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During this PhD thesis, cobalt (Co) catalysts have been prepared, characterized and studied in the carbon monoxide hydrogenation (CO+H2) reaction (also known as “Fischer-Tropsch” (FT) reaction). In industry, the FT synthesis aims at producing long chain hydrocarbons such as gasoline or diesel fuels. The interest is that the reactants (CO and H2) are obtained from other carbonaceous sources than crude oil: natural gas, coal, biomass or even petroleum residues. As it is well known that the worldwide crude oil reserves will be depleted in a few decades, the FT reaction represents an attractive alternative for the production of various fuels. Moreover, this reaction can also be used to produce high value specialty chemicals (long chain alcohols, light olefins…). Two different types of catalysts have been investigated during this thesis: cobalt with magnesia used as support or dispersant (Co/MgO) and cobalt with silica used as support (Co/SiO2). Each catalyst from the first class is prepared by precipitation of a mixed Co/Mg oxalate in acetone. This coprecipitation is followed by a thermal decomposition under reductive atmosphere leading to a mixed Co/MgO catalyst. On the other hand, Co/SiO2 catalysts are prepared by impregnation of a commercial silica support with a chloroform solution containing Co nanoparticles. This impregnation is then followed by a thermal activation under reductive atmosphere. The mixed Co/Mg oxalates and the resulting Co/MgO catalysts have been extensively characterized in order to gain a better understanding of the composition, the structure and the morphology of these materials: thermal treatments under reductive and inert atmospheres (followed by MS, DRIFTS, TGA and DTA), BET surface area measurements, XRD and electron microscopy studies have been performed. Moreover, an original in situ technique for measuring the H2 chemisorption surface area of catalysts has been developed and used over our catalysts. The performances of the Co/MgO and Co/SiO2 catalysts have then been evaluated in the CO+H2 reaction at atmospheric pressure. Chemical Transient Kinetics (CTK) experiments have been carried out in order to obtain information about the reaction kinetics and mechanism and the nature of the catalyst active surface under reaction conditions. The influence of several experimental parameters (temperature, H2 and CO partial pressures, total volumetric flow rate) and the effect of passivation are also discussed with regard to the catalyst behavior. Our results indicate that the FT active surface of Co/MgO 10/1 (molar ratio) is entirely covered by carbon, oxygen and hydrogen atoms, most probably associated as surface complexes (possibly formate species). Thus, this active surface does not present the properties of a metallic Co surface (this has been proved by performing original experiments consisting in switching from the CO+H2 reaction to the propane hydrogenolysis reaction (C3H8+H2) which is sensitive to the metallic nature of the catalyst). CTK experiments have also shown that gaseous CO is the monomer responsible for chain lengthening in the FT reaction (and not any CHx surface intermediates as commonly believed). Moreover, CO chemisorption has been found to be irreversible under reaction conditions. The CTK results obtained over Co/SiO2 are quite different and do not permit to draw sharp conclusions concerning the FT reaction mechanism. More detailed studies would have to be carried out over these samples. Finally, Co/MgO catalysts have also been studied on a combined DRIFTS/MS experimental set-up in Belfast. CTK and Steady-State Isotopic Transient Kinetic Analysis (SSITKA) experiments have been carried out. While formate and methylene (CH2) groups have been detected by DRIFTS during the FT reaction, the results indicate that these species play no role as active intermediates. These formates are most probably located on MgO or at the Co/MgO interface, while methylene groups stand for skeleton CH2 in either hydrocarbon or carboxylate. Unfortunately, formate/methylene species have not been detected by DRIFTS over pure Co catalyst without MgO, because of the full signal absorption.

