No / Contradictions and misconceptions regarding the effect of lime on the decay of human remains have demonstrated the need for more research into the effect of different types of lime on cadaver decomposition. This study follows previous research by the authors who have investigated the effect of lime on the decomposition of human remains in burial environments. A further three pig carcasses (Sus scrofa), used as human body analogues, were observed and monitored for 78 days without lime, with hydrated lime (Ca(OH)2) and with quicklime (CaO) in the taphonomy laboratory at the University of Bradford. The results showed that in the early stages of decay, the unlimed and hydrated lime cadavers follow a similar pattern of changes. In contrast, the application of quicklime instigated an initial acceleration of decay. Microbial investigation demonstrated that the presence of lime does not eliminate all aerobic bacteria. The experiment also suggested that lime functions as a sink, buffering the carbon dioxide evolution. This study complements the field observations. It has implications for the investigation of time since death of limed remains. Knowledge of the effects of lime on decomposition processes is of interest to forensic pathologists, archaeologists, humanitarian organisations and those concerned with disposal of animal carcasses or human remains in mass disasters.

Vertisols cover a hydrologically very significant area of semi-arid regions, and thus understanding of water flow and solute accumulation is very relevant to agricultural activity and water resources management. Previous works suggest a conceptual model of desiccation-crack-induced salinization where salinization of sediment in deep section of the vadose zone (up to 4 m) is induced by subsurface evaporation due to convective air flow in desiccation cracks. This thesis presents a conceptual model of water flow and solute transport in vertisols, and its numerical implementation. The model uses a single-porosity material but unconventionally prescribes a boundary condition representing a deep crack in soil and uses the unsaturated hydraulic conductivity as one of the fitting parameters. The numerical model is bound to one location close to a dairy farm waste pond, but the application of the suggested conceptual model could be possibly extended to all semi-arid regions with vertisols. Simulations were conducted using several modelling approaches with an ultimate goal of fitting the simulation results to the controlling variables measured in the field: water content, and chloride salinity of pore water. The development of the model was engineered in numerous steps; all computed as forward solutions by...

