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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
121

Relacionamento entre câncer colorretal e indicadores socioeconômicos no município de São Paulo: uso de modelos de regressão espacial / Relationship between colorectal cancer and socioeconomic indicators in São Paulo: use of spatial regression models.

Medeiros, Márcio José de 22 May 2015 (has links)
Introdução: O câncer de localização colorretal é o terceiro tipo de câncer mais comumente diagnosticado no mundo. As taxas de incidências do câncer colorretal não são homogêneas, apresentando diferenças entre os países. Não há estudos brasileiros que investiguem a variação geográfica da incidência de câncer colorretal conjuntamente com indicadores socioeconômicos. Esta avaliação pode revelar diferenças locais importantes na ocorrência da doença. Objetivos: Descrever as taxas de incidência e de mortalidade do câncer colorretal no Município de São Paulo, segundo sexo e faixa etária, no período de 1997 a 2009 e realizar análise da distribuição espacial segundo distrito dos casos de câncer colorretal diagnosticados em residentes no Município de São Paulo entre 1997 e 2009. Material e Métodos: Foram analisados os novos casos de câncer colorretal diagnosticados em residentes no Município de São Paulo de 1997 a 2009. Estes dados foram fornecidos pelo Registro de Câncer de Base Populacional de São Paulo (RCBP-SP). A análise dos dados foi realizada em duas etapas: na primeira, com cárater exploratório/descritivo, os dados analíticos foram utilizados para descrever a incidência e mortalidade por câncer colorretal no período pesquisado. Na segunda etapa, os casos de câncer colorretal foram geocodificados, agrupados por distrito administrativo e estudados segundo a metodologia de análise para dados de área. Toda análise foi implementada no software R. Resultados: Com 7,7 por cento e 7,3 por cento dos casos respectivamente em homens e mulheres, câncer colorretal foi o segundo tipo de câncer mais frequente, sendo a quarta (9,0 por cento dos óbitos) e a segunda (11,0 por cento dos óbitos) causa de morte respectivamente em homens e mulheres. Do total de casos incidentes (39.250), 47,50 por cento são do sexo masculino e 52,50 por cento do sexo feminino. Destes, 4.784 (37,7 por cento ) evoluíram a óbito, sendo 48,1 por cento no sexo masculino e 51,9 por cento no sexo feminino. As taxas específicas por sexo e faixa etária de incidência aumentam fortemente com a idade, na faixa etária de 80 ou mais anos chega a 377,9 e 282,9 (por 100 mil hab.) para o sexo masculino e feminino respectivamente, sendo relativamente próximas em ambos os sexos até a idade de 49 anos e maiores para homens nas faixas etárias subsequentes. As taxas específicas por sexo e faixa etária de mortalidade, apresentam comportamento análogo, aumentam fortemente com a idade, na faixa etária de 80 ou mais anos chega a 206,9 e 159,9 (por 100 mil hab.) para o sexo masculino e feminino respectivamente. A taxa anual de incidência ajustada pela população de SEGI (1960) e modificada por DOLL et al. (1966) apresenta-se em torno de 30,0 (por 100 mil hab.) nos três primeiros anos observados (1997-1999), chega a 19,0 (por 100 mil hab.) em 2002, volta a crescer nos anos seguintes (2003-2005), chegando a 31,7 (por 100 mil hab.) e matem-se estável de 2007 a 2009. A taxa anual de mortalidade de câncer colorretal ajustada pela população crescente até 2004, chegando a 15,7 (por 100 mil hab.) e decrescem nos anos seguintes, chegando a aproximadamente 3,6 mortes por 100 mil habitantes em 2009. A média anual da taxa bruta de incidência e os indicadores socioeconômicos apresentam dependência forte dependência espacial, sendo o menor Índice I de Moran observado foi para o índice de exclusão/inclusão dos anos potenciais de vida perdidos (IEX apvp = 0,29), os demais são acima de 0,6. Os indicadores apresentam forte correlação linear com a média anual da taxa bruta de incidência. Conclusões: As distribuições da incidência e da mortalidade apresentam padrões semelhantes ao identificado mundialmente. O Município de São Paulo tem taxas equivalentes às encontradas nas regiões em transição econômica. Foi identificada forte