The period between pollination and fertilization, or the progamic phase, is a critical life history stage in seed plants and innovations in this life history stage are hypothesized to have played an important role in the diversification of flowering plants. Over the course of this dissertation research, I investigated programic phase development in Nymphaeales (water lilies), an ancient angiosperm lineage that diverged from the basalmost or next most basal node of the angiosperm phylogenetic tree and that is represented in the oldest angiosperm fossil record. I used field experiments and microscopy to document pollination biology, breeding system, and reproductive developmental traits in two families of Nymphaeales: Cabombaceae (Brasenia, Cabomba) and Hydatellaceae (Trithuria). Nymphaeales exhibits considerable variation in reproductive traits and true carpel closure, wind-pollination, and a primarily selfing breeding system have arisen independently in the lineage. Pollen tube pathway length, timing of stigma receptivity, and pollen tube growth rates are conspicuous traits that have undergone considerable modification in concert with shifts in pollination biology and breeding system. Post-pollination developmental processes in Nymphaeales appear to experience selective pressures similar to those experienced by more derived angiosperms and to evolve in similar ways. Nymphaeales also exhibits traits, such as accelerated pollen tube growth, callosic pollen tube walls, and the formation of callose plugs, that are almost certainly plesiomorphic in angiosperms and may have facilitated modification of carpel structure and progamic phase ontogenies. The finding that pollen tube traits that underlie developmental flexibility were already in place before the divergence of Nymphaeales supports the hypothesis that innovations in male gametophyte development were instrumental in facilitating early angiosperm diversification.

Giant vesicles may contain several spatial compartments formed by phase separation within their enclosed aqueous solution. This phenomenon might be related to molecular crowding, fractionation and protein sorting in cells. To elucidate this process we used two chemically dissimilar polymers, polyethylene glycol (PEG) and dextran, encapsulated in giant vesicles. The dynamics of the phase separation of this polymer solution enclosed in vesicles is studied by concentration quench, i.e. exposing the vesicles to hypertonic solutions. The excess membrane area, produced by dehydration, can either form tubular structures (also known as tethers) or be utilized to perform morphological changes of the vesicle, depending on the interfacial tension between the coexisting phases and those between the membrane and the two phases. Membrane tube formation is coupled to the phase separation process. Apparently, the energy released from the phase separation is utilized to overcome the energy barrier for tube formation. The tubes may be absorbed at the interface to form a 2-demensional structure. The membrane stored in the form of tubes can be retracted under small tension perturbation. Furthermore, a wetting transition, which has been reported only in a few experimental systems, was discovered in this system. By increasing the polymer concentration, the PEG-rich phase changed from complete wetting to partial wetting of the membrane. If sufficient excess membrane area is available in the vesicle where both phases wet the membrane, one of the phases will bud off from the vesicle body, which leads to the separation of the two phases. This wetting-induced budding is governed by the surface energy and modulated by the membrane tension. This was demonstrated by micropipette aspiration experiments on vesicles encapsulating two phases. The budding of one phase can significantly decrease the surface energy by decreasing the contact area between the coexisting phases. The elasticity of the membrane allows it to