modified kaolinite precursors materials by 1H and 27Al MAS NMR in an attempt to demonstrate their utility for characterizing kaolinite intercalated and grafted complexes.
Solid state 1H NMR of a natural kaolinite, kGa-1b, identified two main proton signals attributed to inner and inner surface hydroxyl protons. The different affinity of these two types of hydroxyl groups towards exchange with deuterium was used to differentiate between the two. The 1H NMR spectra of a DMSO intercalated kaolinite, kDMSO, and a methanol grafted kaolinite, kmethoxy, were fitted with high accuracy using models consistent with the known structures of these materials.
The 27Al MAS NMR spectra of a natural kaolinite, kGa-1b, a DMSO intercalated kaolinite, kDMSO, and a methanol grafted kaolinite, kmethoxy measured at 21.1T showed little difference between one another, while noticeable differences could be seen at 4.7T. 27Al MQMAS experiments found almost no difference between these materials in the multiple quantum dimension, suggesting the differences that were observed are a result of differences in quadrupolar parameters rather than chemical shifts. The 27Al NMR spectra of kGa-1b, kDMSO and kmethoxy were fitted with good accuracy using models consistent with known structures of these materials. Different Al(III) sites with CQ values varying by up to 0.6MHz were found. The 27Al NMR spectra of two different methanol grafted kaolinites were also compared and it was found that the intensities of the sites with lower values of CQ were dependent on the quantity of grafted aluminum sites.
The interlayer space of kaolinite was functionalized with a block copolymer: poly(ethylene)-block-poly(ethylene glycol) using a kaolinite pre-intercalated with DMSO, kDMSO, and with a biodegradable polymer: poly(lactide) using a kaolinite pre-intercalated with urea, kurea, both by using melts of the polymer. The polymers were found to completely displace their precursors from the interlayer space giving a monolayer type arrangement of the polymer.
Attempts were made to graft compounds containing polymerizable functional groups: 3-allyloxy-1,2-propanediol and ethylene glycol vinyl ether to kaolinite’s inner surfaces using a kaolinite pre-intercalated and grafted with methanol, kmethoxy, and a kaolinite pre-intercalated with DMSO, kDMSO, respectively. Both compounds were found to displace their precursors from the interlayer space, adopting a monolayer type arrangement. 13C and 29Si NMR results suggest 3-allyloxy-1,2-propanediol’s allyl group remains intact and partially keys into the clay mineral’s siloxane rings. Ethylene glycol vinyl ether was found to undergo intramolecular cyclization to form an acetal product, consuming its vinyl group in the process. This reaction was observed using an unmodified kaolinite, kGa-1b, suggesting that the clay mineral’s surfaces, both inner and outer, act as an acid catalyst.
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Three-Dimensional Structure Determination of Surface Sites with Dynamic Nuclear Polarization Surface Enhanced NMR Spectroscopy / Détermination structurales de sites de surface en spectroscopie RMN exaltée par la polarisation dynamique nucléaireBerruyer, Pierrick 08 September 2017 (has links)
La capacité à déterminer les structures moléculaires en trois dimensions à partir de monocristaux par des méthodes de diffraction a transformé la chimie des matériaux. Le problème de la détermination de structure est en grande partie non résolu, en particulier si le système étudié est situé à une surface et n'a pas de périodicité, comme dans la plupart des matériaux fonctionnels actuels. La Résonance Magnétique Nucléaire (RMN) à l’état solide serait une méthode de choix pour caractériser les surfaces mais la limite de détection de la RMN est beaucoup trop faible pour permettre à la RMN de caractériser les surfaces. L’introduction récente d’une nouvelle approche utilisant la Polarisation Dynamique Nucléaire (DNP) pour améliorer la sensibilité de la RMN des surfaces (DNP SENS) permet à présent de réaliser des expériences qui étaient totalement impossible il y a quelques années encore. Plus particulièrement, grâce à la méthode DNP SENS, les présents travaux de thèse aboutissent à la première structure tridimensionnelle d’un complexe organométallique supporté sur silice, avec une précision de 0,7 Å. De nombreux aspects de l’expérience DNP SENS ont été exploré. Le transport de de l’hyperpolarisation par diffusion de spin est primordial et un modèle numérique dans les matériaux mésoporeux a été développé. De plus, une nouvelle matrice aqueuse se basant sur des gels polyacrylamides a été mise au point et utilisée pour la caractérisation par RMN de nanoparticules permettant ainsi d’étendre les domaines d’application de DNP SENS. Enfin les premières expériences RMN DNP combinant hauts champs magnétiques et haute fréquence de rotation d’échantillon sont présentées. / The ability to understand the properties of chemical systems relies on their detailed description at the molecular level. Over the last century, several methods based on X-ray diffraction have allowed a structure-based understanding of many materials. However, several key