dependência espacial na distribuição da incidência de câncer colorretal no Município de São Paulo, com a formação de clusters nas áreas centrais e periféricas. As maiores taxas são encontradas nas áreas centrais e nas periferias. A distribuição espacial da incidência de câncer colorretal apresenta forte associação com a distribuição dos indicadores de status socioeconômico no Município de São Paulo, em particular apresenta associação positiva com indicadores de renda e escolaridade. / Introduction: Colorectal cancer is the third most common diagnosed cancer worldwide. Colorectal cancer incidence rates are not homogeneous, with differences between countries. No Brazilian studies investigated the geographical variation of colorectal cancer incidence with socioeconomic indicators. This study may reveal important local differences in the occurrence of the disease. Objectives: To describe colorectal cancer incidence and mortality in São Paulo, by sex and age using 1997-2009 data and perform the spatial distribution analysis according to district colorectal cancer cases diagnosed in residents at Municipality of São Paulo between 1997 and 2009. Methods: Colorectal cancer cases diagnosed from 1997 to 2009 in São Paulo residents were analyzed. These data were provided by Population Based Cancer Registry of São Paulo (RCBP-SP). Data analysis was performed in two stages. First, analytical data were used to describe the incidence and mortality from colorectal cancer. Second, colorectal cancer cases were geocoded, grouped by administrative district and studied according data area analysis methodology. All analysis was implemented in software R. Results: 7.7 per cent and 7.3 per cent of observed cases was respectively in men and women, colorectal cancer was the second most common cancer, the fourth (9.0 per cent ) cause of death in men and the second (11.0 per cent ) cause in women. It was diagnosed 39,250 colorectal cancer new cases, 47.50 per cent in men and 52.50 per cent in women. And 4,784 (37.7 per cent ) died, with 48.1 per cent in male and 51.9 per cent in female. The specific incidence rates strongly increase with age, at the 80 years or more age reaches 377.9 and 282.9 (per 100,000 inhabitants) for male and female respectively. The mortality specific rates, have similar behavior, strongly increase with age and at the 80 years or more age reaches 206.9 and 159.9 (per 100,000 inhabitants), for males and female respectively. The annual age adjusted incidence rate was around 30.0 (per 100,000 inhab.) in the first observed years (1997-1999), arrives to 19.0 (per 100,000 inhab.) in 2002, grow back reaching 31.7 (per 100,000 inhab.) and kill stable from 2007 to 2009. The annual age colorectal cancer mortality rate grow reaching 15.7 (per 100,000 inhab.) and decrease in the following years, reaching approximately 3.6 deaths per 100,000 inhabitants in 2009. The average annual the crude incidence rate and the socio-economic indicators show strong spatial dependence, the lowest Moran´s I Index was observed for the exclusion/inclusion potential years of life lost index (IEX apvp = 0.29). The indicators show strong linear correlation with the average annual crude incidence rate. Conclusions: Distributions of incidence and mortality have similar worldwide patterns. The Municipality of São Paulo has equivalent rates founded in regions in economic transition. It was identified strong spatial dependence in the distribution of the incidence of colorectal cancer, with the formation of clusters in the central and peripheral areas of Municipality of São Paulo. The highest rates were found in the central areas and lowest were found in the suburbs. The spatial distribution of colorectal cancer incidence has a strong association with the socioeconomic status indicators distribution in Municipality of São Paulo. It was identified positive association between colorectal cancer incidence with income and education indicators.
122

Dynamiques spatio-temporelles d'espèces démersales clés du golfe du Lion : bénéfices potentiels d’aires marines protégées / Spatio-temporal dynamics of demersal exploited species in the Gulf of Lions : potential usefulness of Marine Protected Areas

