<p>Epoxides are three-membered cyclic ethers formed in the metabolism of foreign substances and as endogenous metabolites. Epoxide hydrolases (EHs) are enzymes that catalyze the hydrolysis of epoxides to yield the corresponding diols. EHs have been implicated in diverse functions such as detoxification of various toxic epoxides, as well as regulation of signal substance levels.</p><p>The main goal of this thesis was to investigate and characterize the α/β hydrolase fold EH. The first part concerns the identifictaion of an EH in <i>Saccharomyces cerevisiae</i>. The second part involves detailed mechanistic and structural studies of a plant EH from potato, StEH1. </p><p>Despite the important function of EH, no EH has previously been established in <i>S. cerevisiae</i>. By sequence analysis, we have identified a new subclass of EH present in yeast and in a wide range of microorganisms. The <i>S. cerevisiae</i> protein was produced recombinantly and was shown to display low catalytic activity with tested epoxide substrates. </p><p>In plants, EHs are involved in the general defence system, both in the metabolism of the cutin layer and in stress response to pathogens. The catalytic mechanism of recombinantly expressed wild type and mutant potato EH were investigated in detail using the two enantiomers of <i>trans</i>-stilbene oxide (TSO). The proposed catalytic residues of StEH1 were confirmed. StEH1 is slightly enantioselective for the <i>S,S</i>-enantiomer of<i> trans</i>-stilbene oxide. Furthermore, distinct pH dependence of the two enantiomers probably reflects differences in the microscopic rate constants of the substrates. The detailed function of the two catalytic tyrosines was also studied. The behavior of the tyrosine pair resembles that of a bidentate Lewis acid and we conclude that these tyrosines function as Lewis acids rather then proton donors.</p><p>The three dimensional structure of StEH1 was solved, representing the first structure of a plant EH. The structure provided information about the substrate specificity of StEH1.</p>

Epoxides are three-membered cyclic ethers formed in the metabolism of foreign substances and as endogenous metabolites. Epoxide hydrolases (EHs) are enzymes that catalyze the hydrolysis of epoxides to yield the corresponding diols. EHs have been implicated in diverse functions such as detoxification of various toxic epoxides, as well as regulation of signal substance levels. The main goal of this thesis was to investigate and characterize the α/β hydrolase fold EH. The first part concerns the identifictaion of an EH in Saccharomyces cerevisiae. The second part involves detailed mechanistic and structural studies of a plant EH from potato, StEH1. Despite the important function of EH, no EH has previously been established in S. cerevisiae. By sequence analysis, we have identified a new subclass of EH present in yeast and in a wide range of microorganisms. The S. cerevisiae protein was produced recombinantly and was shown to display low catalytic activity with tested epoxide substrates. In plants, EHs are involved in the general defence system, both in the metabolism of the cutin layer and in stress response to pathogens. The catalytic mechanism of recombinantly expressed wild type and mutant potato EH were investigated in detail using the two enantiomers of trans-stilbene oxide (TSO). The proposed catalytic residues of StEH1 were confirmed. StEH1 is slightly enantioselective for the S,S-enantiomer of trans-stilbene oxide. Furthermore, distinct pH dependence of the two enantiomers probably reflects differences in the microscopic rate constants of the substrates. The detailed function of the two catalytic tyrosines was also studied. The behavior of the tyrosine pair resembles that of a bidentate Lewis acid and we conclude that these tyrosines function as Lewis acids rather then proton donors. The three dimensional structure of StEH1 was solved, representing the first structure of a plant EH. The structure provided information about the substrate specificity of StEH1.