questions often remain unanswered. In particular when the system under investigation is located on a surface. Although an extensive range of surface-sensitive methods are available for surface science and give valuable information, they only lead to a partial understanding of surfaces at the molecular level. Moreover, these methods are not compatible with all kinds of materials and usually require the use of a model and pristine surface. Solid-State NMR would be a method of choice to characterize surfaces. However, the approach suffers from its intrinsically low sensitivity and this is strongly emphasize in the case of surfaces where the atoms of interest are diluted in the matrix. Dynamic Nuclear Polarization (DNP) applied to surfaces (SENS) recently emerged as a very promising method to characterize surface sites. It offers a dramatic enhancement of NMR sensitivity and DNP applied to materials has led to many examples in the last ten years. In the present thesis, I have shown that DNP SENS, in combination with EXAFS, allowed the detailed 3D structure determination of the silica-supported organometallic complex determined with a precision of 0.7 angstroms. In parallel, some experimental aspect of DNP SENS have been explored. A spin diffusion has been developed to understand diffusion of hyperpolarization in porous media. A new aqueous DNP matrix, coined DNP Jelly, has been developed to characterize nanoparticles and thus expanding experimental range of DNP SENS. Finally, the first experiment of DNP NMR at fast magic angle spinning (up to 40 kHz) and high field are reported.
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Dynamique fonctionnelle des protéines : études d'une lipase et d'une protéine A de la membrane externe de bactérie / Protein functional dynamics : studies of a lipase and a bacterial outer membrane protein ANars, Guillaume 29 September 2015 (has links)
La compréhension de la fonction des protéines et des systèmes biologiques passe par une connaissance fine des mécanismes moléculaires sous-jacents. La cristallographie et la résonance magnétique nucléaire permettent d'appréhender ces mécanismes au niveau atomique en fournissant des informations sur la structure et sur la dynamique des macromolécules biologiques. Nous nous sommes ainsi intéressés à deux protéines, la lipase lip2 de la levure Yarrowia lipolytica et la protéine membranaire OmpA de la bactérie Klebsiella pneumoniae. Nous avons recherché des conditions d'expression de la protéine lip2 marquée uniformément ou spécifiquement sur une boucle (appelée " lid ") afin d'en étudier la dynamique. Des conditions de marquage uniforme à l'azote 15 de lip2 recombinante dans Yarrowia lipolytica ont été mises au point, mais le marquage acide aminé spécifique n'a pu être réalisé à cause de phénomènes de dilution isotopique trop importants dans cette levure. Nous avons résolu par cristallographie aux rayons X la structure du domaine C-terminal de la protéine OmpA et étudié sa dynamique en solution par RMN (techniques de relaxation 15N). Nous avons caractérisé la dynamique de son domaine N-terminal membranaire reconstitué en liposomes par RMN du solide : en utilisant la rotation à l'angle magique à 60kHz et à la détection 1H sur un spectromètre 1 GHz, nous avons pu attribuer une majorité des résonances du tonneau ? et établir un profil de paramètre d'ordre des vecteurs NH. Des expériences de protéolyse ménagée ont révélé par ailleurs un site de coupure unique à la trypsine au sein de la boucle extracellulaire L3. Enfin, une première caractérisation de la protéine complète exprimée dans la membrane externe d'Escherichia coli a été entreprise par RMN du solide sur membranes externes natives. / Understanding the function of proteins and biological systems requires an accurate knowledge of the underlying molecular mechanisms. Crystallography and nuclear magnetic resonance provide a detailed description of these mechanisms, with an atomic resolution, by providing data on both structures and motions. We investigated two proteins, the lip2 lipase from the yeast Yarrowia lipolytica and the membrane protein OmpA from the bacteria Klebsiella pneumoniae. We tried to produce lip2 with uniform and amino-acid specific stable isotope labelling on its functional loop (the lid) for NMR experiments. The homologous recombinant expression in Yarrowia lipolytica turned out to be the most efficient for uniform labelling but failed for specific labelling due to extensive isotope scrambling. We solved the structure of OmpA C-terminal domain by X-ray crystallography, and analyzed its dynamics in solution by NMR (15N relaxation techniques). We characterized its transmembrane N-terminal domain in proteoliposomes by solid state NMR: using state of the art ultra-fast MAS (60 kHz), 1H detection and a 1 GHz spectrometer, we could assign most ?-barrel resonances and establish a NH order parameter profile. In a complementary approach, we used proteolysis to reveal a unique trypsin cleavage site on the extracellular loop 3. Finally, a first characterization of the full-length protein expressed in the outer membrane of Escherichia coli was initiated by solid state NMR on intact outer membranes.