Mes travaux de recherche ont eu pour but d’analyser la diversité des microorganismes des trois domaines du vivant présents dans des biofilms phototrophes exposés à l’air, se développant sur des substrats minéraux divers, afin d’essayer, d’une part, de répondre à des questions de diversité et de biogéographie et, d’autre part, d’étudier le processus de colonisation par le biais d’expériences d’exposition contrôlées.J’ai ainsi caractérisé, essentiellement par des approches moléculaires basées sur l'analyse des banques des gènes d'ARNr de la petite sous-unité (SSU rDNAs) et sur des analyses d'empreintes communautaires, la diversité microbienne (procaryote et eucaryote) formant des biofilms matures (exposés depuis plusieurs années) dans plusieurs sites géographiques en Irlande du Nord, en France et en Ukraine, dans la région de Chernobyl. Dans ces biofilms soumis à forte pression sélective, nous avons mis en évidence beaucoup de microorganismes hétérotrophes et phototrophes, mais avec une diversité relativement restreinte en comparaison à d’autres milieux comme les sols ou les systèmes aquatiques. Les archées étaient absentes. Les conditions environnementales auxquelles ce type de biofilm est constamment exposé comme l’irradiation, la dessiccation et la limitation des nutriments sélectionnent des microorganismes qui développent des stratégies pour s’adapter comme, entre autres, la production de pigments. Ce sont des microorganismes fréquemment retrouvés dans des milieux désertiques extrêmes et résistants aussi aux radiations ionisantes qui ont ainsi été identifiés, notamment des Deinococcales et des Actinobacteria, ou encore des champignons ascomycètes (Ascomycota). Parmi les organismes phototrophes, nous avons dénombré des Cyanobacteria, des algues vertes (Chlorophyta) et des Streptophyta. Nous avons mis en évidence que les facteurs environnementaux influencent la composition des biofilms. Toutefois, tandis que la composition de la communauté bactérienne est fortement dépendante de la nature du substrat ou elle se développe, la composition des communautés microbiennes eucaryotes dépend de la distance géographique. Nous avons également mené des expériences de colonisation en exposant un même substrat minéral dans trois sites géographiques en Irlande du Nord et en France. L'analyse de la diversité microbienne lors du processus de colonisation a révélé des changements importants dans la composition des communautés, que ce soit pour les procaryotes ou pour les eucaryotes avec, cependant, des comportements différents de ces deux groupes de microorganismes. Dans le cas des bactéries, on observe une transition des Gammaproteobacteria, qui dominent les temps 0-6 mois et qui correspondent vraisemblablement aux cellules inactives en dispersion, vers des Betaproteobacteria, Bacteroidetes, Alphaproteobacteria et Actinobacteria dans des phases successives de formation du biofilm. Par contre, dès leur détection sur le substrat minéral, les eucaryotes sont massivement dominés par des champignons ascomycètes et basidiomycètes, des algues vertes ainsi que d'autres composantes minoritaires comme des ciliés, étant détectées dans des stades plus tardifs. Nos résultats montrent que les organismes hétérotrophes sont pionniers dans la formation de ces biofilms, ce qui permet d'émettre l'hypothèse qu'ils facilitent l'installation des cyanobactéries et surtout des algues vertes. Ils montrent aussi que le processus d'assemblage des communautés bactériennes dépend du temps de colonisation, alors que le site géographique détermine celui des microorganismes eucaryotes. Ces différences majeures de comportement pourraient être expliquées par des modes de vie différents entre les organismes de ces deux grands groupes. / The major objective of my PhD work was the analysis of the diversity of microorganisms from the three domains of life associated with phototrophic biofilms developing on different mineral substrates exposed outdoors. These studies aimed at answering questions about microbial diversity and biogeography and also at studying the colonization process through controlled exposure experiments. I have thus characterized, essentially by molecular methods based on small subunit (SSU) rRNA gene libraries and fingerprinting analyses the diversity of prokaryote and eukaryote microorganisms forming mature biofilms (exposed for several years) in various geographic sites in Northern Ireland, France and Ukraine, in the Chernobyl area. In these biofilms, subjected to strong selective pressure, we found many heterotrophic and phototrophic microorganisms, but their diversity was limited when compared to that of other environments such as soils or aquatic systems. Archaea were absent from all biofilms. The environmental conditions to which these biofilms are constantly exposed, such as irradiation, desiccation and nutrient limitation select for organisms that develop particular adaptive strategies including, among others, pigment production. The microorganisms identified in these biofilms are also frequently found in extreme, desert environments and are known for their resistance also to ionizing radiation, such as Deinococcales and Actinobacteria or ascomycete fungi (Ascomycota). Among phototrophic lineages, we identified Cyanobacteria, Chlorophyta (green algae) and sometimes Streptophyta. We showed that environmental parameters influenced biofilm microbial communities. However, whereas the bacterial community composition depends on the nature of the substrate, the microbial eukaryotic community composition depends on the geographic distance. We also carried out colonization experiences exposing outdoors the same mineral substrate in three different sites in Northern Ireland and France. The analysis of microbial diversity along the colonization process revealed important changes in community composition both for prokaryotes and eukaryotes, although the behavior of the two groups was different. In the case of bacteria, we observed a transition from Gammaproteobacteria, which dominated the initial 0-6 months and which likely corresponded to inactive dispersive cells, towards Betaproteobacteria, Bacteroidetes, Alphaproteobacteria and Actinobacteria in successive steps of biofilm formation. By contrast, since their detection on mineral substrates, eukaryotes were massively dominated by ascomycete and basidiomycete fungi, green algae and other minor components such as ciliates were detected in later stages of biofilm formation. Our results show that heterotrophic organisms are pioneers in the formation of these biofilms, leading to the hypothesis that they facilitate the settlement of Cyanobacteria and, especially, of green algae. They also show that the process of bacteria community assembly depends on colonization time whereas the geographic site determines that of eukaryotic microorganisms. These major differences might be explained by different lifestyles between organisms of the two groups

