The petroleum engineering literature clearly shows that large proppant volumes and concentrations are required to effectively stimulate low-permeability gas sands. To pump large proppant concentrations, one must use a viscous fluid. However, many operators believe that low-viscosity, low-proppant concentration fracture stimulation treatments known as ??waterfracs?? produce comparable stimulation results in low-permeability gas sands and are preferred because they are less expensive than gelled fracture treatments. This study evaluates fracture stimulation technology in tight gas sands by using case histories found in the petroleum engineering literature and by using a comparison of the performance of wells stimulated with different treatment sizes in the Cotton Valley sands of the East Texas basin. This study shows that large proppant volumes and viscous fluids are necessary to optimally stimulate tight gas sand reservoirs. When large proppant volumes and viscous fluids are not successful in stimulating tight sands, it is typically because the fracture fluids have not been optimal for the reservoir conditions. This study shows that waterfracs do produce comparable results to conventional large treatments in the Cotton Valley sands of the East Texas basin, but we believe it is because the conventional treatments have not been optimized. This is most likely because the fluids used in conventional treatments are not appropriate or have not been used appropriately for Cotton Valley conditions.

Ce travail de thèse consiste à identifier les propriétés pétrophysiques et de transfert de roches provenant d’un réservoir de grès « tight » en Afrique du nord exploité par ENGIE EPI. Il s’agit d’identifier les liens entre les propriétés de transfert, les propriétés poro-mécanique, la sensibilité au chargement mécanique ou à la saturation en eau, et quelques indicateurs comme la porosité, la distribution des tailles de pores, la perméabilité intrinsèque, les caractéristiques pétrographiques etc. Le but est de pouvoir prédire le comportement de matériaux différents de ceux étudiés dans cette thèse, en utilisant des données d’entrée « facilement » accessibles, fournissant ainsi des outils permettant d’évaluer la qualité d’un nouveau réservoir sans passer par une caractérisation exhaustive, longue et couteuse du matériau constituant ce réservoir / This work of thesis focuses on the identification of the petrophysical and transfer properties of rocks originating from a tight sandstone reservoir in North Africa operated by ENGIE EPI. It needs to identify the links between the transfer properties, poro-mechanical properties, sensitivity to mechanical loading or water saturation, and some indications such as porosity, pore size distribution, intrinsic permeability, petrographic features etc. The aim is to predict the behavior of materials that are different from those that studied in this thesis by using the “easily” accessible input data, providing tools for evaluating the quality of a new reservoir without passing through an exhaustive, long and expensive characterization of the material forming this reservoir.

A injúria ao epitélio intestinal é uma das mais importantes complicações da sepse, associada à perda da integridade da barreira epitelial intestinal pela alteração da expressão de proteínas constituintes das tight junctions (TJ). Os dois subtipos de receptores de estrógeno são normalmente expressos na mucosa intestinal, sendo responsável pela manutenção da arquitetura do epitélio intestinal. Além disso, diversos modelos experimentais fisiopatológicos têm atribuído um papel imunomodulador ao estradiol. O objetivo do presente estudo foi avaliar a participação do estradiol na modulação da resposta inflamatória e na proteção da barreira epitelial intestinal durante a inflamação sistêmica induzida por lipopolissacarídeo (LPS; 1,5 mg/kg, i.v.) em ratas. As ratas foram ovariectomizadas e mantidas para recuperação durante 10-12 dias antes do experimento. Por três dias consecutivos, as ratas foram tratadas com cipionato de estradiol (50 ou 100 µg/kg, s.c.) ou óleo. Após 6h da indução da endotoxemia, foram avaliadas a permeabilidade intestinal pela injeção de dextrana FITC no íleo ou cólon, a translocação bacteriana nos linfonodos mesentéricos e as citocinas no plasma e na mucosa intestinal. Adicionalmente, a infiltração de mastócitos e neutrófilos foi avaliada no íleo e no cólon, a integridade das TJ e junções aderentes (JA) foi determinada por microscopia eletrônica de transmissão, e expressão das proteínas (ocludina, claudina-1, JAM-A, E-caderina) bem como suas localizações. Nossos resultados demonstraram que o estradiol reduziu a permeabilidade intestinal bem como preveniu a translocação bacteriana nos linfonodos mesentéricos induzidas pela administração de LPS. Em ratas endotoxêmicas tratadas com estradiol, as concentrações das citocinas pró-inflamatórias (TNF?, IL-6, IFN-? e IL-1?), migração de neutrófilos (atividade da mieloperoxidase) e degranulação dos mastócitos no íleo e no cólon foram reduzidas. O estradiol também reverteu a disfunção da barreira epitelial induzida pelo LPS, aumentando a expressão das proteínas das TJ, reduzindo a abertura das TJ e JA e atenuando os danos histológicos. Em conjunto, os resultados sugerem um papel protetor do estradiol, prevenindo a disfunção da barreira epitelialintestinal induzida pela inflamação sistêmica, possivelmente modulando a resposta inflamatória e a liberação de proteases de mastócitos. / Intestinal injury is one of the most important complications of sepsis, associated with the loss of integrity of the intestinal epithelial barrier due to the alteration of the expression of proteins that constitute the tight junctions (TJ). The two subtypes of