Cryopreservation of germplasm of aquatic species offers many benefits to the fields of aquaculture, conservation and biomedicine. Although successful fish sperm cryopreservation has been achieved with many species, there has been no report of successful cryopreservation of fish embryos and late stage oocytes which are large, chilling sensitive and have low membrane permeability. In the present study, the sensitivity to chilling and toxicity of cryoprotectants of early stage zebrafish ovarian follicles were studied before designing protocols for their cryopreservation using controlled slow cooling. The effect of cryoprotectant, freezing medium, cooling rate, method for cryoprotectant removal, post-thaw incubation time and ovarian follicle developmental stage were investigated. In vitro culture method for early stage zebrafish ovarian follicles were also developed. The studies showed that stage I and II ovarian follicles are less sensitive to chilling than stage III follicles and methanol was the least toxic cryoprotectant. 4M methanol in potassium chloride (KCl) buffer was found to be the optimal cryoprotective solution and the optimum cooling rate was 4 °C/min for stage I and II follicles. Although the highest survivals after 2 h post-thawed incubation were 50.7 ± 4.0% for stage II ovarian follicles obtained with FDA+PI staining, ADP/ATP ratios of the cryopreserved follicles were significantly increased indicating increased cell death. Furthermore, in vitro culture experiments showed that there was no growth for stage I and II ovarian follicles after cryopreservation, indicating that successful cryopreservation of early stage zebrafish ovarian follicles at liquid nitrogen still remains elusive. From in vitro culture study, 90% L-15 medium at pH 9.0 containing 10 IU/ml hCG was effective for in vitro culture of stage I and II ovarian follicles. Systematic study on cryopreservation of early stage fish ovarian follicles at liquid nitrogen temperature is reported ii here for the first time. The results will provide useful information on the future development of protocol design for successful cryopreservation of early stage fish ovarian follicles.

High quality fish oocytes are essential for in vitro maturation (IVM), in vitro fertilization (IVF) protocols, and for use in cryopreservation. It is important to develop methods for assessing oocyte quality for applications in aquaculture, the preservation of endangered species and managing fish models used in biomedical research. The lack of reliable methods of evaluating oocyte quality limits progress in these areas. The present study was undertaken to develop new methods to assess ovarian follicle viability and quality of stage III zebrafish (Danio rerio) ovarian follicles. The methods developed were then applied to study the impact of cryoprotectant and/or cryopreservation procedures. A vital staining procedure, not previously used with zebrafish oocytes, has been investigated. FDA-PI (Fluorescein diacetate-Propidium Iodide) staining was found to be a more sensitive then currently used viability tests and it could also be applied to all ovarian follicles developmental stages. Mitochondrial activity and distribution as biological markers was investigated with the mitochondrial membrane potentialsensitive dye JC-1- (5,5’,6,6’-tetrachloro-1,1’,3,3’-tetraethylbenzimidazolylcarbocyanine iodide). Confocal microscopy, Cryo-scanning and electron microscopy studies were undertaken to determine mitochondria distributional arrangement within the ovarian follicle. This provided new information on zebrafish ovarian follicle structure, and showed that mitochondria exhibited a contiguous distribution at the margin of the granulosa cell layer surrounding stage III zebrafish oocytes. Cryoscanning results showed a polygonal structure of the vitelline envelope, which is reported here for the first time with the mitochondrial distributional arrangement in the granulosa cell layer. Mitochondrial distribution and the evaluation of mitochondrial activity proved to be sensitive markers for ovarian follicle quality, providing more detailed information on cryoprotectant impact. The measurement of ATP levels, ADP/ATP ratio and mtDNA copy number were also undertaken following cryoprotectant exposure. These findings, together with the observation of mitochondrial distribution, suggested that even cryoprotectant treatments that are considered to have little or no toxicity can have a deleterious effect on mitochondrial activity, potentially compromising oocyte growth and embryo development. Therefore, a further optimization of the currently used protocol may need to be considered. The study of organelle distribution and organisation would support in vitro maturation and oocyte development fields, as well as their use as biological markers for quality determination. These findings will contribute to a better understanding of oogenesis/folliculogenesis processes in fish.