Immune activation is generally acknowledged to be costly. These costs are frequently assumed to result from trade-offs arising due to the reallocation of resources from other life-history traits to be invested in immunity. Here, I investigated the energetic basis of the costs associated with immune activation in Drosophila melanogaster. I found that immune activation significantly reduced fly fecundity (45%) and also caused a decline in metabolic rate (6%) but had no effect on body weight. To understand the factors behind reduced fecundity and metabolic rate I measured feeding and found that food intake was reduced by almost 31% in immune-challenged D. melanogaster. These findings suggest that fecundity costs of immune activation result not from the commonly accepted resource reallocation hypothesis but probably because resource acquisition is impaired during immune responses. The individuals of any animal population generally vary greatly in their ability to resist infectious disease. This variation arises due to both environmental heterogeneity and genetic diversity. Genetic variation in disease susceptibility has generally been considered to lie in the nuclear genome. Here, for the first time, I explored the influence of mitochondrial genetic (mtDNA) variation on disease susceptibility. I crossed 22 mitochondrial haplotypes onto a single nuclear genome and also studied epistasis interactions between mitochondrial and nuclear genomes (mitonuclear epistasis) by crossing five haplotypes onto five different genetic backgrounds. I found that fly susceptibility to Serratia marcescens was influenced significantly by mtDNA allelic variation. Furthermore, the effect of mitonuclear epistasis on fly susceptibility to S. marcescens was twice as great as the individual effects of either mitochondrial or nuclear genome. However, susceptibility to Beauveria bassiana was not affected by mtDNA allelic variation. These findings suggest the mitochondrial genome may play an important role in host-parasite coevolution. The Mother’s Curse hypothesis suggests that sex-specific selection due to maternal mitochondrial inheritance means that mitochondria are poorly adapted to function in males, resulting in impaired male fitness. Mother’s Curse effects have previously only been studied for two phenotypic traits (sperm-infertility and ageing) and their generality for broader life-history has not been explored. I investigated the impact of mtDNA allelic variation on 10 phenotypic traits and tested whether the patterns of phenotypic variation in males and females conformed to the expectations of the Mother’s Curse hypothesis. I found that seven of the 10 traits were significantly influenced by mtDNA allelic variation. However, there was no evidence that the effects of this variation differed between males and females. I therefore concluded that Mother’s Curse is unlikely to be a general phenomenon, nor to provide a general explanation for sexual dimorphism in life-history traits. Overall, this thesis explored the impacts of immunity costs, mitochondrial genetic variation, mitonuclear epistasis and sex-specific mitochondrial selection on D. melanogaster life-history.