estrogen receptors are normally expressed in the intestinal mucosa, being responsible for maintaining the architecture of intestinal epithelium. Moreover, several experimental pathophysiological models have been attributed the immunomodulatory role for the estradiol. The aim of the present study was to evaluate the role of estradiol in the modulation of the inflammatory response and the protection of the intestinal epithelial barrier during systemic inflammation induced for lipopolysaccharide (LPS, 1.5 mg / kg, i.v.) in rats. The female rats were ovariectomized and allowed to recover for 10-12 days before the experiment. For three consecutive days, rats were pretreated with estradiol cypionate (50 or 100 µg/kg, subcutaneous) or corn oil. At 6h after of endotoxemia induction, were evaluated the intestinal permeability by injecting FITC dextran into the ileum or colon, bacterial translocation in the mesenteric lymph nodes and plasma and intestinal mucosa cytokines levels. In addition, the infiltration of mast cells and neutrophils was evaluated in the ileum and colon, the integrity of the TJ and adherent junctions (JA) integrity was determined by transmission electron microscopy, and the protein expression (occludin, claudin-1, JAM-A, E-cadherin) as well as their localization. Our results demonstrated that estradiol reduced intestinal permeability as well as prevented bacterial translocation in the mesenteric lymph nodes induced by the LPS administration. In the endotoxemic rats treated with estradiol, the concentration of proinflammatory cytokines (TNF?, IL-6, IFN-? e IL-1?), neutrophil infiltration (myeloperoxidase activity), and mast cells degranulation were reduced in the ileum and colon. Estradiol also reverted the LPS-induced epithelial barrier dysfunction, increasing the expression of the TJ proteins, reducing TJ and AJ opening and attenuating the histological damages. Together, these results suggest a protective role for estradiol, attenuating damage to the intestinal epithelium induced by systemic inflammation, possibly due to modulation of the inflammatory response and the release of mast cells proteases.

Die größte Proteinfamilie des TJ-Komplexes stellen die 27 bisher beim Säuger bekannten Claudine dar. Claudin-3 (CLDN3) ist ein ubiquitär exprimiertes TJ-Protein, dessen Rolle in vivo jedoch unbekannt ist. Um Einblicke in dessen physiologische Funktion zu bekommen, wurde für diese Arbeit ein Claudin-3-defizientes Mausmodell mittels der konditionalen Gentargeting-Technologie generiert. Zur Erstellung des Targetingvektors wurde eine „Recombineering“-basierte Methode ausgewählt. Die Cldn3-deletierten Mäuse waren lebensfähig und in der Lage sich fortzupflanzen. Jedoch unterlag die Genotypverteilung aus den Verpaarungen heterozygoter Tiere nicht den Mendelschen Regeln. Es wurden weniger Cldn3(-/-) Tiere geboren. Funktionelle Analysen von Leber und Nieren, mit Ausnahme eines erhöhten Urin pH-Wertes, lieferten keine Auffälligkeiten. Elektrophysiologische Analysen am Colon zeigten keine Unterschiede zwischen Cldn3(-/-) und Cldn3(+/+) Mäusen. Der transepitheliale Widerstand, die Permeabilität für Natrium- und Chloridionen sowie für große ungeladene Moleküle waren in den Knockout-Mäusen unverändert. Die histologische Auswertung von Speicheldrüse, Niere und Leber zeigte jedoch bei alternden Tieren eine vermehrte Migration von Zellen lymphatischen Ursprungs ins Gewebe. Die Infiltrate waren zum größten Teil perivaskulär lokalisiert und weisen eine follikelähnliche Form auf. Immunohistologische Färbungen identifizierten die Zellen als T- und B-Zellen. Microarray-basierte Transkriptomanalysen in acht Wochen alten Tiere zeigten, dass vermutlich andere Claudine den Verlust von Cldn3 kompensieren. In der Leber wurden neben differenziell regulierten TJ-Proteinen auch Transkripte identifiziert, die mit der Zelladhäsion, Zellkommunikation und Signalweitergabe assoziiert sind. Die ersten Daten des Cldn3-Defizienzmodells liefern eine interessante Basis für weitere Studien in eine ganz neue Richtung. / Claudins are the largest and most important protein family within the TJ. Claudin-3 (CLDN3) is a ubiquitously expressed TJ protein, which functional role in vivo is still unknown. To gain insight into its physiological function a claudin-3 deficient mouse model has been generated using the conditional gene targeting technology. A "recombineering"-based method was chosen to create the targeting vector. The Cldn3 deficient mice were viable and fertil. Genotype distribution from hereozygous mating did not follow Mendelian rules: fewer Cldn3(-/-) animals were born and possible pointing at a prenatal lethality. Functional studies of liver and kidney, with the exception of elevated urine pH, revealed no abnormalities. Electrophysiological analyzes on colon shown no differences between the Cldn3(-/-) and Cldn3(+/+) mice. The transepithelial resistance, the permeability of sodium and chloride as well as uncharged molecules were unchanged in the knockout mice. Histological analyses of salivary gland, kidney and liver in aging animals showed an increased migration of cells with lymphathic origin into the tissue. The infiltrates were mostly localized perivascular and have a follicle form and would be identified as T- and B-lymphocytes via immunohistological analysis. Microarray-based analyses of eight week old animals suggest, that other Claudins are differentially expressed, thereby compensating for the loss of Cldn3. In the liver we identified differentially regulated TJ proteins, as well as deregulated transcripts that are associated with cell adhesion, cell communication and signal transduction. The first data of the Cldn3 knockout mouse model showed this a basis for further studies in a novel direction.