The aromatic amino acid hydroxylases phenylalanine hydroxylase (PheH), tyrosine hydroxylase (TyrH) and tryptophan hydroxylase (TrpH) utilize tetrahydropterin and molecular oxygen to catalyze aromatic hydroxylation. All three enzymes have similar active sites and contain an iron atom facially coordinated by two histidines and a glutamate. The three enzymes also catalyze the benzylic hydroxylation of 4- methylphenylalanine. The intrinsic primary and ?-secondary isotope effects for benzylic hydroxylation and their temperature dependences are nearly identical for the three enzymes, suggesting that the transition states, the tunneling contributions and the reactivities of the iron centers are the same. When molecular oxygen and the tetrahydropterin are replaced by hydrogen peroxide (H2O2), these enzymes catalyze the hydroxylation of phenylalanine to form tyrosine and meta-tyrosine with nearly identical second order rate constants. When the H2O2-dependent reaction is carried out with cyclohexylalanine or 4-methylphenylalanine, the products are 4-HO-cyclohexylalanine and 4-hydroxymethylphenylalanine, respectively. These experiments provide further evidence that the intrinsic reactivities of the iron centers in these enzymes are the same. Wild-type PheH and the uncoupled mutant protein V379D exhibit normal and inverse isotope effects, respectively, with deuterated phenylalanines. When the reaction is monitored by stopped-flow absorbance spectroscopy, three steps are visible. The first step is the reversible binding of O2, the second step is 5-7 fold faster than the turnover number, setting a limiting value for the rate constant for O2 activation, and the last step is non-enzymatic. There is no burst in the pre-steady state formation of tyrosine. These results are consistent with formation of the new C-O bond to form tyrosine as the ratelimiting step of the reaction. The reaction of TrpH with both tryptophan and phenylalanine was studied by stopped-flow absorbance spectroscopy and rapid-quench product analysis. With either amino acid as substrate, four steps can be distinguished. The first step is the reversible binding of O2 to the Fe(II) center; this results in an absorbance signature with a maximum at 420 nm. This O2 complex decays with a rate constant that is 18-22 fold faster than the turnover number with either amino acid, setting a the lower limit for the rate constant for O2 activation. The rate constant for the third step agrees well with the pre-steady state of formation of 5-hydroxytryptophan or tyrosine from rapid-quench product analysis. The rate constant for the fourth step agrees well with the turnover number. Overall, these results show that O2 activation is fast and turnover with each amino acid is limited by hydroxylation and release of a product, with the former step being about 4-fold faster than the latter.

Epoxide hydrolase I from Solanum tuberosum (StEH1) and isolated variants thereof has been studied for mapping structure-function relationships with the ultimate goal of being able to in silico predict modifications needed for a certain activity or selectivity. To solve this, directed evoultion using CASTing and an ISM approach was applied to improve selectivity towards either of the enantiomeric product diols from (2,3-epoxypropyl)benzene (1). A set of variants showing a range of activites and selectivities was isolated and characterized to show that both enantio- and regioselectivity was changed thus the enrichment in product purity was not solely due to kinetic resolution but also enantioconvergence. Chosen library residues do also influence selectivity and activity for other structurally similar epoxides styrene oxide (2), trans-2-methyl styrene oxide (3) and trans-stilbene oxide (5), despite these not being selected for.    The isolated hits were used to study varying selectivity and activity with different epoxides. The complex kinetic behaviour observed was combined with X-ray crystallization and QM/MM studies, powerful tools in trying to explain structure-function relationships. Crystal structures were solved for all isolated variants adding accuracy to the EVB calculations and the theoretical models did successfully reproduce experimental data for activities and selectivities in most cases for 2 and 5.  Major findings from calculations were that regioselectivity is not always determined in the alkylation step and for smaller and more flexible epoxides additional binding modes are possible, complicating predictions and the reaction scheme further. Involved residues for the catalytic mechanism were confirmed and a highly conserved histidine was found to have major influence on activity thus suggesting an expansion of the catalytic triad to also include H104. Docking of 1 into the active site of the solved crystal structures was performed in an attempt to rationalize regioselectivity from binding. This was indeed successful and an additional binding mode was identified, involving F33 and F189, both residues targeted for engineering. For biocatalytic purpose the enzyme were was successfully immobilized on alumina oxide membranes to function in a two-step biocatalytic reaction with immobilized alcoholdehydrogenase A from Rhodococcus ruber, producing 2-hydroxyacetophenone from racemic 2.