L'objectif dans cette recherche expérimentale est de contribuer à la compréhension des phénomènes de l'endommagement et de la fissuration dans les sols argileux saturés sous chargement hydrique (dessiccation) et mécanique (chemins de contrainte). L'étude mécanique est axée sur l'identification des propriétés élastiques du matériau endommagé sous chargement triaxial à différents niveaux et chemins de contrainte. Les principaux points traités étaient, l'influence de la contrainte de consolidation (p'ic), du degré de surconsolidation (OCR) et du chemin de contrainte sur la vitesse d'onde de compression. Les résultats montrent que les propriétés élastiques sont affectées et évoluent avec la déformation. La contractance semble augmenter la vitesse d'onde de compression à mesure que p'ic croît et densifie le matériau. En revanche, la dilatance semble plutôt diminuer la vitesse d'onde de compression. Par ailleurs, différents chemins triaxiaux conduits à un niveau de contrainte donné ont montré que les vitesses d'onde sont très proches si les chemins sont normalement consolidés. Les vitesses sont proches également si les chemins sont surconsolidés. En revanche, à un même état de contrainte, la vitesse d'onde est différente si on compare un chemin normalement consolidé avec un chemin surconsolidé. La deuxième partie de l'étude porte sur une analyse approfondie des mécanismes d'amorçage et de propagation des fissures sous dessiccation libre et contrôlée d'une argile initialement saturée. L'analyse via la corrélation d'images numériques (CIN) a permis, en premier lieu, une caractérisation multiéchelle du phénomène de retrait opéré au cours du séchage. Différents phénomènes ont été identifiés : le phénomène de relaxation, caractérisé par un changement de signe de la déformation locale extension / compression, le mécanisme de fissuration par extension (mode I), identifié par la cartographie des directions des déformations principales. L'étude a été complétée par des essais de traction indirecte par flexion 3 points réalisés sur des poutrelles de kaolin K13 initialement soumises à différentes succions. L'effet de la succion initiale sur la résistance à la traction a donc été observé. Les résultats montrent que plus la succion initiale est élevée, plus la pente de la courbe de variations de la résistance à la traction est élevée. D'autre part, la déformation de la zone tendue de la poutrelle atteint sa valeur critique lorsque la contrainte atteint la résistance maximale à la traction de l'argile / The objective of this experimental research is to contribute to understanding phenomena of damage and cracking in saturated clay soils under hydric loading (desiccation) and mechanical loading (stress paths). Mechanical study focuses on identifying the elastic properties of the damaged material under triaxial loading at different levels and stress paths. The main issues were the influence of; the consolidation stress (p'ic), the overconsolidation ratio (OCR) and the stress path on the compression wave velocity. The results show that the elastic properties are affected and evolve with strain. Contractancy appears to increase the compression wave velocity as p'ic increase and densifies the material. However, dilatancy seems rather decrease the compression wave velocity. Moreover, various triaxial paths performed at a given stress level showed that the wave velocities are very close if the paths are normally consolidated. Velocities are also close if the paths are overconsolidated. However, at the same stress state, the wave velocity is different when comparing a normally consolidated path with an overconsolidated path. The second part of the study focuses on a thorough analysis of the cracks' initiation and propagation mechanisms under free and controlled desiccation on initial saturated clay. Analysis via the digital image correlation (DIC) allowed, first, a multi-scales characterization of the shrinkage phenomenon operated during drying. Different phenomena were identified; the relaxation phenomenon characterized by a change of the local strain's sign extension / compression, the cracking mechanism by extension (mode I) identified by the map of the directions of the principal strains. The study was completed with indirect tensile tests by bending performed on kaolin k13 beams initially submitted to different suctions. The effect of the initial suction on the tensile strength has been observed. The results show that more the initial suction is high, the greater the slope of the curve of changes in the tensile strength is high. On the other hand, strain of the tension zone of the beam reaches its critical value when the stress reaches the maximum tensile strength of the clay

The Matlabas mire, an actively peat accumulating wetland, is located in the headwaters of the Matlabas River, Marakele National Park, Limpopo Province, South Africa. Various seepage zones and artesian peat domes are contained in this peatland that consists of two tributaries of which the western one is partially channelled. The occurrence of decaying peat domes and desiccated areas with terrestrial vegetation, as well as the apparent erosion on the western tributary, have raised concerns on the health of this wetland. A network of piezometers was installed in the mire and results confirm that the system is fed primarily from seepage from the slopes of the catchment. Chemical analysis and temperature recorded indicate an isolated groundwater source of which the water does not mix with surface water. This is linked with isotope analysis of the age of peat in various sections of the mire. Erosion was attributed to anthropogenic changes in the catchment. Management recommendations include rehabilitation and reinstating the driving forces that support the mire. / Environmental Sciences / M. Sc. (Environmental Management)