Des nanoparticules d’or dispersées dans un carbone mésoporeux CMK-n (n = 1,3 et 8) ont été obtenues par une méthode originale qui consiste à répliquer des silices mésoporeuses dans lesquelles les particules d’or ont été préalablement formées. La taille des particules d’or est plus petite lorsque la surface de la silice est fonctionnalisée par un thiol (MPTMS) (dAu ~ 2 nm) que par un ammonium (TPTAC) (dAu ~ 6 nm). La taille des particules d’or dans les répliques peut être contrôlée à la fois par la température de calcination du moule et par la température de pyrolyse de la source de carbone. Bien que les répliques carbonées soient beaucoup mieux dispersées dans le milieu réactionnel apolaire que les moules siliciques correspondants, elles sont moins actives dans les oxydations aérobies du cyclohexène et du trans-stilbène en phase liquide. Les meilleures performances dans l'oxydation de ces deux molécules ont été obtenues sur les répliques pyrolysées à 750°C et contenant des particules d’or de taille moyenne d'environ 2 nm. Les très petites particules sont moins actives, probablement parce qu'elles sont complètement enrobées par du carbone, donc inaccessibles. Les performances catalytiques de nos répliques ont été comparées avec celles d'un catalyseur Au/CMK-3 préparé par dépôt colloïdal sur un carbone mésoporeux pré-formé. Les résultats montrent que nos catalyseurs sont beaucoup moins actifs que celui préparé par dépôt colloïdal, car la majorité des particules dans nos répliques sont recouvertes par du carbone. L'inaccessibilité des particules aux gaz a été confirmée par une mesure de chimisorption d’hydrogène sur un catalyseur Pt/CMK-3 préparé par une méthode identique. / Highly dispersed gold nanoparticles in ordered mesoporous carbons CMK-3 have been obtained by an original method which consists in replicating mesoporous SBA-15 silicas containing gold nanoparticles. The gold particle size is smaller when the silica surface is functionalized with a thiol (mercaptopropyl graft, MPTMS) (dAu ~ 2 nm) than with an ammonium (TPTAC) (dAu ~ 6 nm). The gold particle size in replicas can be controlled by both the calcination temperature of the silica template and the pyrolysis temperature of the carbon source. Although the carbon replicas are much better dispersed in non polar solvents than the corresponding silica templates, they are less active in the aerobic oxidations of cyclohexene and trans-stilbene in the liquid phase. The best performances in the oxidation of these two molecules have been obtained on replicas pyrolysed at 750°C and containing gold particles with an average size of about 2 nm. The very small particles are unexpectedly less active probably because they are completely coated by carbon, and thus inaccessible. The catalytic performances of our replicas have been compared with those of a Au/CMK-3 catalyst prepared by colloidal deposition onto a preformed mesoporous carbon replica. The results show that our catalysts are much less active than that prepared by colloidal deposition because the majority of particles in our replicas are covered by carbon. The inaccessibility of particles to gases has been confirmed by hydrogen chemisorption on a Pt/CMK-3 catalyst prepared by an identical method.

We report the use of imidazolium based tunable aryl alkyl ionic liquids (TAAILs) as solvents in the Mizoroki–Heck reaction. Different commercially available palladium sources, inorganic bases, TAAILs and reaction conditions were tested for the synthesis of trans-stilbene using bromobenzene and styrene. A variety of different stilbene derivatives were synthesized with exclusive formation of the (E)-isomers and isolated yields up to 97%. We were able to optimize the reaction conditions using only 0.25 mol% of Pd(OAc)2 as the catalyst and a reaction time of 4 hours. No additional ligands or additives are used in the reaction. The catalytic system using TAAILs achieved higher yields than commercially available imidazolium and phosphonium ionic liquids, demonstrating the potential of tailored ionic liquids as a reaction medium for the Mizoroki– Heck reaction.

The subject of this thesis is the design and development of a unified set up for femtosecond transient absorption and ultrafast Raman loss spectroscopy and demonstrate its potential in capturing the ultrafast photophysical and photochemical processes with excellent time and frequency resolution. Ultrafast spectroscopy has been serving as a powerful tool for understanding the structural dynamical properties of molecules in the condensed and gas phase. The advent of ultrashort pulses with their high peak power enables the laser spectroscopic community to study molecular reaction dynamics and photophysics that happen at extremely short timescales, ranging from picosecond to femtosecond. These processes can be measured with extremely high time resolution, which helps to resolve the under-lying molecular process. But in order to understand the global mechanism of the underlying molecular processes, we have to resolve the nuclear dynamics with the proper frequency resolution. However, achieving both, time and frequency resolutions simultaneously is not possible according to the Heisenberg uncertainty principle. Later, this limitation was overcome by femtosecond stimulated Raman spectroscopy (FSRS), a third order non-linear Raman spectroscopy. In this thesis we introduced the ultrafast Raman loss spectroscopic (URLS) technique which is analogous to FSRS, offering the modern ultrafast community to resolve molecular processes with better signal-to-noise ratio along with proper time and frequency resolution. We demonstrate the experimental procedure including the single shot detection scheme to measure whitelight background, ground state Ra-man, transient absorption and transient Raman in shot-to-shot detection fashion. URLS has been applied to understand the excited state planarization dynamics of 1,4-bis(phenylethynyl)benzene (BPEB) in different solvents. In addition, excitation wavelength dependent conformational reorganization dynamics of different sub-sets of thermally activated ground state population of BPEB are also discussed. Using the same techniques along with femtosecond transient absorption, we demonstrate the ultrafast vibrational energy transfer and the role of coherent oscillations of low frequency vibrations on the solution phase photo-isomerization of trans-stilbene from an optically excited state. The effects of solvents on the coherent nuclear motion are also discussed in the context of reaction rates. 2