Intertidal habitats are characterized by dynamic, tidally-driven fluctuations in abiotic and biotic factors. Many of the environmental stressors that vary across the intertidal (e.g., temperature, oxygen, food availability, predation pressure) are strong drivers of metabolic rate in ectotherms. As such, we predicted that there may be pronounced differences in the metabolic and stress physiology of conspecific sessile invertebrates occupying at different relative tidal heights. The common acorn barnacle Balanus glandula represents an ideal model organism in which to investigate the possibility of tidal height-dependent physiological differences, owing to their wide distribution in the intertidal zone and their eurytolerant nature. In the first chapter of my thesis, we investigate the hypothesis that B. glandula anchored in the low intertidal have a greater capacity for anaerobic metabolism than conspecifics in the high intertidal, and that this is due to increased predation pressure during submersion. Further, we explore the temporal and spatial fidelity of certain tidal-height driven trends in lactate dehydrogenase activity previously observed in our lab (i.e., higher LDH activity in low intertidal barnacles; Horn et al., 2021), and attempt to identify environmental variables that drive plasticity in LDH activity. We found that, in general, there were higher densities of B. glandula and gastropod whelk predators in the low intertidal compared to the high intertidal, but follow-up studies in the lab revealed that opercular closure in B. glandula was induced by predator exposure (Acanthinucella spirata) for less than 24h. This time frame for shell closure is unlikely to result in internal hypoxia or enhance capacity for anaerobic metabolism. We were therefore not surprised to find that LDH activity in B. glandula was likewise not affected by predator exposures (48h) carried out in the lab. After failing to find an effect of predators on LDH activity in B. glandula, we attempted to replicate the previous finding that LDH activity was highest in low intertidal populations of B. glandula. We did this at the original location in San Luis Obispo Bay, CA as well as at three novel field sites and across seasons and years. While we did observe variation in LDH activity over time and between sites, we did not consistently observe the same trend in LDH activity whereby low intertidal barnacles had the highest activity. In response to these variable patterns, we attempted to identify what environmental parameters, other than predation, might be responsible for plasticity in LDH activity. Unfortunately, neither temperature nor emersion stress – the two variables we examined – had any significant an effect on LDH activity in B. glandula. These data suggest that there must be multiple, interacting stressors – including tidal position - that influence the anaerobic metabolic capacity of B. glandula. In the second chapter of my thesis, we went on to investigate how the response to thermal stress might differ between populations of B. glandula from different vertical heights in the intertidal zone. To this end, we assessed how aerial temperature stress affected oxygen consumption rates (MO2), superoxide dismutase (SOD) activity, and time to mortality in B. glandula collected from both low and high intertidal positions. We found that barnacles from the low intertidal showed a significant increase in MO2 with higher temperature, while MO2 was unaffected by temperature in B. glandula from the high intertidal. We also observed that SOD activity levels were higher in the high intertidal barnacles compared to the low intertidal barnacles, although neither group was increasing SOD activity under higher temperature. Finally, we observed significantly longer survival times during thermal stress in barnacles from the high intertidal zone (e.g., LT50 = 8.75 h vs 5 h at 33˚C for the high and low barnacles, respectively), although this advantage seemed to be lost with the addition of desiccation stress at these same temperatures. It is evident that life in highest reaches of the intertidal zones is physiologically challenging, and this has resulted in a population of B, glandula barnacles that are less sensitive to and better suited to tolerate temperature extremes than conspecifics in the lowest intertidal regions. Understanding how habitat variation may differentially impact the metabolic and thermal stress physiology of B. glandula is increasingly important as climate change progresses. This is particularly significant considering that organisms in the intertidal already reside within a relatively stressful environment and may be living closer to their thermal tolerance limits than animals from less extreme habitats.

