abstract: As more and more stadia structures nowadays are being built by making use of new high strength building materials which tend to be lighter than the "old" ones, composite systems and also the fact that engineers, contractors and clients want their structures as optimized as possible, in terms of minimal materials used, there is an inevitable side effect that comes with this. The result is that structures are more flexible, and thus they become susceptible to undergone vibration problems due to the action of dynamic loading. Pop/rock concerts, exhibitions, boxing matches, and so forth are staged to supplement the football/sport seasons. Consequently, stadia structures must resist not only static loading, but also dynamic loading, such as the human induced loads from various activities of the spectators which include, standing, jumping, stamping, clapping and dancing, particularly in response to touchdowns (in football matches) or musical beats (during concerts). Active and passive models of humans are studied to see how they influence the response in TCF Bank Stadium for different ranges in excitation frequencies, by performing dynamic analyses and comparing the results with the ones obtained from static analysis. Parameter estimation and system identification in mechanical sciences and structural engineering have become increasingly important areas of research in the last three decades. Many nondestructive testing methods are based on the concepts of system identification and parameter estimation. In this document, two parameter estimation algorithms are studied, namely the Equation Error Estimator and the Output Error Estimator, through the simulation of modal data obtained from a computer structural analysis program and comparisons of their results are presented so that future researchers are better informed about the two and therefore can decide which one would give the best results for their application. / Dissertation/Thesis / M.S. Civil and Environmental Engineering 2014

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<p>Recent advances in gene targeting technology have significantly shaped modern-day mouse genetics, as they allow for the accurate analysis of gene function <em>in vivo</em>. By capitalizing on conventional methodologies that are based on homologous recombination, the advent of artificially engineered nucleases, like transcription activator-like effector nucleases (TALENs), enables precise genome editing without the need for conventional targeting vectors, which typically possess long “arms” of homology that are difficult to work with, even with recombineering strategies employing bacterial artificial chromosomes. Unlike traditional techniques, these novel nucleases can be engineered in less than a week and together with compact targeting vectors, can be used to easily manipulate almost any locus in the mouse genome.</p> <p>The current selection of commercially available antibodies makes it difficult to assess the specific roles of protein isoforms during early development. The Tcf/Lef family of transcription factors comprise of key downstream effector proteins of the canonical Wnt/β-catenin signal transduction cascade. This pathway is implicated in the regulation of self-renewal and is dysregulated in a number of human diseases including cancers. Among the Tcf/Lef factors, Tcf3 has been heavily studied in mouse embryonic stem cells, due at least in part to the observation that its transcript levels are expressed at the highest levels compared to the others. Recently, it was proposed that a switch takes place between a repressive state mediated by Tcf3 to an activating β-catenin-Tcf1 complex in response to Wnt signals. Here, we use TALEN technology to introduce an epitope tag at the endogenous locus of <em>mTcf7</em>, the gene encoding the Tcf1 protein. By tagging the N-terminus of full-length and N-terminally truncated dominant-negative variants of Tcf1, we establish a tool to better study a previously unappreciated role for Tcf1 in regulating embryonic stem cell self-renewal and differentiation. Furthermore, we also show that the tagged variants generated exhibit similar protein expression levels to those of wild-type controls, and display nuclear localization as expected.</p> / Master of Science (MSc)

Wnt signalling represents an important mechanism participating in control of cellular and developmental processes, including establishment of cell polarity, cell fate specification, stem cell self-renewal, tissue patterning and organogenesis, homeostasis maintenance and regeneration. Misregulation of the Wnt signalling during embryogenesis leads to developmental defects while aberrant activation later in development is associated with degenerative diseases and a number of cancers. The presented PhD thesis is based on four original publications that deal with the post-translational modifications of Wnt ligands and molecular mechanisms contributing to the regulation of a transcriptional profile of the so-called canonical Wnt pathway. Wnt signalling pathway is used repetitively both in time and different cellular contexts throughout development of multicellular organisms. Inevitably, in each single situation -catenin/TCF complexes, the downstream effectors, induce only subsets of all potential target genes. How this differential tissue- and stage-specific control over various subsets of target genes is achieved with such a limited number of nuclear effectors is not fully understood. Along with the expression of specific LEF/TCF family members or their variants containing different functional domains...