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Electrosynthesis and characterization of thin copolymer films based on pyrrole and thiophene derivativesDang, Xuan Dung 11 August 2005 (has links)
Die Copolymerisation wurde mit dem Ziel untersucht, polymere Materialien zu synthetisieren, die die individuellen Eigenschaften der entsprechenden Homopolymere kombinieren. Die Dissertation konzentrierte sich auf die Elektrosynthese und Charakterisierung von leitfähigen Copolymerfilmen auf Basis von Pyrrol- und Thiophenderivaten. Mit einer Reihe von elektrochemischen, spektroskopischen und mikroskopischen Untersuchungsmethoden (Zyklovoltammetrie, elektrochemische Impedanz-spektroskopie, photoelektrochemische Spektroskopie, Elektrospray- Ionisations-Massenspektroskopie, Festkörper- NMR, Raman-Spektroskopie, Thermoanalyse und Rasterelektronenmikroskopie) wurde die Bildung echter Copolymere von Pyrrol mit Bithiophen und von 3-Methylthiophen mit Ethyl-3-thiophenazetat nachgewiesen. Die analytischen Ergebnisse bestätigen, dass Random- Copolymere und keine Block-Copolymere gebildet wurden. Die elektronischen und strukturellen Eigenschaften der Copolymerfilme liegen zwischen denen der jeweiligen Homopolymere und sind abhängig von der Copolymerzusammensetzung. Insbesondere die Halbleiterparameter der Copolymerfilme von Pyrrol mit Bithiophen wie Flachband-Potential, Bandlücken-Energie und Ladungsträgerdichte verschieben sich von denen des reinen Polypyrrols bis zum Polybithiophen, wenn der Gehalt an Bithiophen im Copolymerfilm vergrößert wird. Diese Parameter sind einstellbar durch Variation des Monomerverhältnisses oder des Polymerisationspotentials. Außerdem konnten die strukturellen und elektronischen Eigenschaften des funktionalisierten Polymers Ethyl-3-thiophenazetat durch Copolymerisation mit 3-Methylthiophen deutlich verbessert werden. Die synthetisierten leitfähigen Copolymerfilme können in der Sensorik Anwendung finden. / The copolymerization has been studied as a new strategy to synthesize polymer materials by combining interesting properties of the respective homopolymers. In this dissertation, the work focused on the electrosynthesis and characterization of conducting copolymer films based on pyrrole and thiophene derivatives. A variety of electrochemical, spectroscopic and microscopic techniques such as cyclic voltammetry, electrochemical impedance and photoelectrochemical spectroscopy, electrospray ionization mass spectroscopy, solid state NMR and Raman spectroscopy, thermal analysis and scanning electron microscopy supported the formation of true copolymers of pyrrole with bithiophene and 3-methylthiophene with ethyl-3-thiophene acetate. The analytical results exhibited that random copolymers were produced rather than block copolymers. The electronic and structural characteristics of the copolymer films were intermediate between those of the respective homopolymers and they were dependent on the copolymer composition. In particular, the semiconducting parameters of the copolymer films of pyrrole and bithiophene such as flat band potential, band gap energy and charge carrier density shifted from those of polypyrrole to polybithiophene with increasing bithiophene content of the copolymer films. Such parameters were controlled precisely by alternating either the monomer ratio or the polymerization potential. In addition, the morphological and electronic properties of the functionalized polymers of ethyl-3-thiophene acetate were increased significantly by copolymerization with 3-methylthiophene. The obtained conducting copolymer films were able to be applied in the field of sensoric.