In aquaculture, short term chilled storage has been used to transport brood stock fish embryos for genetic improvement programmes. It is therefore important to understand the effect of chilling on embryos at both developmental and molecular levels. In the present study, gene expression patterns in zebrafish embryos were studied before investigations were carried out on the effect of chilling on gene and protein expression in these embryos. The gene expression results obtained in different developmental stages using conventional PCR showed that, only sox genes were expressed throughout the tested developmental stages from 30% epiboly to 6 somites. Quantitative RT-PCR was then used to investigate sox gene expression patterns during chilling of 50% epiboly stage embryos at 0°C for up to 180 min and also after warming. Significant decreases in sox2 and sox3 expressions were observed when compared to those of controls following chilling whilst significant increases of expressions of the two genes were observed after warming in the embryos chilled for 30 and 60 min. Studies on the impact of cryoprotectant MeOH on sox genes and protein expression showed that 50% epiboly stage zebrafish embryos could tolerate chilling for up to 6 h with or without MeOH. It was observed that expression of all three sox genes were significantly decreased following chilling for 3 h at 0°C. However the degree of decrease was less pronounced in embryos chilled with different concentrations of MeOH. Significant increases in sox genes were observed in hatching stage embryos chilled with 1 M MeOH for 3h but subsequent sox2 and sox19a protein expression was not affected. The effect of long term chilling (18h) on sox gene and protein expression in 50% epiboly stage embryos was also investigated. Improved hatching rates (56% ± 5) were achieved when embryos were chilled with 1 M MeOH + 0.1 M sucrose. Results from gene expression studies showed a stable sox2 gene expression in 18 h chilled embryos in cryoprotectant mixture when compared to that of embryos chilled without cryoprotectant mixture. Similar patterns were observed when the expression of sox2 and sox3 protein was investigated. This is the first study carried out on the effect of chilling in early stage zebrafish embryos at the molecular level. The results obtained from the present study provided useful information on the molecular mechanisms of the effect of chilling on zebrafish embryos and will have important implications in designing chilled storage protocols for fish embryos.

In order to combine previous observations from different sources on sex determination, and to identify sex chromosomes including the major sex determination locus in Nile tilapia, physical and genetic maps based on sex-linked markers and genes (such as sex-linked AFLPs, microsatellites, ovarian aromatase and DMO genes) were integrated and anchored. An accurate physical map using FISH techniques on mitotic cells was developed based on a previous map and 23 tilapia BAC clones previously assigned to linkage groups (LGs) 1, 3, 6, 7, 10 and 12; and on meiotic cells, 2 BAC clones containing the SLAM OniY227 and the dmrt4 gene were mapped. The six linkage groups were then assigned to different chromosomes, but surprisingly, the putative sex LG1 was located to a small submetacentric chromosome and not to the larger subtelocentric chromosome 1, where LG3 was assigned instead. The other LGs were assigned to different chromosomes and oriented with respect to the centromeres. A detailed comparison of the physical distribution of markers on chromosome 1 with respect to LG3 revealed a suppression in recombination in the subtelomeric region of the q arm between the marker GM354 (0 cM) and clcn5 (29 cM) and an abrupt increment of recombination between clcn5 (29 cM) and GM128 (77 cM) close to the centromere (Flpter=0.2). The unpairing region (20% of the total length) observed on the larger bivalents of XY fish during early pachytene in meiotic cells has been confirmed by DAPI staining and FISH to be at the terminal part of the q arm, opposite to the centromere. Comparison with six other tilapia species (2n=44) revealed a well conserved karyological distribution of the suspected LGs associated with sex determination (1 and 3). Besides, in O. karongae (2n=38) it was shown by SATA and UNH995/UNH104 marker hybridisation that LG1 has been re-arranged into the subtelomeric chromosome 2 as a result of a telomere-telomere fusion. A pool of 15 tilapia BAC clones previously localised on chromosome 1 and containing sex-linked AFLPs, dmrt1, dmrt4 and several SINEs were screened for new microsatellites; BACs were digested with SAU3AI and TC, GT, ATCT and CTGT probes radio-labelled with 32P. The high abundance of repetitive sequences in the BACs