adjust its tension automatically to balance the pulling force exerted by the interfacial tension of the two liquid phases at the three-phase contact line. The budding of the phase enriched with one polymer may be relevant to the selective protein transportation among lumens by means of vesicle in cells. / In der wässrigen Lösung im Inneren von Riesenvesikeln können sich mehrere, räumlich getrennte Phasen ausbilden. Dieses Phänomen könnte im Zusammenhang stehen mit wichtigen Prozessen innerhalb von Zellen, wie etwa Fraktionierung und Sortieren von Proteinen, oder etwa das sog. “Molecular Crowding”. Wir studieren diesen Prozess am Beispiel von zwei unterschiedlichen Polymeren, Polyethylen Glycol (PEG) und Dextran, innerhalb von Riesenvesikeln. Die Dynamik der Phasentrennung dieser eingeschlossenen Polymerlösung lässt sich untersuchen, indem man die Vesikel einer hypertonischen Lösung aussetzt. Durch die Dehydrierung entsteht dabei überschüssige Membranfläche. Je nach Grenzflächenspannung zwischen den koexistierenden Phasen, sowie zwischen der Membran und den beiden Phasen, wird diese überschüssige Fläche entweder zur Ausbildung röhrchenartiger Strukturen verwendet, oder aber es stellen sich morphologische Veränderungen am Vesikel ein. Die Ausbildung der Membranröhrchen ist offenbar gekoppelt an den Phasentrennungsprozess: Die Energie, die bei Phasentrennung frei wird, dient offenbar dazu, die Energiebarriere der Röhrchenbildung zu überwinden. Die Röhrchen können an der Grenzfläche absorbiert werden und dort eine zweidimensionale Struktur ausbilden. Durch kleine Störungen in der Spannung kann die in Form von Röhrchen gespeicherte Membran wieder in deren Oberfläche zurückgezogen werden. Desweiteren wurde in diesem System ein Benetzungsübergang entdeckt, der bisher nur in wenigen experimentellen Systemen beobachtet werden konnte: Erhöht man die Polymerkonzentration, so geht die PEG-reiche Phase von vollständiger zu unvollständiger Benetzung der Membran über. Steht in einem Vesikel, in dem beide Phasen die Membran benetzen, ausreichend überschüssige Membranfläche zur Verfügung, so wird sich eine Phase aus dem Vesikelkörper herauswölben, was zur Trennung der beiden Phasen führt. Dieser benetzungsinduzierte Auswölbungsprozess wird durch die Oberflächenenergie bestimmt und von der Membranspannung moduliert. Dies konnte experimentell an Vesikeln gezeigt werden, die zwei Phasen beinhalten, indem durch eine Mikropipette ein Unterdruck erzeugt wurde. Die Oberflächenenergie kann durch Auswölbung einer der Phasen signifikant verringert werden, da die Kontaktfläche zwischen den koexistierenden Phasen verkleinert wird. Die Elastizität der Membran erlaubt es, die Spannung automatisch anzupassen, sodass die ziehende Kraft ausgeglichen wird, die durch die Grenzflächenspannung der beiden flüssigen Phasen an der drei-Phasen Kontaktlinie ausgeübt wird. Die Auswölbung einer durch Polymere angereicherten Phase könnte relevant sein für den selektiven Transport von Proteinen mit Vesikeln in der Zelle.

Delta-like 1 Homologue (DLK1), a transmembrane protein of 383 amino acids, belongs to a family of epidermal growth factor (EGF)-like repeat-containing proteins that include Notch/Delta/Serrate, which are involved in cell fate determination. DLK1 is also known as preadipocyte factor-1, pG2, and FA-1, which are identical or polymorphic products of a single gene. Structural analysis revealed that DLK1 consists of an extracellular domain with six EGF-like repeats, a transmembrane domain, and an intracellular domain. The extracellular EGF-like region of DLK1 (DLK1-EC) can be released to the medium by the action of tumor necrosis factor alpha converting enzyme (TACE). DLK1 participates in various differentiation processes including adipogenesis, hematopoiesis, and adrenal gland differentiation. Besides, DLK1 overexpression was observed in patients with biliary atresia and in glioblastoma. Recently, the extracellular domain of