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Mise au point de nouvelles méthodes de conjugaison oligonucléotide/sucre et développement d'un microsystème d'analyse des interactions lectine/sucre / Development of new methods for carbohydrate/oligonucleotide conjugation and of a microarray to study the lectin/carbohydrate interactionsPourceau, Gwladys 25 November 2010 (has links)
Les interactions entre les sucres et les lectines sont généralement l'étape clé dans de nombreux phénomènes biologiques et pathologiques. Malgré leu r importance cruciale, ces interactions sont paradoxalement caractérisées par des constantes d'affinité faibles et nécessite une multiprésentation des motifs saccharidiques pour être significatives. Cette augmentation est appelée "effet cluster". En outre, les techniques d'analyse actuellement utilisées en laboratoire nécessitent des quantités importantes de produits, ce qui est difficilement compatible avec les méthodes de synthèse actuelle. Pour pallier ces difficultés, une approche originale basée sur l'utilisation conjointe de glycooligonucléotide et de puces à ADN a été proposée. Les glycoconjugués basés sur des squelettes phosphodiesters et couplés à des séquences d'ADN ont été synthétisés en utilisant la chimie des oligonucléotides, couplée à la "click chemistry". La séquence d'ADN quant à elle a permis l'ancrage sur une puce à ADN et donc la mesure de leur affinité vis-à-vis de différentes lectines. Ce manuscrit rapporte le développement des nouvelles méthodologies de synthèse des glycooligonucléotides ainsi que la préparation de nombreux glycoconjugués originaux, dont l'affinité pour différentes lectines a été mesurée via l'utilisation de la puce à ADN. L'influence de plusieurs paramètres a été étudiée: le nombre de résidus, l'arrangement spatial, la lipophilie etc. Il s'avère que l'arrangement spatial semble être l'un des points les plus importants dans la mise au point d'un glycoconjugué. / The interactions between carbohydrates and lectins are generally the "key step" in many biological and pathological phenomena. Despite their importance, these interactions are paradoxically characterized by low affinity constants and requires multipresence of saccharide to be significant. This increase is called "cluster effect". In addition, the analysis techniques currently used in the laboratory requires large quantities of products, which is hardly compatible with the current methods of synthesis. To circumvent these difficulties, a original approach based on the combined use of glycooligonucleotides and DNA microarrays has been proposed. Glycoconjugates based on phosphodiester skeletons linked to DNA sequences have been synthesized using the chemistry of oligonucleotides, coupled with the "click chemistry". The DNA sequence has allowed the anchoring on a DNA chip and therefore the measurement of their affinity versus different lectins.This manuscript reports the development of new synthetic methodologies for the glycooligonucleotides synthesis and the preparation of many original glycoconjugates, whose affinity for various lectins was measured through the use of DNA microarray. The influence of several parameters was studied: the number of residues, the spatial arrangement, etc. lipophilicity. The spatial arrangement appears to be one of the most important parameters in the development of a glycoconjugate.