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A non-aqueous procedure to synthesize amino group bearing nanostructured organic–inorganic hybrid materialsGöring, M., Seifert, A., Schreiter, K., Müller, P., Spange, S. 15 September 2014 (has links)
Amino-functionalized organic–inorganic hybrid materials with a narrow distributed nanostructure of 2–4 nm in size were obtained by means of a template-free and non-aqueous procedure. Simultaneous twin polymerization of novel amino group containing twin monomers with 2,2′-spirobi[4H-1,3,2-benzodioxasiline] has been applied for this purpose. The amino groups of the organic–inorganic hybrid material are useful for post derivatization. / Dieser Beitrag ist aufgrund einer (DFG-geförderten) Allianz- bzw. Nationallizenz frei zugänglich.
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Solid-State NMR Characterization of the Structure and Morphology of Bulk Heterojunction Solar CellsBaughman, Jessi Alan 20 August 2012 (has links)
No description available.
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Development of new proton conducting materials for intermediate temperature fuel cellsaoxiang, Xiaoxiang January 2010 (has links)
The work in this thesis mainly focuses on the preparation and characterization of several phosphates and solid oxide systems with the aim of developing new proton conducting materials for intermediate temperature fuel cells (ITFCs). Soft chemical methods such as sol-gel methods and conventional solid state methods were applied for the synthesis of these materials. Aluminum phosphate obtained by a solution method is single phase and belongs to one of the Al(H₂PO₄)₃ allotropies with hexagonal symmetry. The material is stable up to 200°C and decomposes into Al(PO₃)₃ at a higher temperature. The electrical conductivity of pure Al(H₂PO₄)₃ is on the order of 10⁻⁶-10⁻⁷ S/cm, very close to the value for the known proton conductors AlH₃(PO₄)₂•3H₂O and AlH₂P₃O₁₀•2H₂O. Much higher conductivity is observed for samples containing even a trace amount of excess H₃PO₄. It is likely that the conduction path gradually changes from grain interior to the surface as the acid content increases. The conductivity of Al(H₂PO₄)₃-0.5H₃PO₄ exhibited a good stability over the measured 110 hours. Although tin pyrophosphate (SnP₂O₇) has been reported to show a significantly high conductivity (~10⁻² S/cm) at 250°C in various atmospheres, we observed large discrepancies in the electrical properties of SnP₂O₇ prepared by different methods. Using an excess amount of phosphorous in the synthetic procedure generally produces SnP₂O₇ with much higher conductivity (several orders of magnitude higher) than samples with stoichiometric Sn:P ratios in their synthetic procedure. Solid state ³¹P NMR confirmed the presence of residual phosphoric acid for samples with excess starting phosphorous. Transmission Electron Microscope (TEM) confirmed an amorphous layer covered the SnP₂O₇ granules which was probably phosphoric acid or condensed phases. Thereby, it is quite likely that the high conductivity of SnP₂O₇ results mainly from the contribution of the residual acid. The conductivity of these samples exhibited a good stability over the measured 80 hours. Based on the observations for SnP₂O₇, we developed a nano core-shell structure based on BPO₄ and P₂O₅ synthesised by solid state methods. The particle size of BPO₄ using this method varied between 10-20 nm depending on the content of P₂O₅. TEM confirmed the existence of an amorphous layer that is homogeneously distributed. The composite exhibits the highest conductivity of 8.8×10⁻² S/cm at 300°C in air for 20% extra P₂O₅ and demonstrates a good stability during the whole measured 110 hours. Polytetrafluoroethylene (PTFE) was introduced into the composites in order to increase malleability for fabrication. The conductivity and mechanical strength were optimized by adjusting the PTFE and P₂O₅ content. These organic-inorganic composites demonstrate much better stability at elevated temperature (250°C) over conventional SiC-H₃PO₄-PTFE composites which are common electrolytes for phosphoric acid fuel cells (PAFCs). Fuel cells based on BPO₄-H₃PO₄-PTFE composite as the electrolyte were investigated using pure H₂ and methanol as fuels. A maximum power density of 320 mW/cm² at a voltage of 0.31 V and a maximum current density of 1.9 A/cm² at 200°C were observed for H₂/O₂ fuel cells. A maximum power density of 40 mW/cm² and maximum current of 300 mA/cm² 275°C were observed when 3M methanol was used in the cell. Phosphoric acid was also introduced into materials with internal open structures such as phosphotungstic acid (H₃PW₁₂O₄₀) and heteropolyacid salt ((NH₄)₃PW₁₂O₄₀), for the purpose of