thrombomodulin, which also contains six EGF¡Vlike structures, has been delineated to stimulate angiogenesis in vitro and in vivo. This prompted us to investigate whether DLK1-EC played a role in angiogenesis. To test such hypothesis, recombinant DLK1-EC was expressed and purified in E. coli. Adding DLK1-EC recombinant protein inhibited the adipogenesis of adipocytes-derived stem cells in a dose-dependent manner. Despite marginal effect on matrix-metalloproteinase secretion, exogenous DLK1-EC significantly stimulated the proliferation, motility and tube-forming capability of cultured endothelial cells. Above all, implantation of DLK1-EC-containing hydron pellets induced cornea neovascularization in a dose-dependent manner. Western blot analysis revealed that exogenous DLK1-EC induced angiogenesis through Notch1 activating downstream gene Hes1 and subsequently signaling such as Akt/eNOS, p38 MAPK, and ERK pathway to perform its function. Indeed, blockade of Notch1 signaling using £^-secretase inhibitor leads to decreased angiogenesis and inhibits DLK1 EC-induced endothelial cell tubular formation in vitro and in vivo. These findings indicate that DLK1-EC induced Notch1 activation mediated by £^-secretase and tansactivation Akt/eNOS pathway and that Notch1 is critical for DLK1 EC-induced angiogenesis. These results may bring further insights into the physiological and pathological functions of DLK1

Hepatocellular carcinoma (HCC) is one of the most prevalent cancers worldwide. Current therapeutic approaches for HCC including surgical resection and trans-arterial embolization (TAE) remain largely ineffective, underscoring the need for development of novel therapeutic strategies. Because HCC is high vascularized, continuous administration angiogenesis inhibitor using gene therapy approach may facilitate long-term blockade tumor vasculature, thereby perturbing the growth of HCC. Vasostatin 112 (VS112) encodes an alternatively spliced fragment of angiogenesis inhibitor vasostatin, which encompasses residues 1-64 and 133-180 of calreticulin. In this study, recombinant adenovirus encoding VS112 (Ad-VS112) was generated to evaluate its potential for suppression of orthotopic Novikoff hepatoma in syngenic Sprague-Dawley (SD) rats. Adenovirus-mediated VS112 overexpression significantly inhibited the migration and tube formation of endothelial cells, indicating the anti-angiogenic potency of VS112 gene delivery. However, VS112 overexpression had no influence on the viability of N1-S1 Novikoff hepatoma cells. To investigate the prophylactic effect of VS112 expression on hepatoma growth, N1-S1 cells were infected with Ad-VS112 or adenovirus encoding green fluorescent protein (Ad-GFP) then implanted into the liver of SD rats. After 14 days, rats implanted with VS112-expressing showed significantly reduced incidence and size of hepatoma compared with those implanted with Ad-GFP-infected cells. To investigate the therapeutic efficacy of VS112 gene delivery, the SD rats were implanted with N1-S1 cells on day 0, treated with adenovirus vectors (2 x 1010 plaques forming units) via intravenous route on day 1, then sacrificed on day 14 to monitor hepatoma growth. By measuring tumor weight, it was found that Ad-VS112-treated rats exhibited significantly decreased tumor burden compared with control groups, which was in accordance with their lower serum GOT level. Histological analysis revealed a significant reduction of vWF-positive blood vessels in Ad-VS112-treated tumors, which was accompanied with a decrease in Ki-67-positive proliferating cells and an increase in TUNEL-positive apoptotic cells. Moreover, the expression of pro-inflammatory nuclear factor kappa B (NF£eB) and cyclooxgenase II (COXII) was also effectively attenuated in Ad-VS112-treated hepatoma. In conclusion, prior or post VS112 gene delivery potently suppresses the growth of orthotopic hepatoma,thereby holding promises for future treatment of HCC.