Die Epithelien vielzelliger Organismen bilden eine funktionelle Grenzschicht, die für die Homöostase innerhalb und für den spezifischen Stoffaustausch zwischen den Kompartimenten verantwortlich ist. Der interzelluläre Spalt zwischen Epithelzellen wird durch tight junctions verschlossen, die eine selektive Permeabilitätsbarriere bilden. Da viele Krankheiten auf eine Dysfunktion der Barriere zurückzuführen sind, ist eine genaue Kenntnis der molekularen Zusammensetzung der tight junctions aus pharmakologischer Sicht von großem Interesse. In dieser Arbeit wurden Anreicherungsstrategien entwickelt, die eine Proteomanalyse der tight junction-Proteine erlauben. Der Fokus wurde dabei auf die Claudine und Tricellulin gelegt, die als transmembranale Proteine das molekulare Rückgrat der tight junctions bilden. Durch Affinitätsreinigung gelang erstmals eine Anreicherung verschiedener Claudine, die durch Massenspektrometrie identifiziert wurden. Die metabolische Markierung der Proteine mit stabilen Isotopen (SILAC) erlaubte die quantitative Diskriminierung von Proteinen, die unspezifisch an das Matrixmaterial banden. Von den potentiellen Interaktionspartnern der Claudine wurden Integrin-a3, SUMO-1 und Sphingosinkinase 2 ausgewählt, um deren Interaktion mit Claudinen weiter zu verifizieren. Es wurden keine Hinweise auf Wechselwirkungen zwischen Claudinen und Integrin-a3 sowie SUMO-1 gefunden, während die Interaktion von Claudinen mit Sphingosinkinase 2 weder bestätigt noch ausgeschlossen werden konnte. Ferner wurde eine Affinitätsreinigung durchgeführt, um Interaktionspartner von Tricellulin anzureichern. Durch die quantitative massenspektrometrische Analyse wurde ausschließlich Claudin-4 nicht aber Claudin-3 und 7 als potentieller, spezifischer Interaktionspartner von Tricellulin identifiziert. Es wurde aber gezeigt, dass die Kombination aus Affinitätsreinigung und quantitativer Massenspektrometrie einen wertvollen Beitrag zur Entschlüsselung von Protein-Komplexen leisten kann. / Epithelia function as specialized barriers that separate different compartments within multicellular organisms and regulate the specific exchange of substances between them. The intercellular space between adjacent epithelial cells is sealed by tight junctions forming a permeability barrier. Dysregulation of the barrier occurs in a variety of diseases. Hence, a deeper knowledge is required of the molecular composition of tight junctions, in particular with respect to pharmacological applications. In the present study, new enrichment strategies have been established that allow the proteomic analysis of tight junction proteins. Special emphasis was placed on claudins and tricellulin as these transmembrane proteins constitute the molecular backbone of the tight junctions. For the first time, using an affinity purification, the enrichment of several claudins was accomplished that were identified by mass spectrometry. The metabolic labeling of proteins with stable isotopes (SILAC) allowed the quantitative discrimination of proteins that bound unspecifically to the matrix. Integrin-a3, SUMO 1 and sphingosin kinase 2 were chosen for further verifications from the proteins considered to potentially interact with claudins. While there was no evidence for an association of claudins with integrin-a3 and SUMO-1, an interaction of claudins with sphingosin kinase 2 could be neither confirmed nor disproved. Furthermore, an affinity purification was performed in order to enrich interaction partners of tricellulin. Claudin-4 was identified as a specific, potential interaction partner of tricellulin by quantitative mass spectrometric analysis whereas claudin 3 and -7 were determined to be enriched unspecifically. The present study demonstrates that a combination of affinity purification and quantitative mass spectrometry can substantially contribute to the elucidation of protein complexes.