The biosynthesis of tetrapyrolles in eukaryotes and the alpha-subclass of purple photosynthetic bacteria is controlled by the pyridoxal 5?-phosphate (PLP)-dependent enzyme, 5-aminolevulinate synthase (ALAS). Aminolevulinate, the universal building block of these macromolecules, is produced together with Coenzyme A (CoA) and carbon dioxide from the condensation of glycine and succinyl-CoA. The three-dimensional structures of Rhodobacter capsulatus ALAS reveal a conserved active site serine that moves to within hydrogen bonding distance of the phenolic oxygen of the PLP cofactor in the closed, substrate-bound enzyme conformation, and simultaneously to within 3-4 angstroms of the thioester sulfur atom of bound succinyl-CoA. To elucidate the role(s) this residue play(s) in enzyme activity, the equivalent serine in murineerythroid ALAS was mutated to threonine or alanine. The S254A variant was active, but both the KmSCoA and kcat values were increased, by 25- and 2-fold, respectively, suggesting the increase in turnover is independent of succinyl-CoA-binding. In contrast, substitution of S254 with threonine results in a decreased kcat, however the Km for succinyl-CoA is unaltered. Removal of the side chain hydroxyl group in the S254A variant notably changes the spectroscopic properties of the PLP cofactor and the architecture of the PLP-binding site as inferred from circular dichroism spectra. Experiments examining the rates associated with intrinsic protein fluorescence quenching of the variant enzymes in response to ALA binding show that S254 affects product dissociation. Together, the data led us to suggest that succinyl-CoA binding in concert with the hydrogen bonding state of S254 governs enzyme conformational equilibria. As a member of the alpha-oxoamine synthase family, ALAS shares a high degree of structural similarity and reaction chemistry with the other enzymes in the group. Crystallographic studies of the R. capsulatus ALAS structure show that the alkanoate component of succinyl-CoA is bound by a conserved arginine and a threonine. To examine acyl-CoA-binding and substrate discrimination in murine erythroid ALAS, the corresponding residues (R85 and T430) were mutated and a series of CoA substrate analogs were tested. The catalytic efficiency of the R85L variant with octanoyl-CoA was 66-fold higher than that calculated for the wild-type enzyme, suggesting this residue is strategic in substrate binding. Hydrophobic substitutions of the residues that coordinate acyl-CoA-binding produce ligand-induced changes in the CD spectra, indicating that these amino acids affect substrate-mediated changes to the microenvironment of the chromophore. Pre-steady-state kinetic analyses of the R85K variant-catalyzed reaction show that both the rates associated with product-binding and the parameters that define quinonoid intermediate lifetime are dependent on the chemical composition of the acyl-CoA tail. Each of the results in this study emphasizes the importance of the relationship between the bifurcate interaction of the alkanoic acid component of succinyl-CoA and the side chains of R85 and T430. From the X-ray crystal structures of Escherichia coli 8-amino-7-oxonoanoate synthase and R. capsulatus ALAS, it was inferred that a loop covering the active site moved 3-6 Å between the holoenzymic and acyl-CoA-bound conformations. To elucidate the role that the active site lid plays in enzyme function, we shuffled the portion of the murine erythroid ALAS cDNA corresponding to the lid sequence (Y422-R439), and isolated functional variants based on genetic complementation in an ALA-deficient strain. Variants with potentially greater enzymatic activity than the wild-type enzyme were screened for increased porphyrin overproduction. Turnover number and the catalytic efficiency of selected functional variants with both substrates were increased for each of the enzyme variants tested, suggesting that increased activity is linked to alterations of the loop motif. The results of transient kinetics experiments for three isolated variants when compared to wild-type ALAS showed notable differences in the pre-steady-state rates that define the kinetic mechanism, indicating that the rate of ALA release is not rate-limiting for these enzymes. The thermodynamic parameters for a selected variant-catalyzed reaction indicated a reduction in the amount of energy required for catalysis. This finding is consistent with the proposal that, in contrast to the wild-type ALAS reaction, a protein conformational change associated with ALA release no longer limits turnover for this variant enzyme.