The focus of the present work is on the empirical characterization and modeling of ignition trends of ternary blends of three distinct hydrocarbon classes, namely a methyl ester (C9H18O2), a linear alkane (n-C9H20), and a cycloalkane (MCH). Numerous surrogate biofuel formulations have been proposed in the literature, yet specific blending of these species has not been studied. Moreover, the effects of blending biofuel compounds with conventional hydrocarbons are not widely studied and a further point is the lack of studies paying specific attention to the effects of fuel variation within a given blended biofuel. To this end, a statistical Design of Experiments L9 array, comprised of 4 parameters (%MO, %MCH, pressure, and equivalence ratio) with 3 levels of variation, constructed in order to systematically study the effects of relative fuel concentrations within the ternary blend enabled variations in fuel concentration for methyl octanoate and MCH of 10% - 30% and 20% - 40%, respectively. Variation in pressure of 1 atm, 5 atm, and 10 atm and in equivalence ratio of 0.5, 1.0, and 2.0 were used, respectively. The fuel-volume percentage of n-nonane varied from 30% - 70%. In total, 10 ternary blends were studied. Ignition delay times for the ternary blends and for the three constituents were obtained by monitoring excited-state OH or CH transitions, A2Epsilon+ -> X2Pi or A2Delta -> X2Pi, respectively, behind reflected shock waves using a heated shock tube facility. Dilute conditions of 99% Ar (vol.) were maintained in all shock tube experiments with the exception of a separate series of n-nonane and MCH experiments under stoichiometric conditions which used 4% oxygen (corresponding to ~ 95% Ar dilution). Temperatures behind reflected shock waves were varied over the range 1243 < T (K) < 1672. From over 450 shock tube experiments, empirical ignition delay time correlations were constructed for all three pure fuels and a master correlation equation for the blended fuels. Ignition experiments conducted on the pure fuels at 1.5 atm indicated the following ignition delay time order, from shortest to longest: methyl octanoate < n-nonane < MCH. With increased pressure to 10 atm (nominal) the order remained, in general, consistent. Under fuel-lean conditions, ignition trends between methyl octanoate and n-nonane exhibited overlap at temperatures below 1350 K, below which the trends diverged with methyl octanoate having shorter ignition delay times. Similar behavior was observed under fuel-rich conditions, yet with the overlap occurring above 1450 K. Stoichiometric ignition trends did not display overlapping behavior under either 1.5 atm or 10 atm pressure. Laminar flame speed measurements were performed at 1 atm and an initial temperature of 443 K on the pure fuel constituents. Additional flame speed measurements of MCH were conducted at 403 K to compare with literature values and were shown to agree strongly with experiments conducted in a constant-volume apparatus. The experiments conducted herein, for the first time, measure laminar flame speeds methyl octanoate. A detailed chemical kinetics mechanism was compiled from three independent, well-validated models for the constituent fuels, where the sub-mechanisms for methyl octanoate and MCH were extracted for integration into a base n-nonane model. The compiled mechanism in the present study (4785 reactions and 1082 species) enables modeling of oxidation processes of the ternary fuel blends of interest. Calculations were performed using the compiled model relative to the base models to assess the impact of utilizing different base chemistry sets. In general, results were reproduced well relative to base models for both n-nonane and MCH, however results for methyl octanoate from both the compiled model and the base model are in disagreement with the results measured herein. Ignition delay times of the fuel blends are well-predicted for several conditions, specifically for blends at lean/high-pressure and stoichiometric/high-pressure conditions, however are not accurately modeled at fuel-rich, high-pressure conditions.

The development of the nervous system is a complex process. Cell divisions, cell differentiation and signalling interactions must be tightly regulated. To comprehend the mature nervous system, we have to understand its assembly during development. Two main questions were addressed in this thesis: (1) how is the caudal part of the central nervous system specified and (2) how is the early development of the olfactory placode regulated? By using tissue and whole embryo assays in the chick, we identified signalling molecules involved in these processes and propose possible mechanisms for their function. The central nervous system is regionalized along its rostrocaudal axis during development. However, the mechanisms by which cells in the caudal part of the neuraxis acquire rostrocaudal regional identity have been unresolved. We provide evidence that at gastrula stages cells in the caudal neural plate are specified as cells of caudal spinal cord character in response to Wnt and FGF signals and that cells of rostral spinal cord and caudal hindbrain character only emerge later at neurulation stages in response to retinoic acid signalling acting on previously caudalized cells. In the hindbrain and spinal cord distinct motor neuron subtypes differentiate at precise rostrocaudal positions from progenitor cells. We provide evidence that cells in the caudal neural plate have acquired sufficient positional information to differentiate into motor neurons of the correct rostrocaudal subtype. The olfactory placode gives rise to all the structures of the peripheral olfactory system, which, in the chick consists of the olfactory nerve, the sensory epithelium, where the olfactory sensory neurons (OSN) are located and the respiratory epithelium, that produces the mucus. Several studies have addressed the role of signalling cues in the specification of OSNs but much less is known about the regulation of sensory versus respiratory patterning and the events controlling early neurogenesis in the developing olfactory placode. We show that by stage 14 the olfactory placode is specified to give rise to both cells of sensory and respiratory epithelial character. Moreover, cells of respiratory epithelial character require BMP signalling, whereas cells of sensory epithelial character require FGF signalling. We suggest a mechanism in which FGF and BMP signals act in an opposing manner to regulate olfactory versus respiratory epithelial cell fate decision. BMP signalling has also been implicated in the regulation of neurogenesis in the sensory epithelium, and we show that BMP signals are required for the generation of OSNs, because in the absence of BMP signalling cells in the sensory epithelium do not mature. Independently, we also analyzed the role of Notch signalling during early olfactory development both in vitro and in vivo and provide evidence that active Notch signalling is required to prevent cells in the olfactory placode from premature differentiation.