In multizellulären Organismen bilden Epithel- und Endothelzellen die äußere Begrenzung innerer und äußerer Körperoberflächen bzw. kleiden die Blutgefäße aus. So schaffen sie abgegrenzte Organkompartimente mit individuellen, der jeweiligen Funktion angepassten Bedingungen. Dazu muss die parazelluläre Diffusion von Stoffen eingeschränkt werden. Die Abdichtung des parazellulären Spalts erfolgt durch tight junctions (TJ). Claudine (Cld) bilden das strukturelle Rückgrat der TJ. Im Rahmen dieser Arbeit wurde erstmalig gezeigt, dass einzelne Aminosäuren der zweiten extrazellulären Schleife (2. EZS) eines Claudins für die parazelluläre Dichtigkeit essentiell sind. Da endogene TJ-Stränge fast ausschließlich aus mindestens zwei verschiedenen Claudinen aufgebaut sind, wurde die Wirkung von Aminosäuresubstitutionen in der 2. EZS von Cld5 auf die parazelluläre Dichtigkeit in einer claudinheterogenen Umgebung analysiert. Dafür wurden verschiedene Cld5-Mutanten stabil in MDCK-II-Zellen exprimiert. Die Aminosäuresubstitutionen in der 2. EZS von Cld5 führten nicht nur zum Verlust der durch Cld5wt bedingten parazellulären Abdichtung, sondern darüber hinaus zu einer geringeren parazellulären Dichtigkeit im Vergleich zur Vektorkontrolle. In einem weiteren Teil dieser Arbeit wurde mit einem Peptid, dessen Sequenz der C-terminalen Hälfte der 1. EZS von Cld1 entsprach (Cld153-81), eine reversible Öffnung der TJ von epithelialen Zelllinien erzielt. Mit dem N-terminal verkürzten Clostridium perfringens Enterotoxin-Fragment CPE194-319 wurde ebenfalls eine Reduktion der parazellulären Dichtigkeit von Epithelzellen erzielt. Insgesamt tragen die Untersuchungen dieser Arbeit zu einem besseren Verständnis der durch Claudine vermittelten Abdichtung des parazellulären Spalts bei. Darüber hinaus bieten Cld153-81 und CPE194-319 neue Perspektiven für eine gezielte therapeutische Öffnung der TJ, um beispielsweise die Wirkstoffzufuhr ins Gehirn zu verbessern. / Epithelial and endothelial cells form the external lining of outer and inner body surfaces and blood vessels of multicellular organisms. Thus, they create separate compartments each exhibiting an environment optimally adjusted to their respective function. To build up such compartments epithelial and endothelial cells have to restrict the paracellular diffusion of substances. The paracellular cleft is sealed by tight junctions (TJ). In electron microscopical images TJs appear as a network of intermembranous strands in the apical region of the lateral cell membrane of epithelial and endothelial cells. Claudins (Cld) form the structural backbone of TJs. The present study provided evidence for the first time that single amino acids of the second extracellular loop (ECL) of a claudin are essential for the paracellular tightness of epithelial cells. The effect of single amino acid substitutions of the second ECL of Cld5 were studied in cells expressing various other endogenous claudins except Cld5. Point mutants of Cld5 were stably expressed in MDCK-II cells. While the expression of Cld5wt caused increased paracellular tightness, this effect was completely abolished by the Cld5 point mutants. Furthermore, the mutants even decreased the paracellular permeation of certain substances compared with the vector control. Further findings of the present study demonstrated that a peptide corresponding to the C-terminal half of the first ECL of Cld1 is capable of opening the TJ in a reversible manner. Using an N-terminal fragment of clostridium perfringens enterotoxin (CPE194-319) a reduction of the paracellular tightness of epithelial cells was demonstrated. Taken together, the findings of the present study contribute to a better understanding of the sealing of the paracellular cleft by claudins. Furthermore, Cld153-81 und CPE194-319 open new perspectives for a targeted therapeutic opening of the TJs suited for enhancing the transport of active substances into diseased tissue.