used led to only one useful polymorphic and co-dominant marker being obtained, associated to a BAC clone containing a copy of the dmrt1 gene on chromosome 1 (Flpter=0.85). Four linkage maps were constructed from an XY male, XY neofemale, XX neomale and XX female, mapping 4 and 8 markers on LG1 and LG3 (including the dmrt1 associated microsatellite) respectively. A specific sex-determination locus was identified on LG1 clearly linked with UNH995. However there appeared to be different allelic strengths for this sex determination locus, as shown by different sex ratios associated with different UNH995 genotypes. Additionally, one of the two XX fish mapped, showed the location of the recessive black blotching trait on LG3 (chromosome 1) between the markers GM128 and GM526, close to the centromere (Flpter=0.14). The results presented suggest a nascent Y chromosome in early stage of differentiation in Nile tilapia and with a functional master gene on LG1 close to the marker UNH995 (Flpter=0.67) located on the q arm of a small submetacentric chromosome. The potential influences of the autosomal LG3 (chromosome 1) in sex differentiation are also discussed.

With increasing world population, the demand for fish is growing thus there is a need to identify products with potential to increase the efficiency of fish production. Phytogenics are among the products being investigated as potential naturally derived growth promoters. The aim of this study was to identify phytogenic compounds and doses with growth-promoting effects in Nile tilapia and investigate relevant pathways underlying their growth promotion effects. The phytogenic compounds limonene, carvacrol and thymol, major constituents of essential oils from the plants citrus, oregano and thyme, respectively, were evaluated. Six Trials (Trials I, II, III, IV, V and VI) were carried out using diets supplemented with varying concentrations of the phytogenic compounds. In Trials I, II and III (Chapter 3), the effects of either limonene (Trial I), carvacrol (Trial II) or thymol (Trial III) on growth performance of Nile tilapia were investigated (objective 1) and performance parameters including final fish weight, daily growth coefficient, growth rate per metabolic body weight, percentage (%) weight gain, % survival, feed intake, feed conversion ratio and protein efficiency ratio were evaluated. Results from Trials I, II and III indicated that dietary supplementation of 400 and 500 ppm limonene and 750 ppm thymol had growth-promoting effects in Nile tilapia but the somatic growth was not associated with enhanced feed intake and feed utilisation efficiency. Trials IV and V (Chapter 4) investigated growth and nutritional physiology pathways in Nile tilapia regulated by individual phytogenic compounds (objective 2). This was accomplished by analysing the effects of limonene (Trial IV) and thymol (Trial V) supplemented diets on the expression of key genes participating in selected pathways of somatotropic axis-mediated growth, appetite regulation, nutrient digestion, absorption and transport, lipid metabolism, and antioxidant enzyme defence system. Limonene was supplemented in the diet at 0, 200, 400 and 600 ppm while thymol was supplemented at 0, 250 and 500 ppm. Trials IV and V found that growth-promoting effects of limonene (400 and 600 ppm) in Nile tilapia involved up-regulation of key genes within pathways including somatotropic axis-mediated growth, nutrient digestion, absorption and transport, lipid metabolism and antioxidant enzyme defence system. Dietary thymol at 250 and 500 ppm did not significantly enhance growth of Nile tilapia nor regulate the nutritional physiology pathways listed above. In Trial VI (Chapter 5), the effects of combined phytogenic compounds (limonene and thymol) on growth and nutritional physiology of Nile tilapia was tested (objective 3) to establish if the compounds had synergistic or additive effects on the growth of the fish as well as complementary effects on the selected nutritional physiology pathways. A candidate gene approach was also used for the selected pathways. Results from Trial VI showed that a diet supplemented with a combination of limonene (400 ppm) and thymol (500 ppm) has neither synergistic nor additive effects on the growth performance of Nile tilapia, with limonene mainly influencing the attained somatic growth. The analysed candidate genes involved in the pathways of nutrient digestion, absorption and transport, lipid metabolism, antioxidant enzymes and somatotropic axis growth also showed no synergistic or additive effects of a dietary combination of limonene and thymol in Nile tilapia. Overall, results from the study suggest approaches for developing functional diets for Nile tilapia using limonene and thymol growth promoters.