Morfin, Marie 18 October 2013 (has links)
Les espèces démersales représentent 50% des captures des pêcheries françaises du golfe du Lion, dont la plupart sont pleinement exploitées, voir surexploitées depuis plusieurs décennies. Cette thèse évalue la pertinence d'aires marines protégées (AMPs) comme outil de gestion et de conservation de ces populations. Jusqu'à présent de telles zones ont été uniquement mises en place le long des côtes pour protéger des espèces très peu mobiles. Le problème est plus complexe pour les espèces vivant en haute mer car leur habitat est plus large et plus diffus. Pour ce faire, la distribution spatiale de 12 espèces démersales exploitées clés ont été étudiées de 1994 à 2010, à l'aide d'observations scientifiques et d'outils statistiques ad hoc. Une approche géostatistique a permis de détecter des structures d'auto-corrélation spatiale pour l'ensemble des espèces, et de produire des cartes de distributions annuelles de chaque espèce. Ces distributions sont apparues très stables sur les dix-sept années, mis à part un phénomène d'expansion/ rétraction avec le niveau d'abondance totale sur la région. Par ailleurs une approche par modèle linéaire généralisé a révélé des associations importantes de ces espèces à un habitat stable dans le temps. Ces résultats sont en accord avec la théorie du bassin de MacCall selon laquelle l'association d'une espèce à un habitat est densité-dépendant, et l'augmentation de la densité d'individus dans une zone serait à l'origine de la colonisation d'habitats sub-optimaux. Protéger l'habitat optimal d'une espèce permettrait alors de constituer un habitat «source», si la zone est judicieusement choisie ; en effet le report de l'effort de pêche à l'extérieur de l'AMP peut au contraire rendre cette mesure inefficace voir délétère. Par ailleurs les populations adultes occupaient généralement des zones plus concentrées et incluses dans l'aire de répartition des juvéniles. Ces zones communes d'habitats essentiels (reproduction et nourriceries) peuvent être potentiellement intéressantes à protéger dans un cadre monospécifique. L'hétérogénéité observée des répartitions d'une espèce à l'autre implique l'instauration de zones très clairsemées, et rend la gestion difficile dans une cadre pluri-spécifique. Une zone de taille raisonnable a tout de même été identifiée, représentant 20% de la population de chaque espèce et représentative de la diversité des habitats de cette région. / Demersal species represent 50% of French fisheries catches in theGulf of Lions, most of which are fully exploited, or overfished for decades. This thesis evaluates the relevance of marine protected areas (MPAs) as a tool for conservation and management of these populations. So far these areas have been implemented only along the coast to protect the very few mobile species. The problem is more complex for deep sea species because their habitat is broader and more diffuse. To do this, the spatial distribution of 12 key demersal species exploited were studied from 1994 to 2010, with scientific observations and ad hoc statistical tools. A geostatistical approach allowed to detect spatial autocorrelation structures for all species, and produce maps of annual distributions of each species. These distributions appeared very stable over 17 years, apart from a phenomenon of expansion/ contraction with the level of total abundance in the region. In addition, a generalized linear model approach revealed significant associations of these species to a temporally stable habitat. These results are consistent with MacCall basin theory, according which habitat suitability is a density-dependent thus the increase of individuals in an area make them colonize sub-optimal habitats. An optimal habitat under protection could thus be "source" habitat, if the area is carefully chosen. Indeed reporting the fishing effort outside the MPA can instead make this measure ineffective or deleterious. The adult population were generally in more concentrated areas and included in the spatial range of juveniles. These common areas of essential habitat (breeding and nursery) may be potentially interesting to protect a single species . However, the heterogeneity of distributions of a species to another involves the introduction of very sparse areas, making the management difficult. However an area of ​​reasonable size has been identified, covering 20% ​​of the population of each species and representative of the diversity of bottom habitats in the region.
123