Chronisch entzündliche Darmerkrankungen stellen eine Gruppe von chronischen, häufig in Schüben verlaufenden Erkrankungen mit rezidivierenden Entzündungen des Gastrointestinaltraktes dar. Es konnte gezeigt werden, dass eine gestörte Barrierefunktion einen wichtigen Schritt für die Pathogenese darstellt und dass das Zytokin Tumornekrosefaktor alpha (TNF) eine entscheidende Rolle dabei spielt. Die Rolle der kleinen GTPase RhoA bei der TNF-induzierten Barrieredysfunktion ist aufgrund der Komplexität der Signalwege nicht vollständig verstanden. Daher sollte der Einfluss von RhoA und der RhoA Effektorkinase PKN auf diese Prozesse in vitro mit Hilfe eines induzierbaren Expressionssystems untersucht werden, welches die kontrollierte Expression einer konstitutiv aktiven (KA) RhoA- und PKN-Mutante sowie einer dominant negativen (DN) PKN-Mutante ermöglichte. Die Induktion der KA RhoA Expression führte zu einer Störung der epithelialen Barriere. Eine simultane Interferon-gamma und TNF-Behandlung resultierte ebenfalls in einer gestörten Barrierefunktion, welche in KA RhoA Zellen weniger stark ausgeprägt war. Die TNF-Behandlung führte zu einer Aktivierung von PKN, weshalb dieses Protein ein Kandidat für die Vermittlung dieser Effekte darstellte. Inhibition von PKN mit Inhibitoren oder der Expression der DN Mutante führten zu einer Aggravierung der TNF-induzierten Barrieredysfunktion, welche durch eine Verringerung des transepithelialen elektrischen Widerstandes und eine erhöhte Ionenpermeabilität charakterisiert war. Diese Veränderungen wurden von einer Erhöhung des Myosin Leichtketten und NF-kappaB p65-Phosphorylierungsniveaus sowie von morphologischen Veränderungen begleitet. Im Gegensatz dazu konnten diese Veränderungen durch die Expression der KA PKN Variante abgeschwächt bzw. verhindert werden. Diese Ergebnisse liefern Hinweise auf eine potenzielle Rolle der RhoA Effektorkinase PKN bei der Modulation der TNF-induzierten Barrieredysfunktion in intestinalen Epithelzellen. / Inflammatory bowel diseases are relapsing systemic inflammatory diseases of the gastrointestinal tract associated with high morbidity and costs. A plethora of studies demonstrated that impaired intestinal barrier function is a key step in the pathogenesis of inflammatory bowel diseases and that the cytokine tumor necrosis factor alphpa (TNF) is of pivotal importance for this effect. Although the small GTPase RhoA has been implicated in the control of tight junction function, its role in TNF induced barrier dysfunction is not entirely understood due to the complexity of its downstream signaling pathways. Therefore, the contribution of RhoA and its effector kinase PKN on TNF induced barrier dysfunction was investigated in vitro. An inducible expression system that allowed the doxycyline controlled expression of a constitutively active (CA) RhoA and PKN mutant as well as a dominant negative (DN) PKN mutant was generated. Induction of CA RhoA expression led to an impaired epithelial barrier. Simultaneous Interferon-gamma and TNF treatment also resulted in barrier perturbation, but this defect was attenuated when CA RhoA was expressed. As treatment with TNF resulted in activation of the RhoA effector kinase PKN, this protein constitutes a candidate molecule for the mediation of these effects. Inhibition of PKN by inhibitory compounds as well as expression of a dominant negative PKN mutant aggravated TNF-induced barrier dysfunction, characterized by a decline in transepithelial electrical resistance and increased ion permeability. These alterations were accompanied by an increase in myosin light-chain and NF-kappaB p65 subunit phosphorylation level as well as morphological changes of the tight junctions. Conversely, expression of a CA PKN mutant attenuated or prevented these changes. These results provide support for a potential role of the RhoA effector kinase PKN in modulating the barrier disrupting effects of TNF in the intestinal epithelium.

Dans de nombreuses régions du monde, d’immenses réserves gazéifères dites non conventionnelles sont piégées dans des roches faiblement perméables qui ne peuvent pas être exploitées par des méthodes de forage classiques. Bien que très controversée, la seule méthode d’exploitation de ces gisements repose actuellement sur la technique de fracturation hydraulique. Pour ces raisons, une collaboration de recherche a débuté en 2007 entre la société TOTAL et le Laboratoire de Génie Electrique de l’université de Pau (récemment devenu le laboratoire SIAME), visant à étudier l’opportunité d’utiliser la fracturation électrique comme solution alternative à la fracturation hydraulique. Cette méthode repose sur un procédé dynamique de fracturation de la roche par application d’une onde de pression créée suite à l’initiation d’un arc électrique dans un liquide. Ce travail, financé par TOTAL dans le cadre d’une bourse CIFRE, s’inscrit dans la continuité de travaux déjà engagés sur cette thématique et vise particulièrement à approfondir les connaissances concernant le cœur du procédé de fracturation : la décharge électrique dans l’eau et la caractérisation de l’onde de pression résultante. Dans cette optique, l’importance du circuit et des paramètres électriques de l’arc a été démontrée en termes d’injection de courant et de transfert de puissance. Une formule empirique permettant de prévoir la valeur de la pression dynamique a, par conséquent, été établie. Afin d’optimiser le rendement électro-acoustique, une étude spécifique a été menée sur l’effet du mode de rupture diélectrique du fluide. Ces travaux ont également permis de proposer des solutions concernant le contrôle de la dynamique de l’onde de pression. Enfin, les effets des propriétés thermodynamiques du fluide sur sa rigidité diélectrique, sur la consommation d’énergie, ainsi que sur la propagation de l’onde de pression ont été analysés afin d’établir une série de conclusions permettant d’optimiser le procédé. / Numerous parts of the world contain huge unconventional gas reserves which are located in low permeability rocks, and consequently, cannot be produced by classical drilling techniques. Besides its numerous detractors, the only currently available method to exploit these reservoirs relies on hydraulic fracturing. For these reasons, a research collaboration was started in 2007 between the Total Company and the Electrical Engineering Laboratory of Pau university (recently renamed SIAME Laboratory). The main goal was to study the potential concerning the use of the electrical fracturing technique as an alternative to hydraulic fracturing. This method is based on a dynamic rock fracturing process through the applying of a pressure wave enhanced by the generation of an electrical arc into a liquid. This work, which is financed by TOTAL through a CIFRE funding, follows the track initiated on this topic and mainly intends to improve the knowledge concerning the critical part of the fracturing process: the electrical discharge in water and the resulting pressure wave characterization. In this purpose, the importance of the circuit and of the arc electrical parameters was demonstrated in terms of current injection and power transfer. An empirical formula used to predict the dynamic pressure value has consequently been established. In order to optimize the electro acoustic efficiency, a specific study was performed on the liquid dielectric breakdown modus. This work allowed us to suggest new solutions concerning the dynamic pressure wave control. Finally, the fluid thermodynamic properties effects on its dielectric strength, on the energy consumption, and on the pressure wave propagation were analyzed in order to draw conclusions for the process optimization.