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Planejamento e síntese de tuberculostáticos potenciais com base na estrutura de maltosiltransferase (GlgE) de Mycobacterium tuberculosis / Design and synthesis of potential tuberculostatics based in maltosyltransferase (GlgE) of Mycobacterium tuberculosis.Natanael Dante Segretti 21 March 2017 (has links)
A tuberculose (TB) é uma doença infectocontagiosa causada principalmente pelo Mycobacterium tuberculosis (Mtb). A TB era uma doença considerada em vias de extinção, porém sua incidência voltou a aumentar devido a diversos fatores, como o fluxo migratório dos chamados \"Países Reservatórios\" e a pandemia da AIDS. Em 2013, a OMS estimou 9 milhões de novos casos de TB e 1,5 milhões de mortes. A multirresistência aos quimioterápicos disponíveis justifica a procura por novos tuberculostáticos. Face ao exposto, o trabalho objetivou a síntese de potenciais inibidores da maltosiltransferase (GlgE), um novo e promissor alvo contra o Mtb, utilizando Planejamento com base na Estrutura do Alvo Molecular -- Structure-Based Drug Design (SBDD). A comparação das simulações de dinâmica molecular do sistema apo da GlgE e em complexo com a maltose-1-fosfato (M1P) mostrou as mudanças estruturais, em nível atômico, decorrentes da ligação com seu substrato. Levando em consideração estes dados, as simulações de docking dos potenciais inibidores revelaram que análogos glicosídicos e maltosídicos triazólicos ligados a grupos aromáticos substituídos possuem melhores perfis de interação com o sítio ativo da GlgE e, por essa razão, foram escolhidos para síntese. Assim, sintetizaram-se análogos glicosídicos e maltosídicos através da click chemistry, obtendo-se rendimentos variados. Posteriormente, realizaram-se ensaios enzimáticos e microbiológicos no Institute for Tuberculosis Research (ITR), University of Illinois at Chicago, USA. Apesar de os ensaios enzimáticos estarem em andamento, os compostos ensaiados apresentaram atividades que variaram de moderada a fraca, frente à cepa H37Rv. Dois compostos glicosídicos exibiram valores de Concentração Inibitória Mínima (CIM) inferiores a 60 µM, sem efeito citotóxico em células VERO em concentrações superiores a 250 µM. Tais resultados indicam que o análogo glicosídico triazólico aromático, como o NDS 112, pode ser utilizado como protótipo interessante para o planejamento de novas séries de compostos capazes de atuar como tuberculostáticos / Tuberculosis (TB) is an contagious infectious disease mainly caused by Mycobacterium tuberculosis (Mtb). TB was a disease considered in extinction, but its incidence has risen again due to several factors, such as the migration from \"Reservatoir Countries\" and AIDS pandemic. In 2013, WHO estimated 9 million new TB cases and 1.5 million deaths. Multidrug resistance to drugs available in chemotherapy validates the search for new TB drugs. In this context, this work aimed to the design and synthesis of potential inhibitors of maltosyltransferase (GlgE), a new and promissor target against Mtb using Structure-Based Drug Design. Comparison between molecular dynamic simulations of GlgE apo system and in complex with maltose-1-phosphate (M1P) showed important structural changes at molecular level due to substrate binding. Considering these data, docking simulations of potential inhibitors revealed that glucoside and maltoside triazoles analogues bound to substituted aromatic groups have better interaction profiles with the GlgE active site and for this reason they were chosen for synthesis. Thus, glucoside and maltoside triazole analogues were synthetized through click chemistry with different yields. Then, enzymatic and microbiological assays were performed at Institute for Tuberculosis Research (ITR), University of Illinois at Chicago, USA. Although the enzymatic assays are ongoing, componds were tested against H37Rv strains and they have shown activity ranging from moderate to weak. Two compounds presented Minimal Inhibitory Concentration (MIC) values below 60 µM, without cytotoxic effect in VERO cells in concentrations higher than 250 µM. These results indicate that glucosidic aromatic triazoles analogues, such as NDS 112, can be used as a prototype for design new series of compounds capable of acting as antituberculosis agents
