The objective of this thesis was to assess the physical (concentrations, durations, and sedimentation) and biological effects of total suspended solids (TSS) in Arctic lakes following in-lake construction of dikes. TSS concentration and duration estimates were applied in a Severity of Ill Effects model which predicted possible habitat degradation and a reduction of feeding of salmonids with no significant difference between stations (ANOVA, p=0.153). Benthic invertebrates collected inside suspended sediment containment curtains showed a decrease in richness and abundance (Tukey’s, p<0.05), with no effects elsewhere. Stable isotope analysis from lake trout and arctic char muscle tissue suggested no differences in isotopic signatures following TSS exposure, but stable isotope analysis of stomach contents in lake trout had a significant increase in δ15N compared to the reference basin (Tukey’s, p<0.05). These findings suggested that lake trout adapted their food sources under moderate TSS exposure and benthic invertebrates rapidly recovered to pre-disturbance values. / Agnico-Eagle Mines Limited: Meadowbank Division and the University of Guelph; Research approved by Department of Fisheries and Oceans & Nunavut Impact Review Board

The accumulation of persistent contaminants is a significant issue for the health of aquatic environments. This study aims to determine the effects of polycyclic aromatic hydrocarbons (PAH) on the stress response of fish by monitoring plasma cortisol levels and the expression of key hypothalamic-pituitary-interrenal (HPI) stress axis regulators. Injection of benzo(a)pyrene (BaP), a ubiquitous PAH, induced a differential dose- and time-dependentcortisol response in rainbow trout and brown bullhead. BaP exposure also elicited a species-specific transcriptional response at all levelsof the HPI axis.Similarly, the HPI axis response to a standardized emersionstressor revealed species-specific differences. In the field, exposure of different brown bullhead populations to sediment with complex PAH mixtures did not consistently affect cortisol levels and providedno evidence of genetic adaptation of the stress response. Thus, future studies are needed to bridge the gap in our understanding between the laboratory and field effects of PAHs on the stress response of fish.

Cumulative effects, often minor individually but collectively significant, are continually being grappled with by researchers, policy makers and practitioners. Despite this the Canadian approach to cumulative effects assessment is thought by many to be ineffective. In this thesis I investigate the literature that surrounds cumulative effects and uncovered three distinct themes that occur chronologically: genesis, project-based approach and integration. During the genesis phase cumulative effects nomenclature, ideas and frameworks was created. The main theme of this era was to asses these effects at a large scale and to have a strong understanding of a systems ecology prior to the assessment. This approach was found to be too complex and so a more narrow project-based approach was implemented and still remains today. This approach is heavily criticized and as such researchers are now trying to find an approach that integrates these two divergent themes into a regional level assessment. I have found there to be several frameworks but an absence of effective regional methodologies. There is a need for regional metrics if this approach is to ever be institutionally supported. Food web structure can be evaluated at multiple scales and has been shown to be responsive to environmental variation; thus, it has potential for application as a metric for cumulative effects. Here, using stable isotope analysis, I field test integrative measures of food web structure (food chain length, habitat coupling, trophic omnivory) at sites of varying degrees of anthropogenic stressors in Georgian Bay, Ontario to evaluate the use of food webs as a metric for cumulative effects assessment. I found that food web structure varied significantly among sites. Sites with high levels of stress displayed structural characteristics reflective of human activities such as shorter food chain lengths, increased trophic omnivory, and reduced habitat coupling relative to the non-stressed sites. These results indicate that food web structure as an ecosystem level metric may provide insight into anthropogenic activities, and may be applied routinely as a metric for doing Cumulative Effects Assessment. / University of Guelph, Saugeen Ojibway Nation, Georgian Bay Forever

Stocking trout to create successful sport fisheries is an irresistible lure to fisheries managers and sport anglers alike, but the implicit assumptions behind this simple process have seldom been questioned or assessed. Using common fisheries monitoring techniques, combined with social surveys, at nine Alberta lakes, I quantified three main assumptions behind put-and-take stocking. Surprisingly, 1) stocking high densities of Rainbow Trout created very low-density populations; 2) these populations supported mediocre fisheries; 3) these mediocre fisheries, if above a threshold catch rate, attracted very large numbers of satisfied anglers. Based on these findings, the stocking density and the direct cost of stocking were reduced by 80% at three experimental lakes. No major decreases in fishing quality, angler participation, or angler satisfaction were observed. I suggest refinements in the stocking process focus on determining how to provide adequate numbers of trout to create a basic level of satisfaction with the fishing experience.

Bull trout (Salvelinus confluentus) populations from Alberta river drainage systems were compared using molecular techniques. Restriction fragment length polymorphisms (RFLP's) within the NDI and ND5/6 regions of the mitochondrial genome were observed. In addition, randomly amplified polymorphic DNA profiles (RAPD's) from total genomic DNA extracts were compared. Interdrainage comparisons using mtDNA revealed significant population heterogeneity among Alberta bull trout. Percent sequence divergence in mtDNA ranged from 0.14% to 0.92%. Most fish in each population were composed of a small number of common haplotypes, and the remaining fish displayed rare or locally unique haplotypes. RAPD profiles were used to calculate genetic distance values for Alberta, Canada and Montana, U.S.A. populations. Both Nei and Cavalli-Sforza distance values were used to generate neighbor-joining, FITCH and KITSCH distance trees. Two genetically distinct groups of bull trout were revealed by the RAPD analysis and the possiblity that post-glacial bull trout populations are derived from two separate refugia is suggested. / xvii, 161 leaves : ill. ; 28 cm.