Phenotypic differences within a species significantly contribute to the variation we see among plants and animals. Plasticity as a concept helps us to understand some of this variation. Phenotypic plasticity plays a significant role in multiple ecological and evolutionary processes. Because plasticity can be driven by the environment it is more likely to produce beneficial alternative phenotypes than rare and often deleterious genetic mutations. Furthermore, differences in phenotypes that arise in response to the environment can affect multiple individuals from the same population (or entire populations) simultaneously and are therefore of greater evolutionary significance. This allows similar, beneficial alternative phenotypes to increase quickly within a single generation and allow new environments to produce and select for new phenotypes instantly. The direction of the present thesis is to increase our understanding of how phenotypic plasticity, coupled with contrasting environmental conditions, can produce alternative phenotypes within a population. Plasticity provides a source of variation for natural selection to act upon, and may lead to genetic isolation as a by-product. For example, there are multiple cases of polymorphic populations of fish, where groups belonging to multiple isolated gene pools, have arisen in sympatry. Here it is shown that although plasticity is important in sympatric speciation events, plasticity alone is not responsible for the frequency in which sympatric polymorphic populations occur. The most frequently observed differences among sympatric polymorphic populations are morphological differences associated with parts of the anatomy used in the detection, handling and capture of prey. Moreover, it is shown here that there are physiological effects associated with foraging on alternative prey that may significantly contribute towards ecological speciation. It is also shown in this study that anthropogenic abiotic factors can disrupt developmental processes during early ontogeny, significantly influencing morphology, and therefore having ecological consequences. Phenotypic structuring in postglacial fish is most frequently based around a divergence towards either pelagic or littoral benthic foraging specialisms. Divergences that deviate from this pattern are of greater scientific interest as they increase our understanding of how evolutionary processes and selection pressures work. Here we describe a rare divergence not based around the typical pelagic/littoral benthic foraging specialisms. Finally, in this study, the effectiveness of local level conservation policy shows that species of fish which are highly variable in their life history strategies are harder to effectively manage and often poorly represented at a local level.

Dans cette thèse, nous nous sommes intéressés aux réponses comportementales des poissonsd’un grand fleuve aménagé aux variations fréquentes et contrastées de l’environnement (débit,température et photopériode), de manière à comprendre (1) comment les poissons réagissent àces variations et (2) s’ils ont mis en place des stratégies comportementales en réponse à cesvariations.Le jeu de données comportementales utilisé dans cette thèse est issu d’un suivi télémétriquede 89 jours permettant l’enregistrement en continu de positions de 61 poissons, dont 23barbeaux, 19 chevaines et 11 silures. Le site d’étude est un secteur du Rhône de 2 km soumis àdes éclusées et situé au droit de la centrale nucléaire du Bugey qui rejette de l’eau échauffée enrive droite. Il est le sujet d’une modélisation hydrodynamique 2D permettant de connaitre en toutpoint du site et pour toutes valeurs du débit, les conditions abiotiques locales.De manière à connaitre la qualité des positions acquises durant le suivi télémétrique etcomprendre comment la performance du système de télémétrie est susceptible de varier au coursdu suivi des déplacements de poissons, la précision de ce système a été préalablement étudiéedans cette thèse. Pour la meilleure des combinaisons de variables intrinsèques possibles, laprobabilité de détection varie de 0 à 80 %, et l’erreur moyenne est de 3-5 m dans le chenal et <10 m en berges. La configuration géométrique des hydrophones situés autour de l’émetteuracoustique ajuste la probabilité de détection, alors que le réglage des paramètres de traitementdes signaux acoustiques ajuste l’erreur de positionnement.Les données de position couplées au modèle