Localização industrial: uma aproximação usando processos pontuais espaciais / Firm location: an approach using spatial point process

Adriano Barasal Morales 08 June 2018 (has links)
O objetivo desta pesquisa é mostrar como aproveitar novas bases de dados disponíveis e o avanço de métodos computacionais para extrair informações estatísticas sobre a localização espacial de firmas. Para isso, propomos uma aplicação de métodos de estatística espacial para modelar o padrão de localização de novas empresas de serviços no município de São Paulo. Neste trabalho, assumimos que a localização espacial dessas firmas foi gerada através de um processo pontual bidimensional e assim aplicamos dois modelos distintos: um baseado em intensidade não estocástica baseada no processo de Poisson, e um modelo de intensidade estocástica baseado processo de Cox log Gaussiano (Log Gaussian Cox Process - LGCP). A principal base de dados utilizada é base georeferenciada baseada no Cadastro Central de Empresas construída pelo Centro de Estudos da Metrópole (CEM), contendo observações de empresas na região metropolitana de São Paulo, para o ano base de 2000. Utilizamos como variáveis explicativas de localização informações advindas de sistemas de informações geográficas (SIG), o Censo demográfico e imagens de satélite do National Oceanic and Atmospheric Administration (NOAA). Os resultados encontrados mostram a importância dessa metodologia no processo de construção de modelos de localização espacial, combinando distintas fontes de dados e introduzindo novas perspectivas sobre o estudo empírico de economia urbana. / The objective of this research is to show how to take advantage of new available databases and computational methods to extract statistical information about the spatial location of firms. In this sense, we propose an application of spatial statistics methods to model the location patterns of new services firms in the city of São Paulo. In this paper, we assume that the spatial location of these firms was generated through a two-dimensional point process and thus we applied two distinct models: one based on non-stochastic intensity based on the Poisson process, and a stochastic intensity model based on the Log Gaussian Cox process (LGCP). The main input used is a georeferenced database based on the Central Business Register made by the Center for Metropolis Studies (CEM), containing data of firms in the metropolitan region of São Paulo, for the base year 2000. We use as explanatory variables information from geographic information systems (GIS), demographic census and satellite imagery from National Oceanic and Atmospheric Administration (NOAA). The results show the usefulness of these models the construction of spatial location models, combining different data sources and introducing new perspectives on the empirical study of urban economics.
124

Explorando recursos de estatística espacial para análise da acessibilidade da cidade de Bauru / Exploring spatial statistics tools for an accessibility analysis in the city of Bauru