Previous studies have shown that soil erodibility and critical shear stress are highly influenced by weathering processes such as freeze-thaw cycling and wet-dry cycling. Despite over forty years of research attributing changes in soil properties over time to climate-dependent variables, little quantitative information is available on the relationships between streambank erodibility and critical shear stress and environmental conditions and processes that enhance streambank erosion potential. The goal of this study was to investigate temporal changes in streambank erodibility and critical shear stress due to surface weathering. Soil erodibility and critical shear stress were measured monthly in situ using a multi-angle submerged jet test device. Environmental and soil data were also collected directly at the streambank surface to determine freeze-thaw cycles, soil moisture, soil temperature, bulk density, soil erodibility, critical shear stress, and other atmospheric conditions that could impact bank erosion potential. Statistical tests, including a nonparametric alternative to ANOVA and multiple comparison tests, were used to determine if temporal changes in soil erosion potential were greater than spatial differences. Regression analyses were also utilized to identify the factors contributing to possible changes in soil erodibility, critical shear stress, and bulk density. The nonparametric alternative to ANOVA in combination with Dunn's nonparametric multiple comparison test showed soil erodibility was significantly higher (p=0.024) during the winter (November - March) and the spring/fall (April - May, September - October). Regression analyses showed 70 percent of soil erodibility variance was attributed to freeze-thaw cycling alone. Study results also indicated that bulk density is highly influenced by climate changes since gravimetric water content and freeze-thaw cycles combined explain as much as 86 percent of the variance in bulk density measurements. Results of this study show significant amounts of variation in the resistance of streambank soils to fluvial erosion can be attributed to subaerial processes, specifically changes in soil moisture and temperature. These results have potential implications for streambank modeling and restoration projects that assume constant values for soil erodibility. Watershed models and restoration designs should consider the implications of changing soil erodibility during the year in model development and stream restoration designs. / Master of Science

An excised animal larynx model has been used in many studies to better understand the physiological and anatomical properties of the human larynx. One difference between an ex vivo model and an in vivo model is that ion loss occurs postmortem. To compensate for this in the excised model, researchers most commonly use a preservation method that includes completely submerging the specimen in isotonic saline (0.9% Na+Cl-) and then flash freezing it in liquid nitrogen. The flash freezing method allows researchers to maintain the integrity of the structures while also being able to gather specimens as they become available. Not enough research has been done to understand the effects of a preservation method on the outcomes of the study. Additionally, no common method has been established for preservation across studies to ensure that results are not being influenced by this variable. This prospective, mixed experimental design study includes three groups, a control group and two experimental groups. The control group consisted of 10 bench-mounted porcine larynges that were soaked in isotonic saline and flash frozen with liquid nitrogen. Prior to the experiment, the frozen larynges were thawed overnight before trials. The other two groups consisted of 10 bench-mounted porcine larynges each; these larynges were soaked in either isotonic saline or Ringers solution, a balanced fluid used in vivo to counteract dehydration. Larynges from these two groups were kept fresh and stored in a refrigerator overnight before trials. On the day of experimentation, each larynx was mounted on a bench top setup including three micropositioners to stabilize, adduct, and elongate the vocal folds. All the larynges were connected to a pseudolung via the trachea and humidified air was passed through to the vocal folds until phonation was achieved. Phonatory trials consisted of brief phonation followed by 5-minute desiccation intervals until phonation was no longer achieved. Phonation threshold flow (PTF), defined as the flow observed at the onset of phonation, was observed during each phonation trial; and flow values were compared within and between groups. Statistically significant differences were found between the Ringers group and the fresh saline group as well as between the Ringers group and the frozen saline group, indicating that PTF is influenced by the larynx preservation method.

Research was conducted in 2014 to evaluate the efficacy of harvest-aid systems and the performance of harvest aids applied at various timings in Mid-South soybean production. Evaluations included yield, desiccation, green stems and pods, and seed quality. Saflufenacil did not perform as well as the producer standard 14 DAT at the Starkville, MS location with desiccation levels of 78 and 98%, respectively. However, similar performance was observed 14 DAT at the Brooksville, MS location. When applied at R6.5, paraquat based treatments improved desiccation and reduced green stem 7 DAT compared to other treatments. No yield differences were observed between harvest aid treatments. However, yield differences were observed between the R6.0 and R6.5 timings. These data suggest saflufenacil is an effective harvest aid option, but may require up to 14 days for optimum desiccation. In addition, yield is not impacted by harvest aid product, but rather the timing of the application.