hydrodynamique ont permis de déterminer lespréférences d’habitat des poissons, leur distribution spatiale et leur mouvement en fonction desvariations de l’environnement (phases de la photopériode, valeur du débit et température del’eau). Les préférences d’habitat des trois espèces sont orientées vers des profondeurs < 1.4 m,des vitesses < 0.4 m.s-1 et un substrat grossier (plutôt caillou et pierre). La différence principaleest observée avec la température de l’eau : les cyprinidés préfèrent des températures < 22°C,alors que les silures préfèrent des températures > 23°C. Ces préférences d’habitat varientmajoritairement avec le débit puisque les trois espèces préfèrent à débit élevé (> 630 m3.s-1) deshabitats ayant des caractéristiques physiques hydrauliquement moins contraignantes(profondeurs et vitesses moins importantes et un substrat plus grossier). La photopériode agitprincipalement sur le mouvement des poissons (les barbeaux sont crépusculaires, les chevainesdiurnes et les silures nocturnes) alors que le débit et la température modifient la distributionspatiale des espèces. Les cyprinidés utilisent très peu la zone échauffée (< 10 % du temps) alorsque les silures passent ~ 55 % de leur temps dans cette zone. Lors des heures de débit élevé, lespoissons utilisent majoritairement les berges et exploitent rarement le chenal. Enfin, les variablesenvironnementales agissent de manière combinée sur le comportement des poissons, parexemple pour les cyprinidés qui profitent des débits faibles durant leurs phases d’activité pourexploiter temporairement des habitats devenus accessibles.Les poissons du Bugey ont donc mis en place des stratégies comportementales baséesessentiellement sur une utilisation importante des zones de berge qui leur permettent de réaliserla majorité de leurs fonctions vitales. Les différentes espèces présentent une grande fidélité àquelques habitats clé qu’ils utilisent fréquemment tout au long de la journée, mais qu’ils peuventquitter durant certaines combinaisons de variations environnementales / In this thesis, we studied the behavioral responses of fish to contrasting variations of theenvironment (flow, temperature and photoperiod) in order to understand (1) how fish react tothese changes and (2) if they have developed behavioral strategies in response to thesevariations.The behavioral data set used in this thesis comes from a continuous telemetry monitoringrealized during 89 days and recording positions of 61 fish of which 23 of barbel, 19 chub and 11catfish. The study site is an area of 2 km of the Rhone River subject to hydropeaking and locatedfront of the Bugey nuclear power plant that generates water heated on the right bank. The studysite is the subject of a 2D hydrodynamic modeling to know, at any point of the site and for allflow values, the local abiotic conditions.In order to know the quality of positions acquired during telemetric monitoring and how theperformance of the telemetry system is likely to vary during the monitoring of fish movements,the accuracy of this system has been previously studied in this thesis. To the best of possiblecombinations of intrinsic variables, the probability of detection varies from 0 to 80%, and theaverage error is 3-5 m in the channel and <10 m in banks. The geometrical configuration of thehydrophones located around the acoustic transmitter adjusts the probability of detection, whilethe setting of processing acoustic signals parameters adjusts the positioning error.The position data coupled with the hydrodynamic model were used to determine the habitatpreferences of fish, their spatial distribution and their movement, in response to changes in theenvironment (phases of photoperiod, water temperature and flow value). Habitat preferences ofthe three species are referred to depths <1.4 m, velocities <0.4 m.s-1 and coarse substrate (ratherrock and stone). The main difference is observed with the water temperature: cyprinids prefertemperatures <22 ° C, while catfish prefer temperatures> 23 ° C. These habitat preferences varymainly with the flow since the three species prefer during high flow (> 630 m3.s-1) habitats thatare hydraulically less stringent (lower speeds and depths and a coarser substrate). Photoperiodprimarily affects the movement of fish (barbel are crepuscular, the chub are diurnal and catfishare nocturnal) while the flow and temperature affect the spatial distribution of species. Cyprinidsuse very little the heated zone (<10% of the