L'énergie de liaison, la mobilité et la réactivité de l'oxygène dans des matériaux nanocristallins de type cérine-zircone dopée aux terres rares (La, Gd, Pr, Sm) supportant des métaux (Pt, Ni, Ru) ont été étudiées par échange isotopique en réacteurs statiques et traversés (18O2 and C18O2), DTP d'O2, RTP d'H2 et CH4, microcalorimétrie pulsée et réacteur TAP. La mobilité d'oxygène de coeur apparait comme contrôlée par le réarrangement des sphères de coordination des cations Ce et Zr et par des chemins préférentiels le long de chaines Pr3+/Pr4+. En surface et subsurface, ce contrôle se ferait par des interactions fortes métal/support avec l'incorporation de cations métalliques. Cette mobilité de l'oxygène limiterait le vieillissement et le frittage en conditions réalistes de reformage par le gaz carbonique. Des études cinétiques non stationnaires et par marquage isotopique ont permis de proposer un mécanisme bi-fonctionnel fondé sur des étapes rédox indépendantes pour l'activation du méthane et du dioxyde de carbone. L'étape limitante serait l'activation du méthane tandis que l'activation du gaz carbonique s'opérerait plus rapidement sur des sites réduits du support, générant de l'oxygène diffusant aisément vers l'interface métal/support (enthalpie de désorption 600-650 kJ/mol) pour oxyder les fragments du méthane en CO et H2. Dans les meilleures formulations catalytiques, des agrégats Ni-Ru faciliteraient l'activation du CO2 dans son état de transition, en marge de carbonates stables qui restent "spectateurs" de la réaction. Pour le Pt/PrCeZrO, il existerait une autre voie d'activation de carbonates faiblement adsorbés sur des ions Pt+ stabilisés par des cations Pr4+. Cette spécificité confère à cette formulation des perspectives très intéressantes en reformage à sec, notamment sur des supports structurés de type alumine corindon, bien adaptés à des réacteurs compacts à temps courts pour des ressources en gaz dispersées et de capacité limitée / Oxygen bonding strength, mobility and reactivity in nanocrystalline Ln-doped ceria-zirconia (Ln=La, Gd, Pr, Sm) with supported Pt, Ni, Ru were studied by state-of-the-art techniques such as isotopic exchange in static and flow reactors with 18O2 and C18O2, O2 TPD, H2 and CH4 TPR, pulse microcalorimetry and TAP reactor. Bulk oxygen mobility is found controlled by a rearrangement of Ce and Zr cations coordination sphere with doping as well as by fast oxygen migration along Pr3+/Pr4+ cationic chains. Surface and near-surface oxygen mobility appears controlled by a strong metal-support interaction with incorporation of metallic ions into surface layers and domain boundaries. In realistic feeds, the catalytic activity in dry reforming of methane correlates with oxygen mobility, required to prevent coking and metal sintering.Transient kinetic studies (non steady-state and SSITKA) allowed us to propose a bi-functional reaction mechanism corresponding to independent redox steps of CH4 and CO2 activation. The rate- limiting step is shown to be the irreversible activation of CH4 on metal sites, while CO2 dissociation on reduced sites of oxide supports proceeds much faster (being reversible for the steady-state surface) followed by a fast oxygen transfer along the surface/domain boundaries to metal sites where CH4 molecules are transformed to CO and H2. The CH4 selective conversion into syngas would involve strongly bound bridging oxygen species with heat of desorption ::600-650 kJ/mol O2. For optimized formulations, Ni+Ru clusters could be involved in CO2 activation via facilitating C-O bond breaking in the transition state, thus increasing the rate constant of the surface reoxidation by CO2, while strongly bound carbonates behave as spectators. For Pt/PrCeZrO, an additional fast route to syngas would occur on Pt ions with participation of weakly bound carbonates stabilized by neighboring Pr4+ ions. Such specificity makes this system highly promising for methane oxi-dry reforming, especially on structured corundum supports for short contact time compact reactors, well adapted to stranded and limited gas resources