Anthropogenic influences and climate change are warming rivers in New Brunswick and threatening the cold water habitats of native salmonids. When ambient river temperatures in summer exceed the tolerance level of Atlantic salmon and brook trout, individuals behaviourally thermoregulate by seeking out cold water refugia. These critical thermal habitats are often created by tributaries and concentrated groundwater discharge. Thermal infrared imagery was used to map cold water anomalies along a 53 km reach of the Cains River on 23 July 2008. Although efficient and useful for mapping surface temperature of a continuous stream reach, the fish did not use all identified thermal anomalies as refugia. Overall, 100 % of observed large brook trout >35 cm in length were found in 30 % of the TIR-mapped cold water anomalies. Ninety eight percent of observed small brook trout 8 – 30 cm in length were found in 80 % of the mapped cold water anomalies and their densities within anomalies were significantly higher than densities outside of anomalies. Fifty nine percent of observed salmon parr were found in 65 % of the mapped anomalies; however, they were dispersed within study sites and their densities were not significantly different within anomalies compared to outside of the anomalies. No brook trout were observed at the seven noncold water study sites that were investigated. Preference curves for various habitat variables including velocity, temperature, depth, substrate, and deep water availability near cold water anomalies were developed based on field investigations during high temperature events (ambient river temperature >21 oC). Combined with thermal imagery, managers can use the physical descriptions of thermal refugia developed here as a tool to help conserve and restore critical thermal refugia for Atlantic salmon and brook trout on the Cains River, and potentially similar river systems.

No description available.

No description available.

This thesis investigates the influence of predator movements upon habitat selection and foraging success. It deals with two very distinct datasets one from a marine system, the snow crab (Chionoecetes opilio) fishery, and the second from a freshwater system, an experimental rainbow trout (Oncorhynchus mykiss) aquaculture operation. Deriving a standardized measure of catch from logbook data is important because catch per unit effort (CPUE) is used in fisheries analysis to estimate abundance, but it some cases CPUE is a biased estimate. For the snow crab fishery, a relative abundance measure was developed using fisher movements and logbook data that reflected commercially available biomass and produced an improved relative abundance estimate. Results from the aquaculture dataset indicate that escaped farmed rainbow trout continue to use the cage site when waste feed is available, while native lake trout do not interact with the cage. Once access to waste feed is removed, both lake trout and escaped rainbow trout do not use the cage site. This thesis uses methods to identify patterns and behaviours using movement tracks to increase our understanding of predator habitat usage.

Parasiter kan påverka sina värdar på många olika sätt. Flodpärlmusslans (Margaritifera margaritifera L.) glochidielarver lever inkapslade som parasiter på gälarna hos öring (Salmo trutta L.) i flera månader innan de blir frilevande. Genom experiment i ett strömakvarium har denna studie undersökt hypoteserna att öring med inkapslade gälparasiter tar färre byten, och simmar kortare avstånd när de födosöker än öring utan gälparasiter.   Resultaten visade att infekterad öring tog signifikant färre byten/minut än oinfekterad öring både i början och i slutet av en födosöksperiod under vilken individerna konfronterades med tvåhundra poteniella byten. Vilket visar att infekterad öring har en lägre furageringshastighet är oinfekterad öring. Däremot påvisades ingen skillnad mellan öring med och utan parasiter med avseende på antal byten tagna i förhållande till avstånd från bytet.    Den lägre furageringshastigheten som påvisades hos de infekterade öringarna tyder på att infektion av flodpärlmusslans larver kan ha negativa effekter på fiskarnas tillväxt, och därmed överlevnad. Detta kan bero på faktorer som minskad aktivitet, ökad ventilation och förändringar i beteende hos de infekterade fiskarna, som är en effekt av parasitinfektionen. / Parasites can impact their hosts in many different ways. The larval glochida of freshwater pearl mussels (Margaritifera Margaritifera L.) infect the gills of brown trout (Salmo trutta L.), where they spend several months before becoming free-living. Using stream aquarium experiments, this study investigated the hypotheses that infected trout would capture fewer prey, and would swim less distance to capture prey, than would uninfected trout.   The results showed that infected brown trout caught significantly fewer prey/minute both at the beginning and at the end of a foraging period during which individuals were fed two hundred potential prey. This suggests that infected brown trout have a lower foraging rate than uninfected brown trout. However, no significant difference between infected and uninfected fish was found in terms of the number of prey taken in relation to distance to the prey.   The lower foraging rate for infected brown trout suggests that infection of the freshwater pearl mussel’s glochidia may have negative effects on their growth rate, and consequently survival. This may be due to factors such as reduced activity, increased ventilation and changes in behavior, which are effects from the parasite infection.