time) while catfish spend ~ 55% of their time in thisarea. During hours of high flow, the fish mostly use the banks and rarely exploit the channel.Finally, environmental variables acting in combination on fish behavior, such as cyprinids thatbenefit low flows during their phases of activity to exploit temporary habitats became available.Bugey fish have therefore implemented behavioral strategies based primarily on extensive useof shoreline areas that allow them to conduct most of their vital functions. The different speciesshow high fidelity to a few key habitats they use frequently throughout the day, but they canleave during certain combinations of environmental variations

In meiner Dissertation untersuche ich das Paarungs- und Fortpflanzungsverhalten des Europäischen Grasfrosches (Rana temporaria) in einem evolutionären Kontext. Mein Ziel ist es zu verstehen, welche Mechanismen zur Bildung von Paaren führen, ob die Partnerwahl die Paarungsmuster erklärt, die wir beobachten können, und ob es evolutive Vorteile gibt, die sich aus der Paarung mit einem bestimmten Partner ergeben. Die Suche nach und die Konkurrenz um Paarungspartner führt zur Entwicklung verschiedener Paarungssysteme, Strategien und Taktiken, um den Reproduktionserfolg während der gesamten Lebensdauer zu erhöhen. Das Paarungsverhalten wird durch natürliche und sexuelle Selektion beeinflusst, wobei beide in unterschiedliche Richtungen wirken können. Für die meisten Individuen ist das Überleben unerlässlich, um sich so oft wie möglich zu reproduzieren, und dadurch die reproduktive Gesamtfitness zu erhöhen. Andererseits könnte ein auffälliges Verhalten bei der Fortpflanzung das Prädationsrisiko erhöhen. Der Akt der Paarung selbst kann bereits mit Risiken verbunden sein, welche sich auf die Überlebensraten auswirken können. Durch sexuelle Selektion könnten bestimmte sekundäre Geschlechtsmerkmale begünstigt werden, entweder aufgrund von Vorteilen im Wettbewerb innerhalb eines Geschlechts (intrasexuell), oder aufgrund spezifischer Präferenzen zwischen den Geschlechtern (intersexuelle Selektion). Damit sich die Partnerwahl entwickeln kann, muss der gewählte Paarungspartner Vorteile aufweisen, von denen der wählende Partner profitiert, denn die Wahl ist mit energetischen Kosten und zeitlichem Aufwand verbunden. Als Frühlaicher muss der Europäische Grasfrosch mit einem eingeschränktem Paarungszeitraum umgehen. Die Männchen konkurrieren um den Zugang zu Weibchen und es wird angenommen, dass sich Weibchen während der Paarung und Reproduktion passiv verhalten, da der hohe "Männchen-Überschuss" keine Wahl zulassen würde. Aus evolutionärer Sicht sollten Weibchen jedoch das wählerische Geschlecht sein und entscheiden mit wem sie sich paaren, da sie mehr Energie in die Eierproduktion investieren. / In my thesis, I examine the mating and reproductive behaviour of the European Common Frog (Rana temporaria) in an evolutionary context. I aim to understand which mechanisms lead to the formation of pairs, if mate choice shapes the patterns of mating that we can observe and if there are benefits derived from pairing with a specific mate. The search and competition for mating partners lead to the evolution of various mating systems, strategies and tactics to increase lifetime reproductive success. The mating behaviour is influenced by natural and sexual selection, whereby both could act in different directions. For most individuals, survival is essential in order to reproduce as often as possible to increase lifetime reproductive fitness. On the other hand, reproduction could increase predation risk due to conspicuous behaviour and risks associated with mating itself. Sexual selection could favour specific secondary sexual traits, either due to advantages in intrasexual competition, or by specific preferences of the choosy sex (intersexual selection). For mate choice to evolve, there need to be benefits associated with the chosen mating partner, because choosiness involves costs in terms of energy and time constraints during mating. As an explosive breeder, the European Common Frog has to deal with time constraints during the short breeding season. The males are competing for the access to females and it is assumed that females are passive during breeding due to a high male-biased operational sex ratio. However, from an evolutionary perspective females should be the choosy sex and should decide with whom to mate, as they invest more energy into the production of eggs.