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Planejamento e síntese de tuberculostáticos potenciais com base na estrutura de maltosiltransferase (GlgE) de Mycobacterium tuberculosis / Design and synthesis of potential tuberculostatics based in maltosyltransferase (GlgE) of Mycobacterium tuberculosis.Segretti, Natanael Dante 21 March 2017 (has links)
A tuberculose (TB) é uma doença infectocontagiosa causada principalmente pelo Mycobacterium tuberculosis (Mtb). A TB era uma doença considerada em vias de extinção, porém sua incidência voltou a aumentar devido a diversos fatores, como o fluxo migratório dos chamados \"Países Reservatórios\" e a pandemia da AIDS. Em 2013, a OMS estimou 9 milhões de novos casos de TB e 1,5 milhões de mortes. A multirresistência aos quimioterápicos disponíveis justifica a procura por novos tuberculostáticos. Face ao exposto, o trabalho objetivou a síntese de potenciais inibidores da maltosiltransferase (GlgE), um novo e promissor alvo contra o Mtb, utilizando Planejamento com base na Estrutura do Alvo Molecular -- Structure-Based Drug Design (SBDD). A comparação das simulações de dinâmica molecular do sistema apo da GlgE e em complexo com a maltose-1-fosfato (M1P) mostrou as mudanças estruturais, em nível atômico, decorrentes da ligação com seu substrato. Levando em consideração estes dados, as simulações de docking dos potenciais inibidores revelaram que análogos glicosídicos e maltosídicos triazólicos ligados a grupos aromáticos substituídos possuem melhores perfis de interação com o sítio ativo da GlgE e, por essa razão, foram escolhidos para síntese. Assim, sintetizaram-se análogos glicosídicos e maltosídicos através da click chemistry, obtendo-se rendimentos variados. Posteriormente, realizaram-se ensaios enzimáticos e microbiológicos no Institute for Tuberculosis Research (ITR), University of Illinois at Chicago, USA. Apesar de os ensaios enzimáticos estarem em andamento, os compostos ensaiados apresentaram atividades que variaram de moderada a fraca, frente à cepa H37Rv. Dois compostos glicosídicos exibiram valores de Concentração Inibitória Mínima (CIM) inferiores a 60 µM, sem efeito citotóxico em células VERO em concentrações superiores a 250 µM. Tais resultados indicam que o análogo glicosídico triazólico aromático, como o NDS 112, pode ser utilizado como protótipo interessante para o planejamento de novas séries de compostos capazes de atuar como tuberculostáticos / Tuberculosis (TB) is an contagious infectious disease mainly caused by Mycobacterium tuberculosis (Mtb). TB was a disease considered in extinction, but its incidence has risen again due to several factors, such as the migration from \"Reservatoir Countries\" and AIDS pandemic. In 2013, WHO estimated 9 million new TB cases and 1.5 million deaths. Multidrug resistance to drugs available in chemotherapy validates the search for new TB drugs. In this context, this work aimed to the design and synthesis of potential inhibitors of maltosyltransferase (GlgE), a new and promissor target against Mtb using Structure-Based Drug Design. Comparison between molecular dynamic simulations of GlgE apo system and in complex with maltose-1-phosphate (M1P) showed important structural changes at molecular level due to substrate binding. Considering these data, docking simulations of potential inhibitors revealed that glucoside and maltoside triazoles analogues bound to substituted aromatic groups have better interaction profiles with the GlgE active site and for this reason they were chosen for synthesis. Thus, glucoside and maltoside triazole analogues were synthetized through click chemistry with different yields. Then, enzymatic and microbiological assays were performed at Institute for Tuberculosis Research (ITR), University of Illinois at Chicago, USA. Although the enzymatic assays are ongoing, componds were tested against H37Rv strains and they have shown activity ranging from moderate to weak. Two compounds presented Minimal Inhibitory Concentration (MIC) values below 60 µM, without cytotoxic effect in VERO cells in concentrations higher than 250 µM. These results indicate that glucosidic aromatic triazoles analogues, such as NDS 112, can be used as a prototype for design new series of compounds capable of acting as antituberculosis agents