Os polimorfismos do gene TCF7L2 têm sido fortemente associados com risco de desenvolvimento de diabetes mellitus em populações de diversas origens étnicas. No presente estudo, investigou-se se esta associação se confirma em diferentes populações brasileiras e qual seu efeito sobre o desempenho de um modelo de predição de risco de diabetes mellitus quando a informação genética foi acrescentada às variáveis clínicas e laboratoriais iniciais. Concluiu-se que, apesar de haver sido confirmado a associação do polimorfismo rs7903146 ao diabetes tipo 2 na população brasileira, a inclusão desta informação no modelo teve desempenho equivalente ao modelo baseado unicamente em variáveis clínicas. / Recently, polymorphisms of gene TCF7L2 have been strongly associated with Type 2 Diabetes risk in populations of diverse genetic backgrounds. In this study we investigated if this association is present in different Brazilian populations and how the inclusion of genetic information to a diabetes risk prediction model based on clinical and laboratorial variables would affect its would affect its performance. We concluded that, even though the TCF7L2 rs7903146 polimorphism is associated to Type 2 Diabetes risk in the Brazilian population, that inclusion of such information to a diabetes risk prediction model based on clinical variables lead to equivalent performance.

This dissertation reports very novel solutions for the trimming and compensation of various parameters of silicon micromechanical resonators and resonator-arrays. Post-fabrication trimming of resonance frequency to a target value is facilitated by diffusing in a deposited thin metal layer into a Joule-heated silicon resonator. Up to ~400 kHz of trimming-up and trimming-down in a 100 MHz Silicon Bulk Acoustic Resonators (SiBARs) are demonstrated via gold and aluminum diffusion respectively. The dependence of the trimming range on the duration of Joule heating and value of current passed are presented and the possibility of extending the trimming range up to ~4 MHz is demonstrated. Passive temperature compensation techniques are developed to drastically reduce the temperature coefficient of frequency (TCF) of silicon resonators. The dependence of TCF on the charge carriers in silicon are extensively studied and exploited for the very first time to achieve temperature compensation. A charge surplus via degenerate doping using boron and aluminum is shown to reduce a starting TCF of -30 ppm/°C to -1.5 ppm/°C while a charge depletion effected by creating multiple pn-junctions reduces the TCF to -3 ppm/°C. Further, shear acoustic waves in silicon microresonators have also been identified to effect a TCF reduction and have been excited in a concave SiBAR (or CBAR) to exhibit a TCF that is 15 ppm/°C lesser than that of a conventional rectangular SiBAR. The study on quality factor (Q) sensitivity to the various crystallographic axis of transduction in silicon resonators show that the non-repeatability of Q across various fabrication batches are due to the minor angular misalignment of ≤ 0.5° during the photolithography processes. Preferred axes of transduction for minimal misalignment sensitivity are identified and novel low-loss resonator-array type performances are also reported from a single resonator while transduced along certain specific crystallographic axes. Details are presented on an unprecedented new technique to create and fill charge traps on the silicon resonator which allows the operation of the capacitive SiBARs without the application of any polarization voltages (Vp) for the first time, making them very attractive candidates for ultra-low-power oscillator and sensor applications. Finally, a fabrication process that integrates both the capacitive and piezoelectric actuation/sensing schemes in microresonators is developed and is shown to compensate for the parasitics in capacitive silicon resonators while maintaining their high-Q.

Os polimorfismos do gene TCF7L2 têm sido fortemente associados com risco de desenvolvimento de diabetes mellitus em populações de diversas origens étnicas. No presente estudo, investigou-se se esta associação se confirma em diferentes populações brasileiras e qual seu efeito sobre o desempenho de um modelo de predição de risco de diabetes mellitus quando a informação genética foi acrescentada às variáveis clínicas e laboratoriais iniciais. Concluiu-se que, apesar de haver sido confirmado a associação do polimorfismo rs7903146 ao diabetes tipo 2 na população brasileira, a inclusão desta informação no modelo teve desempenho equivalente ao modelo baseado unicamente em variáveis clínicas. / Recently, polymorphisms of gene TCF7L2 have been strongly associated with Type 2 Diabetes risk in populations of diverse genetic backgrounds. In this study we investigated if this association is present in different Brazilian populations and how the inclusion of genetic information to a diabetes risk prediction model based on clinical and laboratorial variables would affect its would affect its performance. We concluded that, even though the TCF7L2 rs7903146 polimorphism is associated to Type 2 Diabetes risk in the Brazilian population, that inclusion of such information to a diabetes risk prediction model based on clinical variables lead to equivalent performance.

Thesis (Ph.D.)--University of Alabama at Birmingham, 2009. / Title from PDF title page (viewed on Feb. 3, 2010). Includes bibliographical references.