acquiring additional connections. The hybrids obtained have a cubic symmetry with enlarged unit cell volume, probably due to the incorporation of phosphoric acid into the internal structures. Solid state ³¹P NMR performed on H₃PW₁₂O₄₀-xH₃PO₄ (x = 0-3) showed additional peaks at high acid content which could not assigned to phosphorus from the starting materials, suggesting a strong interaction between H₃PW₁₂O₄₀ and H₃PO₄. The conductivity of hybrids was improved significantly compared with samples without phosphoric acid. Fourier transform infrared spectra (FT-IR) suggest the existence of large amount of hydrogen bonds (OH••••O) that may responsible for the high conductivity. A H₂/O₂ fuel cell based on H₃PW₁₂O₄₀-H₃PO₄-PTFE exhibited a peak power density of 2.7 mW/cm² at 0.3 V in ambient temperature. Solid oxide proton conductors based on yttrium doped BaZrO₃ were investigated by introducing potassium or lanthanum at the A-sites. The materials were prepared by different methods and were obtained as a single phase with space group Pm-3m (221). The unit cell of these samples is slightly smaller than the undoped one. The upper limit of solid solution formation on the A-sites for potassium is between 5 ~ 10% as introducing more K results in the occurrence of a second phase or impurities such as YSZ (yttrium stabilized zirconium). K doped Barium zirconates showed an improved water uptake capability even with 5% K doping, whereas for La doped ones, water uptake is strongly dependent on particle size and synthetic history. The conductivity of K doped BaZrO₃ was improved by a factor of two (2×10⁻³ S/cm) at 600°C compared with undoped material. Fuel cells based on Pt/Ba₀₋₉₅K₀₋₀₅Zr₀₋₈₅Y₀₋₁₁Zn₀₋₀₄O[subscript(3-δ)]/Pt under humidified 5% H₂/air conditions gave a maximum power density 7.7 mWcm⁻² at 718°C and an interfacial resistance 4 Ωcm⁻². While for La doped samples, the conductivity was comparable with undoped ones; the benefits of introducing lanthanum at A-sites may not be so obvious as deficiency of barium is one factor that leads to the diminishing conductivity.
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Structure of bio-macromolecular complexes by solid-state Nuclear Magnetic Resonance / Structure de complexes biologiques macromoléculaires par Résonance Magnétique Nucléaire du solideBarbet-Massin, Emeline 03 May 2013 (has links)
La RMN du solide a récemment émergé en tant que technique très puissante en biologie structurale, permettant de caractériser au niveau atomique des systèmes qui ne peuvent être étudiés par d’autres méthodes. Des protocoles spécifiques à la RMN du solide sont à présent bien établis pour la préparation des échantillons, l’attribution des spectres et l’acquisition de contraintes structurales. Ensemble, ces protocoles ont ouvert la voie aux premières déterminations de structures tridimensionnelles de molécules biologiques à l’état solide avec une résolution atomique, et ce non seulement pour des échantillons protéiques microcristallins, mais également pour des systèmes plus complexes tels que des fibrilles ou des protéines membranaires.La détermination structurale de tels systèmes est cependant encore loin d’être une routine, et des avancées de plus large ampleur sont attendues grâce à des développements aux niveaux méthodologique et matériel. Pour cette raison, une majeure partie du travail présenté dans cette thèse a été consacrée au développement d’expériences à la fois nouvelles et sophistiquées pour améliorer la sensibilité et la résolution des méthodes déjà existantes pour attribuer les spectres et élargir les possibilités offertes par la RMN du solide en vue d’étudier la structure de systèmes protéiques plus larges. Ces développements reposent notamment sur l’utilisation de champs magnétiques très intenses et sur la rotation des échantillons à l’angle magique dans la gamme des très hautes vitesses angulaires. Nous montrons que dans ce cadre, il est possible de concevoir des expériences utilisant uniquement des champs radiofréquences à faible puissance ainsi que d’utiliser des transferts sélectifs, l’acquisition de corrélations à travers les liaisons chimiques et la détection proton.En particulier, nous montrons que des expériences de corrélation homonucléaire reposant sur des transferts scalaires deviennent une alternative compétitive aux expériences basées sur des transferts dipolaires. Deux nouvelles séquences d’impulsion permettant de détecter des corrélations 13C-13C à travers les liaisons chimiques avec une excellente résolution sont présentées; couplées à des transferts 15N-13C, elles permettent l’attribution des résonances de la chaîne principale des protéines avec une grande sensibilité.De plus, nous démontrons qu’il