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Target-guided synthesis approach to the discovery of novel bivalent inhibitors of glutathione transferasesClipson, Alexandra Jayne January 2012 (has links)
Target-guided synthesis is an approach to drug discovery that uses the biological target as a template to direct synthesis of its own best inhibitors from small molecule fragments. The process bridges the gap between chemical synthesis of drug candidates and their biological binding assay, merging the two operations into a single process whereby the active site or a binding pocket within the structure of the biological target directly controls the assembly of the best inhibitor in situ. Two different approaches to target-guided synthesis, the thermodynamic approach, making use of reversible reactions, and the kinetic approach, which uses an irreversible reaction, have been employed to discover novel, isoform selective inhibitors of the glutathione transferase (GST) enzyme family – possible drug targets in cancer and parasitic disease treatments. The thermodynamic approach described in this thesis uses the aniline-catalysed reversible acyl hydrazone formation reaction to create a dynamic covalent library of bivalent ligands designed to bind the dimeric structure of GST. In the presence of GST one of the bivalent ligands was selectively amplified at the expense of the other library members. This ligand was shown, via biological assays, to be a specific inhibitor for one isoform of GST, the mu isoform mGSTM1-1. A kinetic approach has also been investigated as a way to identify novel bivalent GST inhibitors utilising the Huisgen 1, 3 dipolar cycloaddition reaction. An azide and alkyne fragment library was designed to bind across the dimeric GST structure. The inhibitor structures are therefore bivalent, containing two anchoring fragments known to bind to the GST active site, linked by a triazolopeptide spacer. The triazole provides the click chemistry disconnection, enabling rapid in situ screening of candidate alkyne and azide fragments for inhibitor discovery. Whilst the in situ reaction with GST yielded inconclusive results, a number of the triazole products were found to have low nanomolar inhibitory activity towards GST.
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Inorganic Aspects of “Click” Chemistry in Polymers and Dendrimers : synthesis, Nanoparticle Stabilization and Catalysis / Aspects inorganiques de la chimie “click” dans les polymères et dendrimères : synthèses, stabilisation de nanoparticules et catalyseLiang, Liyuan 06 July 2011 (has links)
La thèse concerne les aspects inorganiques de la réaction des alcynes terminaux avec les azotures, la principale des réactions dites ”click”. La catalyse de cette réaction par des dendrimères centrés sur le cuivre (I) nous a permis de mettre en évidence des effets dendritiques originaux. Les assemblages dendritiques et polymériques fonctionnels réalisés à l’aide cette réaction “click”, en particulier avec des carboranes, nous ont conduits à la stabilisation de nanoparticules d’or et de palladium à partirde cations coordonnés aux triazoles “click”. La catalyse très efficace dans aqueux milieu et dans les conditions ambiantes de formation de liaison carbone-carbone a été réalisée à l’aide de très faibles quantités de ces nanoparticulesde palladium stabilisées. / The thesis concerns aspects of inorganic reaction between organic azides and terminal alkynes, the main “click” reactions. Catalysis of this reaction by copper (I)-centered dendrimers allowed us to highlight the dendritic effects originals. The dendritic and polymeric functional assemblies produced using the "click" reaction, especially with carboranes, led us to the stabilization of gold nanoparticles and palladium from cation-coordinated "click" triazole. The highly efficient catalysis in aqueous medium under ambient conditions of formation of carbon-carbon was carried out using very small amounts of stabilized palladium nanoparticles.