Freshwater green algae within species complex Haematococcus pluvialis are best natural producers of secondary carotenoid astaxanthin famous for its strong antioxidant activity. Despite worldwide distribution, great biotechnological potential and extensive literature dealing with different approaches to the cultivation of these organisms, there still remains surprising gaps in knowledge of their complex life cycle and behaviour. First uncertainty concerns asexual cell division of zoospores, hypothetically limited to five cell doublings (Lee & Ding 1994). No such genetic limitation was observed in this thesis, number of cell divisions is thus influenced mainly by cultivation conditions. There is still considerable uncertainty regarding to the asexual reproduction, as well. Ambiguity might be caused by scarce observation of the whole process of gametogenesis and conjugation of gametes. Published studies differed in some particular points. Unfortunately, we did not succeed in induction of gametogenesis despite broad scale of tested cultivation conditions applied to two different species within the H. pluvialis complex, namely H. pluvialis and H. rubicundus. This failure might be caused by heterothalism of the studied strains. Haematococcus pluvialis inhabits mainly ephemeral pools. Its ability to...

The natural environments of organisms present a multitude of biotic and abiotic challenges that require both short-term ecological and long-term evolutionary responses. Though most environmental response studies have focused on effects at the ecosystem, community and organismal levels, the ultimate controls of these responses are located in the genome of the organism. Soil nematodes are highly responsive to, and display a wide variety of responses to changing environmental conditions, making them ideal models for the study of organismal interactions with their environment. In an attempt to examine responses to environmental stress (desiccation and freezing), genomic level analyses of gene expression during anhydrobiosis of the Antarctic nematode Plectus murrayi was undertaken. An EST library representative of the desiccation induced transcripts was established and the transcripts differentially expressed during desiccation stress were identified. The expressed genome of P. murrayi showed that desiccation survival in nematodes involves differential expression of a suite of genes from diverse functional areas, and constitutive expression of a number of stress related genes. My study also revealed that exposure to slow desiccation and freezing plays an important role in the transcription of stress related genes, improves desiccation and freezing survival of nematodes. Deterioration of traits essential for biological control has been recognized in diverse biological control agents including insect pathogenic nematodes. I studied the genetic mechanisms behind such deterioration using expression profiling. My results showed that trait deterioration of insect pathogenic nematode induces substantial overall changes in the nematode transcriptome and exhibits a general pattern of metabolic shift causing massive changes in metabolic and other processes. Finally, through field observations and molecular laboratory experiments the validity of the growth rate hypothesis in natural populations of Antarctic nematodes was tested. My results indicated that elemental stoichiometry influences evolutionary adaptations in gene expression and genome evolution. My study, in addition to providing immediate insight into the mechanisms by which multicellular animals respond to their environment, is transformative in its potential to inform other fundamental ecological and evolutionary questions, such as the evolution of life-history patterns and the relationship between community structure and ecological function in ecosystems.

No description available.

No / OBJECTIVES: To compare the properties of solid dispersions of felodipine for oral bioavailability enhancement using two different polymers, polyvinylpyrrolidone (PVP) and hydroxypropyl methylcellulose acetate succinate (HPMCAS), by hot-melt extrusion (HME) and spray drying. METHODS: Felodipine solid dispersions were prepared by HME and spray drying techniques. PVP and HPMCAS were used as polymer matrices at different drug : polymer ratios (1 : 1, 1 : 2 and 1 : 3). Detailed characterization was performed using differential scanning calorimetry, powder X-ray diffractometry, scanning electron microscopy and in-vitro dissolution testing. Dissolution profiles were evaluated in the presence of sodium dodecyl sulphate. Stability of different solid dispersions was studied under accelerated conditions (40 degrees C/75% RH) over 8 weeks. KEY FINDINGS: Spray-dried formulations were found to release felodipine faster than melt extruded formulations for both polymer matrices. Solid dispersions containing HMPCAS exhibited higher drug release rates and better wettability than those produced with a PVP matrix. No significant differences in stability were observed except with HPMCAS at a 1 : 1 ratio, where crystallization was detected in spray-dried formulations. CONCLUSIONS: Solid dispersions of felodipine produced by spray drying exhibited more rapid drug release than corresponding melt extruded formulations, although in some cases improved stability was observed for melt extruded formulations.