est possible d’obtenir des raies très fines pour les résonances de protons dans des protéines complètement protonées à l’état solide grâce à la rotation à l’angle magique à ultra-haute vitesse, sans avoir recours à la deutération. Dans ce contexte, nous avons développé de nouvelles stratégies permettant d’attribuer rapidement et de façon fiable les résonances des spins 1H, 15N, 13CO, 13CA et 13CB dans différentes classes de protéines, ainsi que pour mesurer des contraintes structurales à partir des distances entre protons. L’approche proposée repose sur la haute sensibilité des protons et accélère donc considérablement les processus d’attribution et de détermination structurale des protéines à l’état solide, comme illustré sur la protéine beta-2-microglobuline.Enfin, nous avons appliqué cette nouvelle approche pour réaliser l’attribution et l’étude structurale et fonctionnelle de trois catégories de complexes protéiques: les fibrilles amyloidogènes formées par beta-2-microglobuline, les nucléocapsides du virus de la rougeole, et les nucléocapsides d’Acinetobacter phage205. Nous avons également utilisé la technique de Polarisation Nucléaire Dynamique pour obtenir des informations sur l’ARN des nucléocapsides du virus de la rougeole.Nous considérons que les résultats présentés dans cette thèse représentent une avancée substantielle dans le domaine de la RMN du solide appliquée à la biologie structurale. Grâce aux progrès actuels dans ce domaine, l’impact de la RMN biomoléculaire à l’état solide promet d’augmenter dans les prochaines années. / Solid-state NMR has recently emerged as a key technique in modern structural biology, by providing information at atomic level for the characterization of a wide range of systems that cannot be investigated by other atomic-scale methods. There are now well established protocols for sample preparation, resonance assignment and collection of structural restraints, that have paved the way to the first three-dimensional structure determinations at atomic resolution of biomolecules in the solid state, from microcrystalline samples to fibrils and membrane-associated systems. These determinations are however still far from being routine, and larger breakthroughs are expected with further methodological and hardware developments. Accordingly, most of the work presented in this thesis consists of the development of new, sophisticated NMR experiments to improve the sensitivity and resolution of the currently existing schemes for resonance assignment and to extend the capabilities of solid-state NMR in terms of structural investigation of proteins for the analysis of large substrates. These developments notably rely on the use of very high magnetic fields and ultra-fast magic-angle spinning (MAS). We show the great potential of this particular regime, which enables the use of low-power experiments and the acquisition of selective cross-polarization transfers, through-bond correlations and 1H-detected correlations.In particular, we show that homonuclear correlation experiments based on through-bond transfers become competitive alternatives to dipolar transfer schemes. Two new pulse sequences that detect sensitive and resolved 13C-13C through-bond correlations are introduced, which coupled to 15N-13C dipolar transfer steps provide sensitive routes for protein backbone resonance assignment.Furthermore, we demonstrate that narrow 1H NMR line widths can be obtained for fully protonated proteins in the solid state under ultra-fast MAS, even without perdeuteration. In this context, we have developed new strategies for extensive, robust and expeditious assignments of the 1H, 15N, 13CO, 13CA and 13CB resonances of proteins in different aggregation states, and new schemes for the measurements of site-specific 1H-1H distance restraints. This approach relying on the very high sensitivity of 1H spins remarkably accelerates the processes of assignment and structure determination of proteins in the solid state, as shown by the assignment and de novo structure determination of native beta-2-microglobulin. Finally, we apply this new approach to perform resonance assignment and to study structural and dynamic features of three complex protein aggregates: amyloid fibrils formed by native and D76N beta-2-microglobulin, Acinetobacter phage 205 nucleocapsids and measles virus (MeV) nucleocapsids. We also used Dynamic Nuclear Polarization to obtain the first information about RNA in MeV nucleocapsids.We believe that the results presented in this thesis represent a substantial step forward for solid-state NMR in structural biology. With all the current advances in the field, the impact of biomolecular solid-state NMR is likely to increase in the next years.