Ana Paula Krempi 04 June 2004 (has links)
A acessibilidade está relacionada com a maneira como a disponibilidade de transportes e os usos do solo afetam os indivíduos na realização de viagens para o desenvolvimento de suas atividades habituais. Freqüentemente se assume que os moradores de baixa renda da periferia são os mais afetados pela falta de acesso aos meios de transporte. A questão subjacente a esta afirmação, no entanto, permanece sem uma resposta definitiva: o nível de renda, por si só, seria um indicativo do nível de acessibilidade? O objetivo deste estudo é explorar a união de ferramentas de estatística espacial e SIG (Sistema de Informações Geográficas) com um propósito específico, que é o de analisar as relações entre aspectos da distribuição espacial de características da população (como a renda, por exemplo) de uma cidade média brasileira e os diversos níveis de acessibilidade por diferentes modos de transporte nela observados, buscando possíveis respostas para esta pergunta. Quando se utiliza procedimentos de visualização e classificação de dados espaciais comuns em SIG, nem sempre as informações são diretamente perceptíveis. Logo, deve-se utilizar ferramentas que ampliem as possibilidades de compreensão e análise dos dados. Inicialmente, as ferramentas selecionadas para uso neste trabalho são apresentadas e discutidas quanto à sua aplicação e utilização na análise proposta. Para tal foram utilizados dados coletados em uma pesquisa origem–destino (O-D) realizada na cidade de Bauru - SP, agrupados por setores censitários e adicionados ao SIG, aplicando técnicas de estatística espacial utilizadas para entidades do tipo área. Os resultados obtidos são apresentados na forma de mapas e de índices que medem a associação espacial global e local entre estas zonas. Uma das conclusões interessantes da aplicação foi a identificação de regiões da cidade com dinâmica particular, que contrariam o padrão global observado nas demais partes da área urbana. Pôde-se constatar ainda particularidades a respeito do uso de cada modo de transportes. O modo automóvel como motorista, por exemplo, possui agrupamento espacial bem definido no nível de renda alta tanto nas regiões de periferia, como nas de transição e central. Já o modo ônibus é predominantemente utilizado nas zonas de renda baixa das regiões de periferia e transição, enquanto que os modos não motorizados possuem uma dinâmica bem diversificada em toda a área urbana. Estes e outros resultados do estudo de caso deixam claro que as análises de estatística espacial em ambiente SIG criam uma ferramenta para ampliar a análise convencional de acessibilidade em transportes / Transportation accessibility is directly related to the level of transportation supply and land uses and the way they affect individuals in their trip desires for accomplishing regular-basis activities. It is often assumed that low-income segments of the population living at the periphery of the cities are those affected the most by poor conditions of transportation accessibility. There is a subjacent question behind this statement, however, which is: can the income level or the location of an individual alone explain his/her accessibility level? In order to look for answers to this question, the aim of this study is to analyze, making use of spatial statistics tools in a GIS (Geographic Information System) environment, the relationships between accessibility and income and their geographical distributions in a medium-sized Brazilian city. The application of the most commonly used GIS resources, such as visualization and spatial data classification tools, not always assures a full comprehension of the phenomenon under analysis. As a consequence, many problems require tools that enhance the possibilities of observation and analysis. As tools with this characteristic have been used in this work, they were initially introduced. Thereafter, the possibilities of use of these tools in the problem analyzed were also discussed. Data of an origin-destination (O-D) survey carried out in the city of Bauru, located in the state of São Paulo, which brings information about four different transportation modes, were used in this study. Such data, grouped following the census tracts, were carefully examined in a Geographic Information System in order to look for spatial patterns of accessibility that are not visible in the traditional approaches. The results of the analysis are presented in maps and as indices that are able to capture glabal and local spatial association patterns in areas. One of the interesting outcomes of the application was the identification of regions with particular dynamics, which go against the pattern found in the overall urban area. Particularities regarding each particular transportation mode have also been noticed. The zones where the automobile is most used (by drivers, not by passengers) are spatially clustered, regardless if the zone is at the periphery, transition zone or central area of the city. The bus trips are predominantly carried out in low-income areas of the periphery and transition rings, while the non-motorized modes (walk and bicycle) have shown a very diversified dynamics in the entire urban area. This and other results of the case study clearly indicate that spatial statistics analyses in a GIS environment create a powerful tool to extend conventional transportation accessibility analysis
125

Estimativa do volume de passageiros ao longo de uma linha de transporte público por ônibus a partir da Geoestatística / Estimation of passenger volume along a bus transit line using Geostatistics