The purpose of this research project is the design and optimization of complex chemical engineering problems, by employing evolutionary algorithms (EAs). EAs are optimization techniques which mimic the principles of genetics and natural selection. Given their population-based approach, EAs are well suited for solving multiobjective optimization problems (MOOPs) to determine Pareto-optimal solutions. The Pareto front refers to the set of non-dominated solutions which highlight trade-offs among the different objectives. A broad range of applications have been studied, all of which are drawn from the chemical engineering field. The design of an industrial packed bed styrene reactor is initially studied with the goal of maximizing the productivity, yield and selectivity of styrene. The dual population evolutionary algorithm (DPEA) was used to circumscribe the Pareto domain of two and three objective optimization case studies for three different configurations of the reactor: adiabatic, steam-injected and isothermal. The Pareto domains were then ranked using the net flow method (NFM), a ranking algorithm that incorporates the knowledge and preferences of an expert into the optimization routine. Next, a multiobjective optimization of the heat transfer area and pumping power of a shell-and-tube heat exchanger is considered to provide the designer with multiple Pareto-optimal solutions which capture the trade-off between the two objectives. The optimization was performed using the fast and elitist non-dominated sorting genetic algorithm (NSGA-II) on two case studies from the open literature. The algorithm was also used to determine the impact of using discrete standard values of the tube length, diameter and thickness rather than using continuous values to obtain the optimal heat transfer area and pumping power. In addition, a new hybrid algorithm called the FP-NSGA-II, is developed in this thesis by combining a front prediction algorithm with the fast and elitist non-dominated sorting genetic algorithm-II (NSGA-II). Due to the significant computational time of evaluating objective functions in real life engineering problems, the aim of this hybrid approach is to better approximate the Pareto front of difficult constrained and unconstrained problems while keeping the computational cost similar to NSGA-II. The new algorithm is tested on benchmark problems from the literature and on a heat exchanger network problem.