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Synthèse de groupements prosthétiques glucidiques : vers de nouveaux traceurs peptidiques pour l'imagerie par tomographie par émission de positons (TEP) / Synthesis of new glycosyl prosthetic groups to obtain peptidic radiotracers for Positon Emission Tomography (PET)Vala, Christine 25 May 2009 (has links)
L’utilisation de peptides ou de protéines radiomarquées au fluor-18, comme radiotraceurs pour l’imagerie par Tomographie par Emission de Positons (TEP) est en plein essor. C’est ainsi que l’objectif de notre travail a été de concevoir et de synthétiser de nouveaux groupements prosthétiques de nature glucidique, analogues du 2-Fluoro-2-[18F]désoxy-D-glucose ([18F]FDG). La particularité de ces derniers, est qu’ils sont porteurs de motifs azides afin de les lier de façon simple et efficace à des biomolécules fonctionnalisées par des groupements alcynes via la réaction de Huisgen ou réaction de « click chemistry ». Le premier objectif de ce travail a été d’étudier la position idéale d’introduction du motif azide sur le FDG, soit sur la position C-1, soit sur la position C-6. Deux stratégies de synthèse différentes ont été développées pour aboutir à deux générations de précurseurs de marquage et à leurs références froides, permettant ainsi d’évaluer l’étape d’incorporation du fluor-18. Le second objectif a été d’introduire un groupement propargyle sur la phénylalanine, la cystéine et le glutathion afin de réaliser le couplage par click chemistry avec le meilleur groupement prosthétique obtenu. / The use of peptides or proteins labeled with fluorine-18, as agents for Positron Emission Tomography (PET) is a rapidly growing field. Thus, the objective of our work was to create and to synthesize new glycosyl prosthetic groups, which are analogs of 2-deoxy-2-[18F]fluoro-D-glucose ([18F]FDG). The particularity of these compounds is their azide moiety which enables a simple and efficient ligation with alkynylated amino acids via a Huisgen type reaction or “click Chemistry”. The first goal was to study the ideal position for the introduction of the azide moiety on the sugar, either at the C-1 or C-6 position. In order to evaluate the incorporation of fluorine-18, two different strategies were developed to obtain two generations of labeled precursors and cold references. The second objective was to synthesize alkynylated phenylalanine, cysteine and gluthation derivatives to test the “click Chemistry” ligation method with the best prosthetic group.
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Synthesis and properties of triazole-containing fluorescent molecules / Synthèse et propriétés de molécules fluorescentes contenant un motif triazoleYu, Yanhua 18 July 2013 (has links)
Cette thèse se concentre sur le design et la synthèse de molécules fluorescentes contenant un motif triazole et un squelette benzothiadiazole (BTD), coumarine, 4,4-difluoro-4-bora-3a,4a-diaza-s-indacène (BODIPY) ou dicyanométhylène-4H-pyran (DCM) par chimie "click" et l’étude de leurs propriétés et applications en biologie et en chimie analytique. Dans le but de synthétiser des peptides fluorescents et d'étudier leurs applications, des acides aminés fluorescents contenant BTD, coumarine et BODIPY ont été préparés par réaction "click", et incorporés dans la somatostatine par synthèse peptidique en phase solide. Les peptides fluorescents synthétisés pourront être utilisés pour le développement d'un test de "binding" des analogues de la somatostatine. Des dérivés de BTD et BODIPY ont également été conçus et synthétisés pour servir de mimes de coudes beta- qui conduisent à des peptides courts qui pourraient être facilement détectés et étudiés en utilisant des techniques de fluorescence. La capacité des composés obtenus à former des liaisons hydrogène intramoléculaires a été étudiée par spectroscopie infrarouge. En outre, une série de macrocycles à base de BODIPY contenant un C-glucopyranoside conjugué ou non à des acides aminés tels que glycine, acid aspartique ou méthionine ont été synthétisés avec succès en utilisant une réaction "click" comme étape de macrocyclisation. Certains des composés synthétisés présentent des propriétés de reconnaissance sélective vers Cu2+, Fe3+, F- et CN- dans l'acétonitrile. Enfin, un nouveau capteur fluorescent, qui est capable de reconnaître les cations et anions d'une manière coopérative, a été conçu et synthétisé par chimie "click". Ce composé est très sensible à des combinaisons de Cu2+, F- et / ou Br- d’une manière séquence- et halogénure-dépendante. / This thesis is focused on the design and synthesis of triazole-containing fluorescent molecules based on benzothiadiazole (BTD), coumarin, 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) or dicyanomethylene-4H-pyran (DCM) by “click” chemistry and investigation of their properties and applications in biology and analytical chemistry. In the aim to synthesize fluorescent peptides and investigate their applications, fluorescent amino acids containing BTD, coumarin and BODIPY were prepared by “click” reaction, and incorporated into somatostatin through solid phase peptide synthesis. The resulting fluorescent peptides could be used for the development of a binding assay for somatostatin analogues. BTD and BODIPY derivatives have also been designed and synthesized to act as beta-turn mimics which lead to short conformationally restricted peptides that could be easily detected and studied using fluorescence techniques. The ability of the synthesized compounds to form intramolecular hydrogen bond was studied by infrared spectroscopy. Moreover, a series of BODIPY-based macrocycles containing a C-glucopyranoside conjugated or not with various amino acids such as glycine, aspartic acid or methionine have been successfully synthesized by using “click” reaction as the macrocyclization step. Some of the synthesized compounds exhibited selective recognition properties towards Cu2+, Fe3+, F- and CN- in acetonitrile. Finally, a new fluorescent sensor, which has the ability to recognize cations and anions in a cooperative way, was designed and synthesized by “click” chemistry. This compound was highly sensitive to combinations of Cu2+, F– and/or Br– in a sequence- and halide-dependent way.