Marques, Samuel de França 15 February 2019 (has links)
A modelagem clássica da demanda por transportes ignora um importante aspecto normalmente presente na estrutura das variáveis de interesse: a autocorrelação espacial. Pesquisas recentes reconhecem e incluem tal característica à estimativa da demanda, mas há limitações referentes aos elementos básicos de tratamento utilizados nas abordagens. No intuito de superar alguns problemas e restrições associados aos estudos anteriores, o presente trabalho utiliza a dependência espacial entre as observações de viagens no intuito de gerar estimativas do volume de Embarques e Desembarques por ponto de parada, bem como Carregamento nos trechos, ao longo de uma linha de transporte público. Dados de uma pesquisa sobe/desce, realizada em oito linhas de ônibus da cidade de São Paulo, foram disponibilizados pela SPTrans, sendo que, selecionou-se a linha 856R-10 para compor uma análise do desempenho da Geoestatística, ferramental adequado para a estimativa de valores de variáveis em locais não amostrados, sobretudo em bancos de dados espacialmente dependentes. O processo de estimação foi realizado por meio da Krigagem Ordinária com distâncias euclidianas, técnica de interpolação geoestatística que, para sua aplicação, exige apenas o valor da variável em pontos do espaço e suas respectivas coordenadas geográficas. Posteriormente, tal método foi comparado às estimativas obtidas por meio da utilização de distâncias em rede ao longo da linha de ônibus. Os resultados obtidos, a partir da validação cruzada e métricas de aderência, apontaram um ajuste considerável dos valores observados e estimados para ambos os tipos de distância. Dessa forma, a investigação proposta confirmou, com sucesso, a viabilidade de aplicação da Geoestatística às variáveis de demanda por transporte público ao longo de uma linha de ônibus. Além disso, uma vez que a pesquisa sobe/desce exige recursos elevados para sua realização, os resultados destacam o potencial dos interpoladores geoestatísticos em eliminar a necessidade de execução do referido levantamento em todo o percurso da linha de ônibus, já que a Geoestatística garante estimativas aproximadas aos valores da pesquisa completa. / The classical modeling of travel demand overlooks an important aspect normally found in the variables of interest: spatial autocorrelation. Recent researches recognize and include this characteristic in travel demand forecasting, but there are limitations regarding the basic elements of treatment used in the approaches. In order to overcome some of the problems and constraints associated with previous researches, the present study relies on the spatial dependence between the observations of trips in order to generate estimates of the Boarding and Alighting passenger volume per bus stop and Loading in the stretches, along a public transport line, that would not be sampled for the survey occasion. Data from a passenger Boarding and Alighting survey carried out on eight bus lines in the city of São Paulo were made available by SPTrans, and line 856R-10 was selected to compose an analysis of the performance of Geostatistics, a tool that deals with the problem of scarce data and estimation in non-sampled places in the forecast of variables of public transport demand, especially in spatially dependent databases. The estimation process was performed by means of Ordinary Kriging with Euclidian distances, a geostatistical interpolation technique that, for its application, only requires the value of the variable in points of the space and their respective geographical coordinates. Subsequently, this method was compared to the estimates obtained through the use of network distances along the bus line. The results obtained, from cross-validation and measures of goodness-of-fit, indicated a considerable adjustment of the observed values to the estimated ones for both types of distance. Thus, the proposed research successfully confirmed the feasibility of applying Geostatistics to the variables of public transport demand along a bus transit line. Moreover, since the boarding/alighting survey requires high resources for its realization, the results highlight the potential of the geostatistical interpolators in eliminating the need to carry out the survey in the whole course of the bus line, since Geostatistics provides estimates similar to the values of the complete survey.
126

Spatial graphical models with discrete and continuous components

Che, Xuan 16 August 2012 (has links)
Graphical models use Markov properties to establish associations among dependent variables. To estimate spatial correlation and other parameters in graphical models, the conditional independences and joint probability distribution of the graph need to be specified. We can rely on Gaussian multivariate models to derive the joint distribution when all the nodes of the graph are assumed to be normally distributed. However, when some of the nodes are discrete, the Gaussian model no longer affords an appropriate joint distribution function. We develop methods specifying the joint distribution of a chain graph with both discrete and continuous components, with spatial dependencies assumed among all variables on the graph. We propose a new group of chain graphs known as the generalized tree networks. Constructing the chain graph as a generalized tree network, we partition its joint distributions according to the maximal cliques. Copula models help us to model correlation among discrete variables in the cliques. We examine the method by analyzing datasets with simulated Gaussian and Bernoulli Markov random fields, as well as with a real dataset involving household income and election results. Estimates from the graphical models are compared with those from spatial random effects models and multivariate regression models. / Graduation date: 2013
127