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Les liposomes biphényles : un nouveau modèle de biomembrane magnétique fluorescent : caractérisation par RMN des solides, microscopies optiques et électroniques et SAXS / Biphenyl liposomes : a new model of fluorescent, magnetic biomembrane : characterisation by Solid State NMR, Optical and Electronic microscopies and SAXS : Perspectives in VectorisationHarmouche, Nicole 16 December 2013 (has links)
Un nouveau modèle de biomembrane de type liposome a été développé à partir de lipides synthétisés comportant une unité biphényle sur leur chaînes sn2 et une chaîne aliphatique sn1 de longueur et insaturation variables. L’anisotropie de susceptibilité magnétique positive de ces molécules induit une déformation en oblate de ces liposomes dits « biphényles » dans le champ magnétique B0. Cette déformation spécifique a été caractérisée par RMN des solides 31P et 2H en faisant varier différents paramètres : l’intensité de B0, l'élasticité membranaire, la température et la taille des liposomes (Helfrich, 1973). Ces vésicules déformées ont pu être observées par microscopies optiques et électroniques et la rémanence de la déformation en dehors de B0 a pu être analysée par diffusion des rayons X aux petits angles (SAXS). Enfin, les premières applications des liposomes biphényles comme nouveau modèle de biomembrane pour analyser la structure et l’orientation (par RMN des solides 15N) de peptides ou protéines membranaires, ont été étudiées. / A new model of biomembrane (liposome) was developed from synthesized lipids containing a biphenyl unit on the sn2 aliphatic chain and possessing a sn1 aliphatic chain which varies in length and unsaturation. The positive magnetic susceptibility anisotropy of these molecules induces an oblate deformation of these «biphenyls » liposomes under the magnetic field B0. This particular deformation has been characterized by 31P and 2H solid state NMR by varying different parameters: the intensity of B0, the membrane elasticity, the temperature and the size of the liposomes (Helfrich, 1973). These deformed vesicles were observed by optical and electron microscopy and the remanence of the deformation outside B0 has been analyzed by Small angles X-ray scattering (SAXS).Finally, the first applications of biphenyls liposomes as new biomembrane model to analyze the structure and orientation of membrane proteins or peptides were studied by 15N solid state NMR
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Estudo da dinâmica molecular em copolímeros em bloco compostos de poli(metacrilato de metila), poli(ácido acrílico) e poli(acrilato de chumbo) por técnicas de ressonância magnética nuclear e análise térmica / Study of Molecular Dynamics in Copolymers of Poly (methyl methacrylate), poly (acrylic acid) and Poly (acrylate lead) by nuclear magnetic resonance and thermal analysesSilva, André Luis Bonfim Bathista e 07 July 2009 (has links)
Esta tese envolveu o estudo da dinâmica molecular em copolímeros em bloco compostos de poli(metacrilato de metila) (PMMA), poli(ácido acrílico) (PAA) e Poli(acrilato de chumbo) (PAPb) por técnicas de Ressonância Magnética Nuclear e de análise térmica (DSC e DMTA). Estes copolímeros em bloco foram sintetizados visando a obtenção de compostos para serem utilizados, tanto como lentes oftálmicas com maiores índices de refração, como materiais dedicados à proteção radiológica, sendo estas duas propriedades de emprego individual ou integrado. Para o estudo destes materiais, as amostras foram confeccionadas com várias composições, incluindo aquelas nas formas puras contendo apenas um bloco, resultantes da combinação de dois blocos, e as triblocos, com diferentes quantidades relativas de PAPb, variando de 1 a 40%. Para o caso do PMMA, a dinâmica molecular é bem conhecida, sendo caracterizada por uma relaxação β, que envolve mais especificamente movimentos de seus ramos laterais e que ocorre dentro de um amplo intervalo de temperatura centrado em torno da ambiente, e pela transição vítrea, que envolve, predominantemente, movimentos da cadeia principal que ocorrem para temperaturas em torno de 100oC. Devido à extensão destes dois eventos em grandes intervalos de temperatura, eles acabam se superpondo já em temperaturas abaixo de 100oC. O fato da relaxação β ocorrer para o PMMA em torno da temperatura ambiente, confere-lhe uma de suas características mais importantes, não ser quebradiço. Porém, devido à presença do grupo hidroxila no PAA, que permite a ocorrência de ligações de hidrogênio entre os diferentes ramos laterais, a relaxação β é suprimida neste material, tornando-o quebradiço e não adequado para as aplicações desejadas. No caso do copolímero tribloco, espera-se que o PAPb também possa interferir na característica mecânica final do material, em função de sua participação na dinâmica molecular do copolímero. Para este estudo foram preparadas várias amostras com diferentes quantidades relativas de PMMA, PAA e PAPb, de modo entendermos a dinâmica molecular destes materiais, individual e