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Studying the effects of extreme conditions, such as high temperatures and low humidity, on soil properties is important to various disciplines, including geotechnical engineering, soil science, waste management, crop management, and ceramics. The goal of this research is to investigate the effect of environmental and geometrical factors on microstructure, desiccation cracking, and CO2 flux in clays. The objectives of this research are threefold. (1) Understand the effects of temperature on the microstructure of clay soils; (2) develop a standardized procedure for studying desiccation cracking in a laboratory setting with reliable and repeatable results; and (3) develop an environmental chamber capable of monitoring CO2 flux through a soil sample large enough to accommodate a fully developed crack network. To accomplish these objectives, an array of laboratory testing was conducted. First, this study examines the effects of extreme temperatures on the microstructural properties of clay using FESEM, cation-exchange capacity (CEC) tests, thermal gravimetric analysis (TGA), and Brunauer–Emmett–Teller (BET) surface area analyzer. Second, a standardized procedure for producing accurate and repeatable laboratory tests on the desiccation cracking of soils is presented. The procedure includes specifications for sample collection, material preparation and characterization (including microstructural properties), and the determination of a representative elemental area (REA) for a fully developed crack network. Finally, a new climatic chamber capable of controlling temperature and relative humidity is designed and tested. The chamber can monitor CO2 flux through a fully developed crack network, enabling fundamental research on the relationship between desiccation cracking and the oxidation of soil organic carbon. The key findings indicate a dependency of soil microstructure on temperature changes. CEC and BET surface area significantly decrease with temperatures beyond 100ºC, indicating a relationship that needs further study. Additionally, compacted and slurry cracking behavior was found to be sensitive to boundary geometry and sample thickness. A REA was identified for each slurry sample thickness. The procedures of this research can be repeated for other soil types and used to connect existing and future research to improve understanding of desiccation cracking behavior, and to study the effects of desiccation cracking on other important geo-environmental phenomena.

Climate change is predicted to have a global effect on temperatures and precipitation rates throughout the world. The UK Climate projections expect that in the United Kingdom this will lead to warmer, drier summers and wetter winters, where events of extreme rainfall are more common. These changes are expected to impact on slope hydrology, and concurrently slope stability. In the United Kingdom this impact is expected to be negative, whereas in other countries, such as Italy and France it could lead to slopes being more stable. Infrastructure slopes in the UK range in age and construction quality, they are susceptible to serviceability problems, characterised by heterogeneous material properties and can fail unexpectedly due to progressive reduction in soil shear strength. In this thesis the effects of climate change on a highway cutting in the south of England are modelled, using numerical methods. A finite element model is created and developed in the software package GeoStudio VADOSE/W. The model has been validated against observed pore water pressure trends and magnitudes and is shown to be able to accurately replicate the behaviour. By incorporating the effects of desiccation cracking on the soil s material properties, by the means of bimodal soil water characteristic curve and hydraulic conductivity function, the replication of these trends is improved even further. A series of future climate series were created using the UKCP09 Weather Generator 2.0. These series were implemented with the VADOSE/W model as climate boundary conditions and models were run, and the results compared to control, current climate results. The results were investigated by the means of statistical analyses which revealed that climate change will have some significant effects on the slope s hydrology, increasing magnitudes of evapotranspiration greatly which can have further significant effects on the magnitude of suctions developing in the slope throughout the summer. It is thought that the results suggest that climate change will not have significant negative effects on slope stability. However it is important to remember that the results only apply with certainty to the specific slope and climate change scenario investigated here. The methods used and developed within this thesis can be extended to other locations, in the UK and internationally, analysing the effects of different climate change scenarios.

The inclusion of lime in burials is observed in historical and archaeological records, in contemporary mass graves and forensic cases. Clearly there are controversies within the literature and there is a general misconception of the effects of lime on decomposition. Recent casework in Belgium and the UK involving the search for human remains buried with lime, have demonstrated the need for a more detailed understanding of the effect of different types of lime on cadaver decomposition and its micro-environment. Field and laboratory experiments using pigs as human body analogues were undertaken to obtain a better understanding of the taphonomic processes that govern lime burials. The changes observed in the experiments were related back to archaeological parallels in which white residues have been found. The combined results of these studies demonstrate that despite conflicting evidence in the literature, hydrated lime and quicklime both delay the initial stages of the decay process but do not arrest it completely. The end result is ultimately the same: skeletonisation. Furthermore this study stresses the importance of the specific microenvironment in taphonomic research and highlights the need for chemical analysis of white residues when encountered in a burial. Not all white powder is lime. White residue could be identified as calcium carbonate, building material, body decomposition products, minerals or degraded lead. This study has implications for the investigation of clandestine burials and for a better understanding of archaeological plaster burials. Knowledge of the effects of lime on decomposition processes also have bearing on practices involving the disposal of animal carcasses and potentially the management of mass graves and mass disasters by humanitarian organisation and DVI teams.