Gyrodactylus salaris Malmberg, 1957, is a notifiable freshwater ecto-parasite that infects both wild and farmed populations of Atlantic salmon (Salmo salar, L.). It has caused catastrophic damage to wild salmon stocks in Norway since its accidental introduction in 1975, reducing salmon density in some rivers by 98% over a period of five years. It is estimated that G. salaris has cost the Norwegian salmon industry more than 500 million EUR. Currently the UK has G. salaris free status under EU law, however, it is believed that if G. salaris emerged in the UK the impact would be similar to that witnessed in Norway. The aim of this thesis is to develop mathematical models that describe the salmon-G. salaris system in order to gain a greater understanding of the possible long-term impact the parasite may have on wild populations of Atlantic salmon in G. salaris-free territories such as the UK. Mathematical models, including deterministic, Leslie matrix and individual based models, were used to investigate the impact of G. salaris on Atlantic salmon at the individual and population level. It is known that the Atlantic strain of Atlantic salmon, examples of which occur naturally in Norway and the UK, does not have any resistance to G. salaris infections and the parasite population is able to quickly grow to epidemic levels. In contrast, the Baltic strain of Atlantic salmon, examples of which occur naturally in Sweden and Russia, exhibits some form of resistance and the parasite is unable to persist. Thus, baseline models were extended to include immunity to infection, a trade-off on salmon reproductive rate, and finally, to consider interactions between populations of G. salaris and multiple strains of salmon exhibiting varying levels of immunity from fully susceptible to resistant. The models proposed predict that in the absence of host resistance or an immune response infections by G. salaris will result in an epidemic followed by the extinction of the salmon host population. Models also predict that if salmon are able to increase their resistance to G. salaris infections through mutations, salmon population recovery after the epidemic is indeed possible within 10-15 years post introduction with low level parasite coexistence. Finally, models also highlight areas where additional information is needed in order to improve predictions and enable the estimation of important parameter values. Model predictions will ultimately be used to assist in future contingency planning against G. salaris outbreaks in the UK and possibly as a basis for future models describing other fish/ecto-parasite systems.

Background: Temperature has a fundamental effect on organisms because it alters the speed of biochemical reactions and thus metabolism. This influence scales up to have ecosystem wide effects as the life history strategies of individual species differ in response to temperature. With the prospect of increasing global temperatures ecosystem functions could be interrupted. In order to predict the consequences of changing environmental conditions it is important to first establish how fitness related traits are affected by changing thermal conditions. Aims: The aim of this thesis was to develop a detailed understanding of the thermal niche of an invasive, tropical freshwater fish species. Methods: Using ecologically realistic conditions this thesis investigates the effect of environmental variation within and between generations on behavioural, growth, physiological, and reproductive characteristics of the Trinidadian guppy (Poecilia reticulata). Results: The results provide an insight into the fundamental thermal niche of a widely used model fish species as well as detailed measures of how thermal change alters phenotypic characteristics. Guppies are demonstrated to have a broad thermal tolerance and be phenotypically responsive to changing environmental conditions. The results also suggest that environmental characteristics of the guppy's habitat make an important contribution to the differences observed between populations of guppies in Trinidad. Conclusions: Water temperature in the guppy's natural environment varies widely over a daily cycle and I suggest that this is partly responsible for the guppy becoming phenotypically plastic and thermally tolerant. Furthermore, phenotypic flexibility is an important characteristic that will enable guppies to withstand some climate warming and continue to expand their invasive range poleward. Using experimental conditions which resemble those in the natural environment is important for developing accurate model parameters. These are necessary for predicting the ecosystem effects of environmental variation and for adaptive mitigation or pre-emptive management of range extensions by invasive species.