Der Coxsackie- und Adenovirus Rezeptor (CAR) ist als Bestandteil von Tight Junctions (TJ) an interzellulären Adhäsionsprozessen beteiligt und scheint eine wichtige Rolle in der Karzinogenese zu spielen. Diese ist jedoch insbesondere bei Entstehung von Darmkrebs weitgehend unklar. Ziel der Arbeit war es daher, die funktionelle Bedeutung, mögliche Interaktionspartner sowie die Expressionsregulation von CAR im kolorektalen Karzinom zu analysieren. In den Zelllinien CaCo2, Colo205, DLD1, HCT116, HT29, SW480 und T84 konnte die Expression von CAR (mRNA und Protein) nachgewiesen werden. Nach stabiler CAR-Überexpression durch Transfektion von CARcDNA in DLD1, HCT116 und SW480 wurde das Zellwachstum gehemmt und eine Abnahme von Migration und Invasion induziert. Eine stabile CAR-Inhibition nach Transfektion von CARsiRNA führte in diesen Zelllinien zum Anstieg der Proliferation sowie zu verstärkter Migrations- und Invasionsaktivität, die in DLD1 mit morphologischen Änderungen einhergingen. Eine Genexpressionsanalyse der Zelllinie DLD1 mit CAR-Inhibition identifizierte α-Catenin als das am stärksten regulierte Gen. Obwohl keine direkte Interaktion beider Proteine detektiert werden konnte, führte eine stabile Re-Expression von α-Catenin in DLD1 mit stabiler CAR-Inhibition zu einer deutlichen Reduktion von Proliferation, Migration und Invasion sowie zu einem Rückgang der zellmorphologischen Änderungen. Um den Einfluss von Differenzierung auf die Regulation der CAR-Expression zu untersuchen, erfolgte eine Behandlung aller Zelllinien mit Natriumbutyrat. Dies führte in fünf der sieben Zelllinien zu einer Aktivierung des CAR-Promotors sowie zu einer gesteigerten Expression und Immunoreaktivität von CAR an der Zelloberfläche. Die Zelllinie CaCo2 zeigte nach spontaner Differenzierung durch 21-tägiges Wachstum post Konfluenz ebenfalls eine verstärkte CAR-mRNA-Expression sowie eine erhöhte CAR-Präsenz an der Zelloberfläche. Die gewonnenen Daten konnten die funktionelle Bedeutung von CAR für die Kolonkarzinogenese sowie den Einfluss von α-Catenin auf diese Funktion deutlich machen. Es wurde gezeigt, dass die Expressionsregulation sowie die subzelluläre Verteilung von CAR durch den zellulären Differenzierungsstatus beeinflusst werden kann. / The Coxsackie and Adenovirus Receptor (CAR) is a transmembrane compound of the tight junctions in polarized epithelial cells mediating cellular adhesion. CAR was suggested to play a functional role in the development of epithelial malignomas but detailed knowledge is still lacking, especially for the colorectal carcinoma. Therefore, the functional impact and regulation of CAR expression in human colorectal carcinoma cell models were investigated. CAR protein and mRNA was detectable in the cell lines CaCo2, Colo205, DLD1, HCT116, HT29, SW480 and T84. Stable CAR over expression by transfection of CARcDNA in DLD1, HCT116 and SW480 led to reduced proliferation in vitro and in vivo. Also reduced migration and invasion were observed. Stable CAR inhibition by transfection of CARsiRNA in the same cell lines resulted in increased migration and invasion. In DLD1 morphological changes were found after CAR inhibition. Differential gene expression was detected in DLD1 cells with stable CAR inhibition revealing an 18-fold decrease in α-Catenin gene expression. Loss of α-Catenin was obtained on protein level, too. Although no direct interaction between CAR and α-Catenin could be proven ectopic re-expression of α-Catenin in DLD1 with CAR inhibition reversed the determined functional and morphological effects of a CAR knock down. Then, the impact of differentiation on regulation of CAR expression was investigated. Sodium butyrate treatment induced differentiation in all cell lines (determined by alkaline phosphatase activity), which was paralleled by an increase of CAR immunoreactivity at the plasma membrane in all cell lines but CaCo2. However, CAR protein and mRNA expression, as well as CAR gene promoter activity increased in 5 cell lines only, whereas in SW480 and CaCo2 a down regulation was observed. Spontaneous differentiation of CaCo2 after a growth period of 21 days post confluence resulted in up regulation of CAR mRNA expression as well as increased CAR presence at the plasma membrane. The data suggest that CAR plays a crucial role in the carcinogenesis of colorectal carcinoma which could be influenced by α-Catenin interaction. Differentiation determines the regulation of CAR expression and the subcellular distribution of CAR in colon cancer cells.