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Planejamento, síntese e avaliação in vitro de híbridos 1,2,3-triazol-4-clorometilcumarinas com potencial atividade antioxidanteAlves, Anna Carolina Schneider January 2017 (has links)
Cumarinas são metabólitos secundários de plantas encontrados majoritariamente nas espécies das famílias Asteraceae, Rutaceae e Umbeliferae. Quimicamente, são compostos fenólicos, formados pela fusão de um benzeno e de um anel α-pirona, chamados de benzopironas. Elas apresentam diversas propriedades farmacológicas, associadas com baixa toxicidade. Nosso grupo de pesquisa sintetiza cumarinas pela reação de Pechmann, que ocorre através da condensação de um fenol com um β-cetoéster, na presença de um ácido de Bronsted ou Lewis. Um dos trabalhos mais recentes foi a síntese de 6-metil-4-clorometilcumarinas com um IC50 menor do que 1,6 μM para atividade antitripanocida. Em outro trabalho, um grupo de compostos de híbridos cumarina-triazol foi sintetizado e apresentou potencial atividade como agente antitumoral. Baseado nesses trabalhos, foi planejado a síntese de análogos da 6-metil-4-clorometilcumarina via condensação de Pechmann, com diferentes substituintes na posição 6, obtidos através das reações de click chemistry, no intuito de aumentar a atividade antioxidante desses compostos. Assim, para obter esses compostos, foi realizada uma condensação de Pechmann com hidroquinona e 4-cloroacetoacetato de etila. Após, uma eterificação de Williamson com brometo de propargila foi feita. Finalmente, a reação de click chemistry foi realizada sob irradiação de micro-ondas com diversas azidas previamente sintetizadas no laboratório, conduzindo à obtenção de diversos análogos da 6-metil-clorometilcumarina que foram avaliados quanto a viabilidade celular através ensaio do MTT (brometo de 3-(4,5-dimetiltiazol-2-il)-2,5-difeniltetrazólio). Também foi testada a sua capacidade antioxidante pelo método do DCFH-DA (diacetato de 2’,7’ –diidroclorofluoresceína). Dessa maneira, sob as condições reacionais utilizadas neste trabalho, foi possível sintetizar 12 compostos inéditos com rendimentos entre 9 e 61%. Os ensaios biológicos preliminares indicaram que os compostos sintetizados apresentam potencial atividade antioxidante e algumas moléculas tiveram potencialidade como agente citotóxico. / Coumarins are secondary plant metabolites typically found in species of the Asteraceae, Rutaceae and Umbeliferae families that demonstrate diverse pharmacological properties associated with low toxicity to humans. Chemically, they are phenolic compounds characterized by the fusion of benzene with an α-pyrone ring, yielding the benzopyrone nucleus. Our research group usually synthesizes coumarins by the Pechmann reaction, through the condensation of phenols with β-ketoesters catalyzed by Bronsted or Lewis acids. One of the most recent works performed at our laboratory describes the synthesis of 6-methyl-4-chloromethylcoumarins with an IC50 of 1.6 μM concerning the anti-trypanocidal activity. Another work described the syntheses of coumarin-triazole hybrids with potential activity as anticancer agents. Based on the previous works, it was designed the synthesis of 4-chloromethylcoumarins via Pechmann condensation with several substituents at the position 6 of the coumarin ring through click chemistry reactions to improve their antioxidant activities. The synthesis of the coumarins started with Pechmann condensation using hydroquinone