Testing for spatial correlation and semiparametric spatial modeling of binary outcomes with application to aberrant crypt foci in colon carcinogenesis experiments

Apanasovich, Tatiyana Vladimirovna 01 November 2005 (has links)
In an experiment to understand colon carcinogenesis, all animals were exposed to a carcinogen while half the animals were also exposed to radiation. Spatially, we measured the existence of aberrant crypt foci (ACF), namely morphologically changed colonic crypts that are known to be precursors of colon cancer development. The biological question of interest is whether the locations of these ACFs are spatially correlated: if so, this indicates that damage to the colon due to carcinogens and radiation is localized. Statistically, the data take the form of binary outcomes (corresponding to the existence of an ACF) on a regular grid. We develop score??type methods based upon the Matern and conditionally autoregression (CAR) correlation models to test for the spatial correlation in such data, while allowing for nonstationarity. Because of a technical peculiarity of the score??type test, we also develop robust versions of the method. The methods are compared to a generalization of Moran??s test for continuous outcomes, and are shown via simulation to have the potential for increased power. When applied to our data, the methods indicate the existence of spatial correlation, and hence indicate localization of damage. Assuming that there are correlations in the locations of the ACF, the questions are how great are these correlations, and whether the correlation structures di?er when an animal is exposed to radiation. To understand the extent of the correlation, we cast the problem as a spatial binary regression, where binary responses arise from an underlying Gaussian latent process. We model these marginal probabilities of ACF semiparametrically, using ?xed-knot penalized regression splines and single-index models. We ?t the models using pairwise pseudolikelihood methods. Assuming that the underlying latent process is strongly mixing, known to be the case for many Gaussian processes, we prove asymptotic normality of the methods. The penalized regression splines have penalty parameters that must converge to zero asymptotically: we derive rates for these parameters that do and do not lead to an asymptotic bias, and we derive the optimal rate of convergence for them. Finally, we apply the methods to the data from our experiment.
128

Testing for spatial correlation and semiparametric spatial modeling of binary outcomes with application to aberrant crypt foci in colon carcinogenesis experiments

Apanasovich, Tatiyana Vladimirovna 01 November 2005 (has links)
In an experiment to understand colon carcinogenesis, all animals were exposed to a carcinogen while half the animals were also exposed to radiation. Spatially, we measured the existence of aberrant crypt foci (ACF), namely morphologically changed colonic crypts that are known to be precursors of colon cancer development. The biological question of interest is whether the locations of these ACFs are spatially correlated: if so, this indicates that damage to the colon due to carcinogens and radiation is localized. Statistically, the data take the form of binary outcomes (corresponding to the existence of an ACF) on a regular grid. We develop score??type methods based upon the Matern and conditionally autoregression (CAR) correlation models to test for the spatial correlation in such data, while allowing for nonstationarity. Because of a technical peculiarity of the score??type test, we also develop robust versions of the method. The methods are compared to a generalization of Moran??s test for continuous outcomes, and are shown via simulation to have the potential for increased power. When applied to our data, the methods indicate the existence of spatial correlation, and hence indicate localization of damage. Assuming that there are correlations in the locations of the ACF, the questions are how great are these correlations, and whether the correlation structures di?er when an animal is exposed to radiation. To understand the extent of the correlation, we cast the problem as a spatial binary regression, where binary responses arise from an underlying Gaussian latent process. We model these marginal probabilities of ACF semiparametrically, using ?xed-knot penalized regression splines and single-index models. We ?t the models using pairwise pseudolikelihood methods. Assuming that the underlying latent process is strongly mixing, known to be the case for many Gaussian processes, we prove asymptotic normality of the methods. The penalized regression splines have penalty parameters that must converge to zero asymptotically: we derive rates for these parameters that do and do not lead to an asymptotic bias, and we derive the optimal rate of convergence for them. Finally, we apply the methods to the data from our experiment.
129