CANDU (CANada Deuterium Uranium) reactor utilizes Pressure Tube (PT) fuel channel design and heavy water as a coolant. Fuel channel annulus gas acts as an insulator to minimize heat losses from the coolant to the moderator. Since fuel bundles are continuously under high neutron fluxes, annulus gas nuclides undergo different nuclear transformations generating new composition of the gas that might have different physical properties which are undesirable for the annulus system. In addition, gas nuclides become radioactive and lead to an increase of the radioactive material inventory in the reactor and consequently to an increase of radiation levels. Pressure Tube Reactor (PTR) and Pressure Tube Supercritical Water Reactor (PT SCWR) fuel channel models have been developed in Monte Carlo N-Particle (MCNP) code. Neutron fluxes in the fuel channel annulus gas have been obtained by simulating different types of neutron sources in both PTR and PT SCWR fuel channels. Transmutation rates of annulus gases have been calculated for different gases (CO2, N2, Ar and Kr) at different pressures and temperatures in both fuel channels. The variation of the transmutation rates, neutron fluxes and gas densities in the annulus gas have been investigated in PTR and PT SCWR fuel channels at constant pressures and different temperatures. MCNP code along with NIST REFPROP [14] and other software tools have been used to conduct the calculations. / UOIT

Prophylactic salpingo-oophorectomy, the preventive removal of the ovaries and fallopian tubes, is recommended to women who carry a BRCA1 or BRCA2 mutation in order to reduce the risk of breast, ovarian and fallopian tube cancer. The short and long term health and quality of life effects of this procedure are not well understood. We examined the actual and perceived reduction in cancer risk associated with this surgery. The impact of prophylactic salpingo-oophorectomy on health-related quality of life, psychological distress, cancer worry, menopausal symptoms, and sexual function during the year following surgery was also evaluated. In our prospective study, prophylactic salpingo-oophorectomy was associated with an 80% reduction in ovarian and fallopian tube cancer risk. The residual risk for primary peritoneal cancer was 0.2% per year or 4.3% at 20 years after salpingo-oophorectomy. Most women accurately perceived their risk of breast cancer. However, the risk for ovarian cancer was overestimated, particularly by women who carry a BRCA2 mutation. Physical and mental health-related quality of life did not decrease in the year following surgery; and psychological distress was similar to levels experienced by the general population. Most women were significantly less worried about cancer after the surgery, however, a subset of women continued to experience significant cancer specific distress after prophylactic salpingo-oophorectomy. Women who underwent prophylactic salpingo-oophorectomy when premenopausal experienced a significant worsening of vasomotor symptoms and a decline in sexual functioning. Hormone replacement therapy mitigated these symptoms, but not to pre-surgical levels. Dyspareunia was somewhat alleviated by hormone replacement therapy, however, the decrease in sexual pleasure was not. Satisfaction with the decision to undergo prophylactic salpingo-oophorectomy was high regardless of these symptoms. These studies will provide women who are considering prophylactic salpingo-oophorectomy with information about the reduction in cancer risk associated with the surgery and the possible effects experienced during the year following surgery.

Prophylactic salpingo-oophorectomy, the preventive removal of the ovaries and fallopian tubes, is recommended to women who carry a BRCA1 or BRCA2 mutation in order to reduce the risk of breast, ovarian and fallopian tube cancer. The short and long term health and quality of life effects of this procedure are not well understood. We examined the actual and perceived reduction in cancer risk associated with this surgery. The impact of prophylactic salpingo-oophorectomy on health-related quality of life, psychological distress, cancer worry, menopausal symptoms, and sexual function during the year following surgery was also evaluated. In our prospective study, prophylactic salpingo-oophorectomy was associated with an 80% reduction in ovarian and fallopian tube cancer risk. The residual risk for primary peritoneal cancer was 0.2% per year or 4.3% at 20 years after salpingo-oophorectomy. Most women accurately perceived their risk of breast cancer. However, the risk for ovarian cancer was overestimated, particularly by women who carry a BRCA2 mutation. Physical and mental health-related quality of life did not decrease in the year following surgery; and psychological distress was similar to levels experienced by the general population. Most women were significantly less worried about cancer after the surgery, however, a subset of women continued to experience significant cancer specific distress after prophylactic salpingo-oophorectomy. Women who underwent prophylactic salpingo-oophorectomy when premenopausal experienced a significant worsening of vasomotor symptoms and a decline in sexual functioning. Hormone replacement therapy mitigated these symptoms, but not to pre-surgical levels. Dyspareunia was somewhat alleviated by hormone replacement therapy, however, the decrease in sexual pleasure was not. Satisfaction with the decision to undergo prophylactic salpingo-oophorectomy was high regardless of these symptoms. These studies will provide women who are considering prophylactic salpingo-oophorectomy with information about the reduction in cancer risk associated with the surgery and the possible effects experienced during the year following surgery.