and ethyl 4-chloroaceacetate followed by functionalization of the phenolic hydroxyl with propargyl bromide via Williamsom ether synthesis. Subsequently, the click chemistry reactions were performed under microwave irradiation using different organic azides previously synthesized at our laboratory, yielding several 6-substituted-4-chloromethylcoumarin analogues which were evaluated for cell viability through MTT 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay. Their antioxidant capacity was also tested by the DCFH-DA (2’,7’–diihydrochlorofluorescin diacetate) method. Therefore, under the reaction conditions used in this study, it was possible to synthesize 12 novel compounds with yields between 9 and 61%. Preliminary biological assays indicated that the compounds synthesized have potential antioxidant activity and some molecules had potential as an antitumor agent.
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Enzymatic Mechanisms and Chemical Probes of the Myst Family of Histone AcetyltransferasesYang, Chao 01 August 2013 (has links)
As an important posttranslational modification, protein acetylation plays critical roles in many biological processes such as gene transcription, DNA damage repair, apoptosis and metabolism. The acetylation occurs on the ε-amino group of specific lysine residues, and is catalyzed by histone acetyltransferases (HATs). In cellular contexts, HATs are found to target hundreds and thousands of substrates including histone and nonhistone proteins. Lysine acetylation changes the microenvironment of protein and may potentially alter protein activity and protein-protein interaction. The goal of this dissertation project is to investigate the impact of lysine acetylation on the catalysis of MYST HATs, and to establish the strategy for labeling substrates of the MYST HATs at cellular level. To understand the regulatory mechanism of MYST HATs, a detailed study was carried out to investigate the active site lysine acetylation of two MYST HATs (MOF and Tip60). Autoradiography and immunoblotting data shows that mutation of active site lysine differentially affects the enzyme autoacetylation activity and the cognate substrate acetylation activity. In addition, deacetylated MOF and Tip60 were prepared by using the nonspecific lysine deacetylase Sirt1. Kinetic study demonstrated that the acetylation of the active site lysine on MYST HATs marginally modulates the HAT catalysis. This work provides new insights into the regulatory mechanism of MYST catalysis. In the second part of my work, we designed and synthesized a series of Ac-CoA analogs conjugated with alkynyl or azido functional groups. Meanwhile, the active site of the MOF was engineered to expand the cofactor binding capability. Fluorescence screening was carried out to characterize the enzyme activity to Ac-CoA analogs. MOF-I317A with all analogs and MOF-I317A/H273A–5HYCoA were identified and further applied in the labeling of the cognate histone H4 protein and HAT substrates in 293T cell lysate. Visualizing of the labeled substrate was achieved using the alkynyl or azido-tagged fluorescent reporters through the copper-catalyzed azide−alkyne cycloaddition. As expected, the histone H4 protein was successfully labeled by the active enzyme-cofactor pairs. More intriguingly, multiple protein bands in cell lysate were labeled and observed. This work provides a new versatile strategy in exploring the substrates of MYST HATs at the proteomic level.