During this PhD thesis, cobalt (Co) catalysts have been prepared, characterized and studied in the carbon monoxide hydrogenation (CO+H2) reaction (also known as “Fischer-Tropsch” (FT) reaction). In industry, the FT synthesis aims at producing long chain hydrocarbons such as gasoline or diesel fuels. The interest is that the reactants (CO and H2) are obtained from other carbonaceous sources than crude oil: natural gas, coal, biomass or even petroleum residues. As it is well known that the worldwide crude oil reserves will be depleted in a few decades, the FT reaction represents an attractive alternative for the production of various fuels. Moreover, this reaction can also be used to produce high value specialty chemicals (long chain alcohols, light olefins…).<p>Two different types of catalysts have been investigated during this thesis: cobalt with magnesia used as support or dispersant (Co/MgO) and cobalt with silica used as support (Co/SiO2). Each catalyst from the first class is prepared by precipitation of a mixed Co/Mg oxalate in acetone. This coprecipitation is followed by a thermal decomposition under reductive atmosphere leading to a mixed Co/MgO catalyst. On the other hand, Co/SiO2 catalysts are prepared by impregnation of a commercial silica support with a chloroform solution containing Co nanoparticles. This impregnation is then followed by a thermal activation under reductive atmosphere.<p>The mixed Co/Mg oxalates and the resulting Co/MgO catalysts have been extensively characterized in order to gain a better understanding of the composition, the structure and the morphology of these materials: thermal treatments under reductive and inert atmospheres (followed by MS, DRIFTS, TGA and DTA), BET surface area measurements, XRD and electron microscopy studies have been performed. Moreover, an original in situ technique for measuring the H2 chemisorption surface area of catalysts has been developed and used over our catalysts.<p>The performances of the Co/MgO and Co/SiO2 catalysts have then been evaluated in the CO+H2 reaction at atmospheric pressure. Chemical Transient Kinetics (CTK) experiments have been carried out in order to obtain information about the reaction kinetics and mechanism and the nature of the catalyst active surface under reaction conditions. The influence of several experimental parameters (temperature, H2 and CO partial pressures, total volumetric flow rate) and the effect of passivation are also discussed with regard to the catalyst behavior.<p>Our results indicate that the FT active surface of Co/MgO 10/1 (molar ratio) is entirely covered by carbon, oxygen and hydrogen atoms, most probably associated as surface complexes (possibly formate species). Thus, this active surface does not present the properties of a metallic Co surface (this has been proved by performing original experiments consisting in switching from the CO+H2 reaction to the propane hydrogenolysis reaction (C3H8+H2) which is sensitive to the metallic nature of the catalyst). CTK experiments have also shown that gaseous CO is the monomer responsible for chain lengthening in the FT reaction (and not any CHx surface intermediates as commonly believed). Moreover, CO chemisorption has been found to be irreversible under reaction conditions.<p>The CTK results obtained over Co/SiO2 are quite different and do not permit to draw sharp conclusions concerning the FT reaction mechanism. More detailed studies would have to be carried out over these samples.<p>Finally, Co/MgO catalysts have also been studied on a combined DRIFTS/MS experimental set-up in Belfast. CTK and Steady-State Isotopic Transient Kinetic Analysis (SSITKA) experiments have been carried out. While formate and methylene (CH2) groups have been detected by DRIFTS during the FT reaction, the results indicate that these species play no role as active intermediates. These formates are most probably located on MgO or at the Co/MgO interface, while methylene groups stand for skeleton CH2 in either hydrocarbon or carboxylate. Unfortunately, formate/methylene species have not been detected by DRIFTS over pure Co catalyst without MgO, because of the full signal absorption.<p> / Doctorat en Sciences de l'ingénieur / info:eu-repo/semantics/nonPublished