COSTA, Diego Rabelo da. Transportes e confinamento em monocamada e bicamada de nanoestruturas de grafeno com diferentes bordas, interfaces e potenciais. 2014. 201 f. Tese (Doutorado em Física) - Programa de Pós-Graduação em Física, Departamento de Física, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, 2014. / Submitted by Edvander Pires (edvanderpires@gmail.com) on 2015-06-01T22:18:12Z No. of bitstreams: 1 2014_tese_drcosta.pdf: 54910487 bytes, checksum: 82b386bac8259edaa10f6d5ff314bd42 (MD5) / Approved for entry into archive by Edvander Pires(edvanderpires@gmail.com) on 2015-06-01T22:19:16Z (GMT) No. of bitstreams: 1 2014_tese_drcosta.pdf: 54910487 bytes, checksum: 82b386bac8259edaa10f6d5ff314bd42 (MD5) / Made available in DSpace on 2015-06-01T22:19:16Z (GMT). No. of bitstreams: 1 2014_tese_drcosta.pdf: 54910487 bytes, checksum: 82b386bac8259edaa10f6d5ff314bd42 (MD5) Previous issue date: 2014 / Graphene, a two-dimensional lattice of carbon atoms, has been widely studied during the past few years. The interest in this material is not only due to its possible future technological applications, but also because it provides the possibility to probe interesting phenomena predicted by quantum field theories, ranging from Klein tunneling and other quasi-relativistic effects to the existence of new types of electron degrees of freedom, namely, the pseudo-spin, and the existence of two inequivalent electronic valleys in the vicinity of the gapless points of its energy spectrum. Several of the exotic properties observed in graphene originate from the fact that within the low energy approximation for the tight-binding Hamiltonian of graphene, electrons behave as massless Dirac fermions, with a linear energy dispersion. Just like in single layer graphene, the low-energy eletronic spectrum in bilayer graphene is gapless, but in this case it is dominated by the parabolic dispersion. Nevertheless, one interesting feature is shared by both monolayer and bilayer graphene: the valley degree of freedom. In this thesis, we theoretically investigate: (i) the dynamic properties in mono and bilayer graphene, performing a systematic study of wave packet scattering in different interface shapes, edges and potentials; and furthermore (ii) the energy levels of confined systems in graphene in the presence or absence of external magnetic and electric fields. In the first part of the work, we use the tight-binding approach to study the scattering of a Gaussian wave packet on monolayer graphene edges (armchair and zigzag) in the presence of real and pseudo (strain induced) magnetic fields and also calculate the transmission probabilities of a Gaussian wave packet through a quantum point contact defined by electrostatic gates in bilayer graphene. These numerical calculations are based on the solution of the time-dependent Schrödinger equation for the tight-binding model Hamiltonian, using the Split-operator technique. Our theory allows us to investigate scattering in reciprocal space, and depending on the type of graphene edge we observe scattering within the same valley, or between different valleys. In the presence of an external magnetic field, the well known skipping orbits are observed. However, our results demonstrate that in the case of a pseudo-magnetic field, induced by non-uniform strain, the scattering by an armchair edge results in a non-propagating edge state. We propose also a very efficient valley filtering through a quantum point contact system defined by electrostatic gates in bilayer graphene. For the suggested bilayer system, we investigate how to improve the efficiency of the system as a valley filter by varying parameters, such as length, width and amplitude of the applied potential. In the second part of the thesis, we present a systematic study of the energy spectra of graphene quantum rings having different geometries and edge types, in the presence of a perpendicular magnetic field. We discuss which features obtained through a simplified Dirac model can be recovered when the eigenstates of graphene quantum rings are compared with the tight-binding results. Furthermore, we also investigate the confined states in two different hybrid monolayer - bilayer systems, identifying dot-localized states and edge states for the suggested bilayer confinement structures, as well as we will study the behavior of the energy levels as a function of dot size and under an applied external magnetic field. Finally, using the four-band continuum Dirac model, we also derive a general expression for the infinite-mass boundary condition in bilayer graphene in order to apply this boundary condition to calculate