DYRK1A is the most studied member of the DYRK family of protein kinases, because is one of the human chromosoma 21 proteins for which changes in gene dosage result in neuropathological alterations. DYRKs are activated by autophosphorylation on a tyrosine residue in the activation loop, a one-off event that takes place during translation. Accordingly, DYRK1A would be constitutively active once is synthesized. However, DYRK1A is extremely sensitive to gene dosage, and thus it is predictable that not only its activity but also its actual protein amounts have to be tightly regulated by mechanisms not yet characterized. In the present study, the protein kinase NLK has been identified as a novel regulator of DYRK1A protein stability. DYRK1A interacts with NLK in physiological conditions. The interaction results in the phosphorylation of DYRK1A at multiple sites, which have been identified by mass spectrometry analysis. These phosphorylation events promote DYRK1A proteasome-dependent degradation. Moreover, DYRK1A degradation is induced by stimulating cells with Wnt1 or Wnt3a, or overexpressing elements of the Wnt signaling cascade such as the Frizzled-1 receptor or NLK activators such as HIPK2. In addition, DYRK1A interacts with and phosphorylates -catenin and TCF-4 and enhances -catenin-dependent transcriptional activity, at least by phosphorylation of -catenin. Thus, these results suggest that DYRK1A acts as a positive factor in the Wnt--catenin signaling pathway and NLK acts as a negative regulator by targeting both DYRK1A and TCF/LEF transcription factors for proteasome-mediated degradation. / DYRK1A es el miembro más estudiado de la familia de proteína quinasas DYRK, porque es una de las proteínas de la cromosoma humano 21 para la que cambios en la dosis génica dan lugar a alteraciones neuropatológicas. Las quinasas DYRK se activan por autofosforilación en un residuo tirosina localizado en el lazo de activación, un evento único que ocurre durante la traducción. Como consecuencia, DYRK1A sería constitutivamente activa una vez se ha sintetizado. Sin embargo, DYRK1A es extremadamente sensible a la dosis génica, y por tanto es predecible que no sólo su actividad, pero también los niveles de proteína han de estar estrictamente controlados por mecanismos reguladores que todavía no han sido caracterizados. En este trabajo, la proteína quinasa NLK ha sido identificada como un nuevo regulador de la estabilidad de DYRK1A. DYRK1A interacciona con NLK en condiciones fisiológicas, y la interacción tiene como resultado la fosforilación de DYRK1A en residuos serina/treonina, varios de los cuales han sido identificados por espectrometría de masas. La interacción con NLK y la subsecuente fosforilación promueven la degradación de DYRK1A vía el proteasoma. Además, la degradación de DYRK1A es inducida por estimulación de la células con Wnt1 o Wnt3a, o por sobreexpresión de miembros de la cascada de señalización de Wnt, como el receptor Frizzled-1 o de un activador de NLK como HIPK2. Finalmente, se ha demostrado que DYRK1A se une y fosforila -catenina y TCF-4. La fosforilación de, al menos, -catenina es responsable del incremento de la actividad transcripcional dependiente de esta proteína en presencia de DYRK1A. Todos estos resultados sugieren que DYRK1A actúa como un factor positivo en la vía de señalización Wnt--catenina y NLK actúa como un regulador negativo al inducir la degradación vía proteasoma no sólo de los factores de transcripción TCF/LEF sino también del modulador positivo DYRK1A.

Differentiation of the head ectoderm is crucial for the evolutionary diversification of vertebrates. Expression of the genes responsible for this process is orchestrated troughout complex gene regulatory networks that are induced and modulated by Wnt, FGF and BMP signaling pathways. In addition, Wnt/β-catenin signaling, in combination with expression of the Wnt antagonists from the rostral-most part of the head ectoderm, represent a key source of information for the regionalization of the tissue along the antero-posterior axis. This allows the differentiation of the anterior ectoderm that gives rise to the anterior neural fold (ANF) and anterior part of the presumptive placodal region (PPR), and more posterior ectoderm where higher levels of active Wnt/β-catenin signaling promote differentiation into the neural crest (NC) and posterior PPR. Although the requirement of Wnt/β-catenin signalling for ANF, PPR and NC development has been intensively studied in non-mammalian vertebrate model organisms, we lack a clear picture about the situation in mammals. Furthermore, current knowledge in mammals has been gathered via experiments on the level of β-catenin and very little is known about the individual roles of the Tcf/Lef transcription factors. Thereby, we decided to manipulate the Tcf7l1, member of the...