coletivamente, afim de selecionar os mais indicados para as aplicações tecnológicas almejadas. Para o estudo destas amostras, utilizamos tanto técnicas de análise térmica (DSC e DMTA), que fornecem, de forma relativamente rápida, dados importantes sobre a dinâmica macroscópica, quanto métodos básicos e avançados de RMN no estado sólido, que propiciam informações mais detalhadas sobre a dinâmica molecular. Estes estudos indicaram que a presença do PAA, obrigatória na rota de síntese utilizada para a inserção do PAPb, é um elemento indesejável no produto final, pois ele sempre atua na supressão da relaxação β. Adicionalmente, os dados obtidos indicaram que o PAPb, em grandes quantidades, também age na supressão desta relaxação. Embora a proposição destes novos materiais para a área oftálmica não ser muito adequada, já que a quantidade de PAPb necessária para a obtenção de amostras com bons índices de refração deve ser grande (bem acima de 5%, quando elas tornam-se quebradiças), as amostras com pequenos conteúdos de PAPb (até 5%) permitiram uma redução de até 50% dos raios-x incidentes. Finalmente, os estudos realizados por técnicas que observam detalhes da dinâmica molecular, tanto em níveis macroscópicos (DSC e DMTA), quanto moleculares (RMN), ofereceram excelentes informações básicas tanto sobre a mobilidade dos diferentes ramos que compõem os copolímeros em bloco, quanto a interação/miscibilidade entre os diferentes blocos, que afeta também a dinâmica global do sistema. / This thesis involved the study of molecular dynamics in triblock copolymers consisting of poly (methyl methacrylate) (PMMA), poly (acrylic acid) (PAA) and Poly (lead acrylate) (PAPb) by solid-state Nuclear Magnetic Resonance (NMR) and thermal analyses (DSC and DMTA). These block copolymers were synthesized in order to obtain materials not only presenting higher refractive index but also offering good radiological protection, which are useful for individual and combined applications. For the study of these materials, the samples were prepared with various compositions, including those in pure form containing only a block, resulting from the combination of two blocks, and the triblock with different relative amounts of PAPb, ranging from 1 to 40%. In the case of PMMA, the molecular dynamics is well known, characterized by a β relaxation, which involves more specifically the ester side-group dynamics occurring within a broad temperature range centered around the room temperature, and the glass transition, predominantly involving the main chain dynamics that occur for temperatures around 100oC. Due to large extension of these two dynamical events in wide temperature ranges, they merge at temperatures below 100oC. The fact that the β relaxation occurs for the PMMA around the room temperature, confers to it one of its most important features, toughness. However, due to the presence of the hydroxyl group in PAA, which allows the occurrence of hydrogen links between different branches, the β relaxation in this material is strongly suppressed, making it brittle and not suitable for the desired applications. In the case of the triblock copolymer, it is also expected that PAPb may also interfere with the mechanical properties of the final material due to its involvement in the full molecular dynamics of the copolymer. For this study, several samples were prepared with different relative amounts of PMMA, PAA and PAPb, in order to understand the molecular dynamics of these materials, individually and collectively, and select the most suitable ones for the desired technological applications. To characterize and study these samples, we employed thermal analyses (DSC and DMTA), which give quick and important data on the macroscopic dynamics, and basic and advanced solid-state NMR methods, which provide more detailed information about he molecular dynamics. These studies indicated that PAA, necessary along the synthesis route used for the insertion of PAPb in the triblock copolymers, is an undesirable element in the final product, because it is always acting on the suppression of β relaxation. Although the proposition of these new materials for the ophthalmic area is not very appropriate, since the amount of PAPb necessary to obtain good refraction indexes would be necessarily large (over 5%, when they become brittle), the samples with small amounts of PAPb (up to 5%, when they present good mechanical properties) allowed a significant reduction of about 50% of the incident x-rays. Finally, using solid-state NMR methods, including modern Exchange experiments and thermal analyses (DSC and DMTA), it was possible to understand in detail the individual and cooperative motions of the main chain and side groups. The most import result obtained indicate that, despite being important inserting PAPB and PAA in the block copolymer for improving the desired optical and x-ray shielding properties, the presence of these blocks tend to suppress the β relaxation, reducing thesample mechanical properties.
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