Spatial Analysis of Fatal Automobile Crashes in Nashville, TN, 2001-2011

Chen, Yan 01 December 2013 (has links)
With increasing levels of motor vehicle ownership, automobile crashes have become a serious public issue in the U.S. and around the world. Knowing when, where, and how traffic accidents happen is critical in order to ensure road safety and to plan for adequate road infrastructure. There is a rich body of literature pertaining to time-related fatal crashes, most of which focuses on non-spatial factors such as a driver’s visibility at night, drinking and drug use, and road conditions. These studies provide a theoretical basis for understanding the causes of crashes from a non-spatial perspective, and a number of traffic laws and policies consequently have been enacted to minimize the impacts of non-spatial factors. Over the past few years, advances in Geographic Information Systems (GIS) have greatly enhanced our ability to analyze traffic accidents from a spatial perspective. This study aims to fill a void in traffic safety studies by comparing and analyzing the differences in the spatial distribution of fatal crashes based on temporal factors, specifically in three periods: 1) day and night; 2) A.M. rush hours and P.M. rush hours; and 3) weekdays and weekends. With the Nashville Metropolitan Area as the study area, the research utilized a number of spatial point-pattern analysis (SPPA) methods, including planar KDE, planar global auto K function, network global cross K functions, and network local cross K functions. All fatal crashes in the Nashville area were found to be clustered and generally follow the patterns of average daily traffic flow. All time-based subtypes of fatal crashes also were found to be concentrated within the central urban area of Nashville, mostly along major roads, and especially near major road intersections and highway interchanges. No notable spatial differences were detected among the subtypes of fatal crashes when applying network global cross K function. However, with the help of the network local cross K function, some localized spatial differences were identified. Some specific locations of hotspots of nighttime and P.M. rush hour fatal crashes were found not to be at the same locations as those at of daytime and A.M. rush hour fatal crashes, respectively. The approach adopted in this study not only provides a new way to analyze spatial distribution of spatial point events such as fatal crashes, but it also can be applied readily to real-world applications. A good understanding of where these spatial differences are should help various agencies practice effective measures and policies in order to improve road conditions, reduce traffic accidents, and ensure road safety.
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Experimental neuropsychological tests of feature ambiguity, attention and structural learning : associations with white matter microstructural integrity in elderly with amnesic and vascular mild cognitive impairment.

Young, Bob Neill January 2014 (has links)
Mild cognitive impairment (MCI) is a transition phase between normal aging and Alzheimer’s disease. Individuals with MCI show impairment in cognition as well as corresponding damage to areas of their brain. Performance on tasks such as discriminating objects with ambiguous features has been associated with damage to the perirhinal cortex, while scenes with structural (spatial) elements have been associated with damage to the hippocampus. In addition, attention is regarded as one of the first non-memory domains to decline in MCI. A relatively new MRI technique called diffusion tensor imaging (DTI) is sensitive to white matter microstructural integrity and has been associated with changes due to cognitive decline. 18 MCI (14 amnesic, 4 vascular) and 12 healthy matched controls were assessed in feature ambiguity, attention and structural learning to assess associated deficits in MCI. Associations with white matter microstructural integrity were then investigated. The MCI groups were discovered to perform worse than controls on the test of structural learning. In addition, altered attention networks were found in MCI and were associated with white matter microstructural integrity. No significant differences were found for feature ambiguity. These findings suggest there may be specific damage to the hippocampus while the perirhinal cortex may be preserved in MCI. Furthermore, dysfunction in attention was found to be associated with white matter microstructural integrity. These experimental tests may be useful in assessing dysfunction in MCI and identifying degeneration in white matter microstructural integrity. Further studies with larger sample sizes are needed to validate these findings.

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