analytically the confined states and the corresponding wave functions in a bilayer graphene quantum dot in the absence and presence of a perpendicular magnetic field. Our analytic results exhibit good agreement when compared with the tight-binding ones. / Grafeno, uma rede bidimensional de átomos de carbono, tem sido amplamente estudado durante os últimos anos. O interesse por este material não é apenas devido às suas possíveis aplicações tecnológicas futuras, mas também porque oferece a possibilidade de investigar fenômenos interessantes previstos pelas teorias quânticas de campo, que vão desde o tunelamento de Klein e outros efeitos quasi-relativísticos à existência de novos tipos de graus de liberdade do elétron, ou seja, o pseudo-spin, e a existência de dois vales eletrônicos não-equivalentes na vizinhança dos pontos sem gap do seu espectro de energia. Várias das propriedades exóticas observadas no grafeno originam-se do facto de que dentro da aproximação de baixas energias para o Hamiltoniano tight-binding do grafeno, elétrons se comportam como férmions de Dirac sem massa, com uma dispersão de energia linear. Assim como no caso de uma monocamada de grafeno, o espectro eletrônico de baixas energias para uma bicamada de grafeno é sem gap, mas, neste caso, é dominado pela dispersão parabólica. No entanto, uma característica interessante é compartilhada por ambas monocamada e bicamada de grafeno: o grau de liberdade de vale. Nesta tese, nós investigamos teoricamente: (i) as propriedades dinâmicas em mono e bicamadas de grafeno, realizando um estudo sistemático do espalhamento de pacotes de onda em diferentes formas de interfaces, bordas e potenciais; e, além disso, (ii) os níveis de energia de sistemas confinados no grafeno na presença ou ausência de campos magnéticos e elétricos externos. Na primeira parte do trabalho, nós utilizamos a abordagem tight-binding para estudar o espalhamento de um pacote de onda Gaussiano nas bordas de uma monocamada de grafeno (armchair e zigzag) na presença de campos magnéticos reais e pseudo-magnéticos (induzidos por tensão) e também calculamos as probabilidades de transmissão de um pacote de onda Gaussiano através de um contato de ponto quântico definido por potenciais eletrostáticos em bicamadas de grafeno. Estes cálculos numéricos são baseados na solução da equação de Schrödinger dependente do tempo para o Hamiltoniano do modelo tight-binding, usando a técnica Split-operator. Nossa teoria permite investigar espalhamento no espaço recíproco, e dependendo do tipo de borda do grafeno, nós observamos espalhamento dentro do mesmo vale, ou entre diferentes vales. Na presença de um campo magnético externo, as bem conhecidas órbitas skipping orbits são observadas. No entanto, nossos resultados demonstram que, no caso de um campo pseudo-magnético induzido por uma tensão não-uniforme, o espalhamento por uma borba armchair resulta em um estado de borda não-propagante. Nós também propomos um sistema de filtragem de vales muito eficiente através de um sistema de contato de ponto quântico definido por portas eletrostáticas em uma bicamada de grafeno. Para o sistema de bicamadas sugerido, nós investigamos a forma de melhorar a eficiência do sistema como um filtro de vales por diferentes parâmetros, como comprimento, largura e amplitude do potencial aplicado. Na segunda parte da tese, nós apresentamos um estudo sistemático dos espectros de energia de anéis quânticos de grafeno com diferentes geometrias e tipos de borda, na presença de um campo magnético perpendicular. Nós discutimos quais características obtidas por meio de um modelo simplificado de Dirac podem ser recuperadas quando os auto-estados de anéis quânticos de grafeno são comparados com os resultados do modelo tight-binding. Além disso, nós também investigamos os estados confinados em dois sistemas híbridos diferentes de monocamada - bicamada, identificando estados localizados dentro do ponto e estados de borda para as estruturas de confinamento em bicamadas sugeridas, assim como vamos estudar o comportamento dos níveis de energia em função do tamanho do ponto e sob um campo magnético externo aplicado. Finalmente, usando o modelo contínuo de Dirac de quatro bandas, nós também derivamos uma expressão geral para a condição de contorno de massa infinita em bicamada de grafeno, a fim de aplicar essa condição de contorno para calcular analiticamente os estados confinados e as correspondentes funções de onda em um ponto quântico em uma bicamada de grafeno na ausência e na presença de um campo magnético perpendicular. Nossos resultados analíticos apresentam boa concordância quando comparados com os resultados tight-binding.