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Planejamento, síntese e avaliação in vitro de híbridos 1,2,3-triazol-4-clorometilcumarinas com potencial atividade antioxidanteAlves, Anna Carolina Schneider January 2017 (has links)
Cumarinas são metabólitos secundários de plantas encontrados majoritariamente nas espécies das famílias Asteraceae, Rutaceae e Umbeliferae. Quimicamente, são compostos fenólicos, formados pela fusão de um benzeno e de um anel α-pirona, chamados de benzopironas. Elas apresentam diversas propriedades farmacológicas, associadas com baixa toxicidade. Nosso grupo de pesquisa sintetiza cumarinas pela reação de Pechmann, que ocorre através da condensação de um fenol com um β-cetoéster, na presença de um ácido de Bronsted ou Lewis. Um dos trabalhos mais recentes foi a síntese de 6-metil-4-clorometilcumarinas com um IC50 menor do que 1,6 μM para atividade antitripanocida. Em outro trabalho, um grupo de compostos de híbridos cumarina-triazol foi sintetizado e apresentou potencial atividade como agente antitumoral. Baseado nesses trabalhos, foi planejado a síntese de análogos da 6-metil-4-clorometilcumarina via condensação de Pechmann, com diferentes substituintes na posição 6, obtidos através das reações de click chemistry, no intuito de aumentar a atividade antioxidante desses compostos. Assim, para obter esses compostos, foi realizada uma condensação de Pechmann com hidroquinona e 4-cloroacetoacetato de etila. Após, uma eterificação de Williamson com brometo de propargila foi feita. Finalmente, a reação de click chemistry foi realizada sob irradiação de micro-ondas com diversas azidas previamente sintetizadas no laboratório, conduzindo à obtenção de diversos análogos da 6-metil-clorometilcumarina que foram avaliados quanto a viabilidade celular através ensaio do MTT (brometo de 3-(4,5-dimetiltiazol-2-il)-2,5-difeniltetrazólio). Também foi testada a sua capacidade antioxidante pelo método do DCFH-DA (diacetato de 2’,7’ –diidroclorofluoresceína). Dessa maneira, sob as condições reacionais utilizadas neste trabalho, foi possível sintetizar 12 compostos inéditos com rendimentos entre 9 e 61%. Os ensaios biológicos preliminares indicaram que os compostos sintetizados apresentam potencial atividade antioxidante e algumas moléculas tiveram potencialidade como agente citotóxico. / Coumarins are secondary plant metabolites typically found in species of the Asteraceae, Rutaceae and Umbeliferae families that demonstrate diverse pharmacological properties associated with low toxicity to humans. Chemically, they are phenolic compounds characterized by the fusion of benzene with an α-pyrone ring, yielding the benzopyrone nucleus. Our research group usually synthesizes coumarins by the Pechmann reaction, through the condensation of phenols with β-ketoesters catalyzed by Bronsted or Lewis acids. One of the most recent works performed at our laboratory describes the synthesis of 6-methyl-4-chloromethylcoumarins with an IC50 of 1.6 μM concerning the anti-trypanocidal activity. Another work described the syntheses of coumarin-triazole hybrids with potential activity as anticancer agents. Based on the previous works, it was designed the synthesis of 4-chloromethylcoumarins via Pechmann condensation with several substituents at the position 6 of the coumarin ring through click chemistry reactions to improve their antioxidant activities. The synthesis of the coumarins started with Pechmann condensation using hydroquinone and ethyl 4-chloroaceacetate followed by functionalization of the phenolic hydroxyl with propargyl bromide via Williamsom ether synthesis. Subsequently, the click chemistry reactions were performed under microwave irradiation using different organic azides previously synthesized at our laboratory, yielding several 6-substituted-4-chloromethylcoumarin analogues which were evaluated for cell viability through MTT 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay. Their antioxidant capacity was also tested by the DCFH-DA (2’,7’–diihydrochlorofluorescin diacetate) method. Therefore, under the reaction conditions used in this study, it was possible to synthesize 12 novel compounds with yields between 9 and 61%. Preliminary biological assays indicated that the compounds synthesized have potential antioxidant activity and some molecules had potential as an antitumor agent.
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